Rmu_sc0034887.1_g000001

rpm1,rps3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034887.1
OG0019233
Physical Location & Seq
Reverse (-)
2 .. 710
709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034887.1_g000001.1.cds

Sequence Viewer

Length: 709 bp
atgaacaatcttcaactaactgctttgttcctgctagcaaatcaaaatatatctcaacatgatggtagttggctgcaatttgatggggcgaacactttaagagtgcttgagctacaagataccaaaatcaaaaagttaccagatgaagtgggaagcctaatacacctcacgtttcttggcttgaaaagcacggatataaatgaacttccagaggggctaggcagattagaagccctgcaaactttggatattagatggtgtggggatttaacaggcttgtcagctgagataataaatcttgtaaggttgaggcacctcaagatgttcaagaacaaatgcatttctgggatgaagctaccggcaggaataggaagactcacagatcttctgaccctgacaggtatacacgctggtggtggcactgcagctgaagtaggtaacctgacagggctcagaagactaggagtgatggatgtggacgaggagaatgtcattgagctatttgcctccattatgaagatgcaaggccttctttccttgtgtttagaagcaaaacacacattccctcagggacaacttattctcctggagtccttctcacctccaccatttcttcaaaagcttcacctcaaaggcatcctagaaaagccgcctgcttggtttggttccttggaaaggctcacaaacttaagattaggcttctcccatt

Protein Analysis

236

Amino Acids

26.04

Weight (kDa)

6.66

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019233)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06010 FvH4_5g32740
malus_domestica MD14G1174200.v1.1
prunus_persica Prupe.5G167700_v2.0.a1
rosa_multiflora Rmu_sc0002040.1_g000041 Rmu_sc0028138.1_g000001 Rmu_sc0034887.1_g000001
rosa_rugosa Rorug07G0005200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 312
AccI GTMKAC 1 cut(s) 403
AciI CCGC 1 cut(s) 650
AcuI CTGAAG 1 cut(s) 450
AfiI CCNNNNNNNGG 1 cut(s) 675
AflII CTTAAG 1 cut(s) 688
AgsI TTSAA 4 cut(s) 14, 184, 328, 617
AjnI CCWGG 1 cut(s) 585
AleI CACNNNNGTG 1 cut(s) 411
AluBI AGCT 6 cut(s) 112, 284, 355, 428, 499, 622
AluI AGCT 6 cut(s) 112, 284, 355, 428, 499, 622
AoxI GGCC 1 cut(s) 526
ApeKI GCWGC 2 cut(s) 73, 425
AsuHPI GGTGA 2 cut(s) 591, 617
AsuNHI GCTAGC 1 cut(s) 34
AxyI CCTNAGG 1 cut(s) 567
BanI GGYRCC 1 cut(s) 312
BanII GRGCYC 1 cut(s) 453
BbsI GAAGAC 2 cut(s) 379, 463
BbvI GCAGC 2 cut(s) 60, 437
BccI CCATC 4 cut(s) 56, 77, 249, 463
BciT130I CCWGG 1 cut(s) 587
BfaI CTAG 4 cut(s) 35, 218, 461, 641
BfmI CTRYAG 1 cut(s) 423
BfrI CTTAAG 1 cut(s) 688
BglII AGATCT 1 cut(s) 382
BisI GCNGC 3 cut(s) 74, 426, 650
BlsI GCNGC 3 cut(s) 75, 427, 651
Bme1390I CCNGG 1 cut(s) 587
BmiI GGNNCC 2 cut(s) 314, 667
BmrFI CCNGG 1 cut(s) 587
BmsI GCATC 2 cut(s) 510, 645
BmtI GCTAGC 1 cut(s) 38
BpiI GAAGAC 2 cut(s) 379, 463
BplI GAGNNNNNCTC 2 cut(s) 581, 613
BpmI CTGGAG 1 cut(s) 608
BpuEI CTTGAG 2 cut(s) 128, 302
BsaJI CCNNGG 1 cut(s) 669
BsaXI ACNNNNNCTCC 2 cut(s) 567, 597
Bsc4I CCNNNNNNNGG 1 cut(s) 675
Bse118I RCCGGY 1 cut(s) 358
Bse21I CCTNAGG 1 cut(s) 567
BseBI CCWGG 1 cut(s) 587
BseDI CCNNGG 1 cut(s) 669
BseGI GGATG 3 cut(s) 354, 478, 636
BseLI CCNNNNNNNGG 1 cut(s) 675
BseMII CTCAG 3 cut(s) 276, 466, 581
BseRI GAGGAG 1 cut(s) 497
BseXI GCAGC 2 cut(s) 60, 437
BshFI GGCC 1 cut(s) 528
BshNI GGYRCC 1 cut(s) 312
BsiSI CCGG 1 cut(s) 359
BslFI GGGAC 1 cut(s) 585
BslI CCNNNNNNNGG 1 cut(s) 675
BsmFI GGGAC 1 cut(s) 585
BsnI GGCC 1 cut(s) 528
Bsp1286I GDGCHC 1 cut(s) 453
Bsp143I GATC 1 cut(s) 382
BspACI CCGC 1 cut(s) 650
BspANI GGCC 1 cut(s) 528
BspCNI CTCAG 3 cut(s) 277, 465, 580
BspLI GGNNCC 2 cut(s) 314, 667
BspMAI CTGCAG 1 cut(s) 427
BspOI GCTAGC 1 cut(s) 38
BspT107I GGYRCC 1 cut(s) 312
BspTI CTTAAG 1 cut(s) 688
BsrFI RCCGGY 1 cut(s) 358
BssAI RCCGGY 1 cut(s) 358
BssECI CCNNGG 1 cut(s) 669
BssMI GATC 1 cut(s) 382
BssNAI GTATAC 1 cut(s) 404
BssT1I CCWWGG 1 cut(s) 669
Bst1107I GTATAC 1 cut(s) 404
Bst2UI CCWGG 1 cut(s) 587
BstAFI CTTAAG 1 cut(s) 688
BstC8I GCNNGC 2 cut(s) 36, 654
BstDEI CTNAG 3 cut(s) 285, 452, 567
BstEII GGTNACC 1 cut(s) 437
BstENI CCTNNNNNAGG 1 cut(s) 673
BstF5I GGATG 3 cut(s) 354, 478, 636
BstKTI GATC 1 cut(s) 385
BstMBI GATC 1 cut(s) 382
BstMWI GCNNNNNNNGC 1 cut(s) 186
BstNI CCWGG 1 cut(s) 587
BstPI GGTNACC 1 cut(s) 437
BstSCI CCNGG 1 cut(s) 585
BstSFI CTRYAG 1 cut(s) 423
BstV1I GCAGC 2 cut(s) 60, 437
BstV2I GAAGAC 2 cut(s) 379, 463
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BstZ17I GTATAC 1 cut(s) 404
Bsu36I CCTNAGG 1 cut(s) 567
BsuRI GGCC 1 cut(s) 528
BtsCI GGATG 3 cut(s) 354, 478, 636
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 1 cut(s) 420
Cac8I GCNNGC 2 cut(s) 36, 654
Cfr10I RCCGGY 1 cut(s) 358
CviAII CATG 1 cut(s) 59
DdeI CTNAG 3 cut(s) 285, 452, 567
DpnI GATC 1 cut(s) 384
DpnII GATC 1 cut(s) 382
Eco130I CCWWGG 1 cut(s) 669
Eco147I AGGCCT 1 cut(s) 528
Eco24I GRGCYC 1 cut(s) 453
Eco57I CTGAAG 1 cut(s) 450
Eco81I CCTNAGG 1 cut(s) 567
Eco91I GGTNACC 1 cut(s) 437
EcoNI CCTNNNNNAGG 1 cut(s) 673
EcoO65I GGTNACC 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 585
EcoT14I CCWWGG 1 cut(s) 669
EcoT22I ATGCAT 1 cut(s) 341
EcoT38I GRGCYC 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 669
FaeI CATG 1 cut(s) 62
FaiI YATR 5 cut(s) 50, 60, 197, 404, 515
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FaqI GGGAC 1 cut(s) 585
FatI CATG 1 cut(s) 58
FblI GTMKAC 1 cut(s) 403
Fnu4HI GCNGC 3 cut(s) 74, 426, 650
FokI GGATG 3 cut(s) 361, 485, 623
FriOI GRGCYC 1 cut(s) 453
Fsp4HI GCNGC 3 cut(s) 74, 426, 650
FspBI CTAG 4 cut(s) 35, 218, 461, 641
GluI GCNGC 3 cut(s) 74, 426, 650
GsuI CTGGAG 1 cut(s) 608
HaeIII GGCC 1 cut(s) 528
HapII CCGG 1 cut(s) 359
Hin1II CATG 1 cut(s) 62
HindIII AAGCTT 1 cut(s) 620
HinfI GANTC 2 cut(s) 375, 590
HpaII CCGG 1 cut(s) 359
HphI GGTGA 2 cut(s) 591, 617
Hpy166II GTNNAC 2 cut(s) 404, 478
Hpy188I TCNGA 2 cut(s) 390, 455
Hpy188III TCNNGA 3 cut(s) 209, 319, 328
Hpy8I GTNNAC 2 cut(s) 404, 478
HpyAV CCTTC 2 cut(s) 539, 604
HpyCH4IV ACGT 1 cut(s) 170
HpyCH4V TGCA 5 cut(s) 76, 238, 339, 425, 523
HpyF10VI GCNNNNNNNGC 1 cut(s) 186
HpyF3I CTNAG 3 cut(s) 285, 452, 567
HpySE526I ACGT 1 cut(s) 170
Hsp92II CATG 1 cut(s) 62
Kzo9I GATC 1 cut(s) 382
Lsp1109I GCAGC 2 cut(s) 60, 437
LweI GCATC 2 cut(s) 510, 645
MaeI CTAG 4 cut(s) 35, 218, 461, 641
MaeII ACGT 1 cut(s) 170
MaeIII GTNAC 2 cut(s) 135, 437
MalI GATC 1 cut(s) 384
MboI GATC 1 cut(s) 382
MboII GAAGA 5 cut(s) 377, 384, 468, 529, 605
MflI RGATCY 1 cut(s) 382
MhlI GDGCHC 1 cut(s) 453
MluCI AATT 1 cut(s) 77
MlyI GAGTC 2 cut(s) 369, 599
MnlI CCTC 9 cut(s) 176, 205, 303, 326, 475, 517, 576, 612, 638
Mph1103I ATGCAT 1 cut(s) 341
MseI TTAA 3 cut(s) 98, 269, 689
MslI CAYNNNNRTG 1 cut(s) 411
MspA1I CMGCKG 2 cut(s) 284, 428
MspCI CTTAAG 1 cut(s) 688
MspI CCGG 1 cut(s) 359
MspR9I CCNGG 1 cut(s) 587
MvaI CCWGG 1 cut(s) 587
MwoI GCNNNNNNNGC 1 cut(s) 186
NdeII GATC 1 cut(s) 382
NheI GCTAGC 1 cut(s) 34
NlaIII CATG 1 cut(s) 62
NlaIV GGNNCC 2 cut(s) 314, 667
NsiI ATGCAT 1 cut(s) 341
OliI CACNNNNGTG 1 cut(s) 411
PceI AGGCCT 1 cut(s) 528
PfoI TCCNGGA 1 cut(s) 585
PkrI GCNGC 3 cut(s) 75, 427, 651
PleI GAGTC 2 cut(s) 369, 598
PpsI GAGTC 2 cut(s) 369, 598
Psp6I CCWGG 1 cut(s) 585
PspEI GGTNACC 1 cut(s) 437
PspGI CCWGG 1 cut(s) 585
PspN4I GGNNCC 2 cut(s) 314, 667
PstI CTGCAG 1 cut(s) 427
PsuI RGATCY 1 cut(s) 382
PvuII CAGCTG 2 cut(s) 284, 428
RseI CAYNNNNRTG 1 cut(s) 411
SaqAI TTAA 3 cut(s) 98, 269, 689
SatI GCNGC 3 cut(s) 74, 426, 650
Sau3AI GATC 1 cut(s) 382
SchI GAGTC 2 cut(s) 369, 599
ScrFI CCNGG 1 cut(s) 587
SduI GDGCHC 1 cut(s) 453
SfaNI GCATC 2 cut(s) 510, 645
SfcI CTRYAG 1 cut(s) 423
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 3 cut(s) 107, 317, 688
SmoI CTYRAG 3 cut(s) 107, 317, 688
Sse9I AATT 1 cut(s) 77
SseBI AGGCCT 1 cut(s) 528
SsiI CCGC 1 cut(s) 650
SspMI CTAG 4 cut(s) 35, 218, 461, 641
StuI AGGCCT 1 cut(s) 528
StyD4I CCNGG 1 cut(s) 585
StyI CCWWGG 1 cut(s) 669
TaiI ACGT 1 cut(s) 173
TasI AATT 1 cut(s) 77
TauI GCSGC 1 cut(s) 652
Tru1I TTAA 3 cut(s) 98, 269, 689
Tru9I TTAA 3 cut(s) 98, 269, 689
TscAI CASTG 1 cut(s) 427
TseI GCWGC 2 cut(s) 73, 425
TspDTI ATGAA 5 cut(s) 17, 159, 216, 365, 530
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 1 cut(s) 427
Vha464I CTTAAG 1 cut(s) 688
XagI CCTNNNNNAGG 1 cut(s) 673
XmiI GTMKAC 1 cut(s) 403
XspI CTAG 4 cut(s) 35, 218, 461, 641
Zsp2I ATGCAT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.