Rmu_sc0028138.1_g000001

rpm1,rps3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028138.1
OG0019233
Physical Location & Seq
Reverse (-)
63 .. 585
523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028138.1_g000001.1.cds

Sequence Viewer

Length: 523 bp
caaaggcatcctagaaaagccgcctgcttggtttggttccttggaaaggctcacaaacttaagattaggcttctcccatttgtctgagaacccatcattggtacttcaagtcctacccaacttgaaaaacttaaccctttggcaggcttatgatgcaaagcaaatagggaaagagttctgtagtactggtgggttttccaagctcgaggttctcatcattgcttctcgtgttcttgaggagttgacagaacttgaagagggagcactacctagcttgaagtacctccacttgcacagttgtctgcggttgaggatgttacctgaaggtctgcaatccctcaccacactgaagcagttgcatttgctgcctctgctggatgatcatgcagaacggctgaaacctgatggtggagaggagtattacaaaattaagcacattccagagatatcatacataaccaactctatggtacaagaatatgtgaaaactgggcatggaggaacagtcatgatgcaaggataa

Protein Analysis

173

Amino Acids

19.51

Weight (kDa)

6.41

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019233)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06010 FvH4_5g32740
malus_domestica MD14G1174200.v1.1
prunus_persica Prupe.5G167700_v2.0.a1
rosa_multiflora Rmu_sc0002040.1_g000041 Rmu_sc0028138.1_g000001 Rmu_sc0034887.1_g000001
rosa_rugosa Rorug07G0005200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 21, 305
AcuI CTGAAG 2 cut(s) 343, 369
AfaI GTAC 4 cut(s) 103, 185, 282, 472
AfiI CCNNNNNNNGG 4 cut(s) 46, 98, 143, 408
AflII CTTAAG 1 cut(s) 59
AgsI TTSAA 4 cut(s) 108, 125, 255, 278
AjuI GAANNNNNNNTTGG 2 cut(s) 81, 113
AluBI AGCT 2 cut(s) 203, 274
AluI AGCT 2 cut(s) 203, 274
Alw21I GWGCWC 1 cut(s) 266
Ama87I CYCGRG 1 cut(s) 204
ApeKI GCWGC 1 cut(s) 365
Asp700I GAANNNNTTC 1 cut(s) 174
AsuHPI GGTGA 1 cut(s) 332
AvaI CYCGRG 1 cut(s) 204
BauI CACGAG 1 cut(s) 226
Bbv12I GWGCWC 1 cut(s) 266
BbvI GCAGC 1 cut(s) 352
BccI CCATC 2 cut(s) 101, 399
BceAI ACGGC 1 cut(s) 408
BclI TGATCA 1 cut(s) 380
BfaI CTAG 2 cut(s) 12, 271
BfmI CTRYAG 1 cut(s) 179
BfrI CTTAAG 1 cut(s) 59
BisI GCNGC 2 cut(s) 21, 366
BlsI GCNGC 2 cut(s) 22, 367
BmcAI AGTACT 1 cut(s) 185
BmeT110I CYCGRG 1 cut(s) 204
BmiI GGNNCC 1 cut(s) 38
BmrI ACTGGG 1 cut(s) 499
BmsI GCATC 3 cut(s) 16, 143, 502
BmuI ACTGGG 1 cut(s) 499
BpuEI CTTGAG 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 40
BsaXI ACNNNNNCTCC 2 cut(s) 490, 520
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 98, 143, 408
Bse1I ACTGG 2 cut(s) 191, 494
Bse3DI GCAATG 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 3 cut(s) 7, 319, 383
BseLI CCNNNNNNNGG 4 cut(s) 46, 98, 143, 408
BseMI GCAATG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 76
BseNI ACTGG 2 cut(s) 191, 494
BseRI GAGGAG 2 cut(s) 252, 429
BseXI GCAGC 1 cut(s) 352
BsiHKAI GWGCWC 1 cut(s) 266
BsiHKCI CYCGRG 1 cut(s) 204
BslI CCNNNNNNNGG 4 cut(s) 46, 98, 143, 408
BsoBI CYCGRG 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 266
Bsp143I GATC 1 cut(s) 380
BspACI CCGC 2 cut(s) 21, 305
BspCNI CTCAG 1 cut(s) 77
BspHI TCATGA 1 cut(s) 508
BspLI GGNNCC 1 cut(s) 38
BspTI CTTAAG 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 217
BsrI ACTGG 2 cut(s) 191, 494
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 1 cut(s) 380
BssSI CACGAG 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 40
Bst2BI CACGAG 1 cut(s) 226
Bst4CI ACNGT 2 cut(s) 297, 506
Bst6I CTCTTC 1 cut(s) 250
BstAFI CTTAAG 1 cut(s) 59
BstAPI GCANNNNNTGC 1 cut(s) 365
BstC8I GCNNGC 2 cut(s) 25, 145
BstDEI CTNAG 1 cut(s) 85
BstENI CCTNNNNNAGG 2 cut(s) 44, 141
BstF5I GGATG 3 cut(s) 7, 319, 383
BstKTI GATC 1 cut(s) 383
BstMBI GATC 1 cut(s) 380
BstMWI GCNNNNNNNGC 3 cut(s) 153, 365, 371
BstSFI CTRYAG 1 cut(s) 179
BstV1I GCAGC 1 cut(s) 352
BstXI CCANNNNNNTGG 1 cut(s) 467
BtsCI GGATG 3 cut(s) 7, 319, 383
BtsIMutI CAGTG 1 cut(s) 345
Cac8I GCNNGC 2 cut(s) 25, 145
CciI TCATGA 1 cut(s) 508
Csp6I GTAC 4 cut(s) 102, 184, 281, 471
CviAII CATG 3 cut(s) 384, 495, 509
CviJI RGCY 7 cut(s) 20, 50, 70, 147, 203, 274, 395
CviKI_1 RGCY 7 cut(s) 20, 50, 70, 147, 203, 274, 395
CviQI GTAC 4 cut(s) 102, 184, 281, 471
DdeI CTNAG 1 cut(s) 85
DpnI GATC 1 cut(s) 382
DpnII GATC 1 cut(s) 380
Eam1104I CTCTTC 1 cut(s) 250
EarI CTCTTC 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 40
Eco32I GATATC 1 cut(s) 448
Eco57I CTGAAG 2 cut(s) 343, 369
Eco88I CYCGRG 1 cut(s) 204
EcoNI CCTNNNNNAGG 2 cut(s) 44, 141
EcoRV GATATC 1 cut(s) 448
EcoT14I CCWWGG 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 3 cut(s) 387, 498, 512
FaiI YATR 8 cut(s) 151, 385, 452, 456, 468, 481, 496, 510
FatI CATG 3 cut(s) 383, 494, 508
FbaI TGATCA 1 cut(s) 380
Fnu4HI GCNGC 2 cut(s) 21, 366
FokI GGATG 2 cut(s) 326, 390
Fsp4HI GCNGC 2 cut(s) 21, 366
FspBI CTAG 2 cut(s) 12, 271
GluI GCNGC 2 cut(s) 21, 366
Hin1II CATG 3 cut(s) 387, 498, 512
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 1 cut(s) 86
Hpy188III TCNNGA 3 cut(s) 234, 441, 509
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 318
HpyCH4III ACNGT 2 cut(s) 297, 506
HpyCH4V TGCA 6 cut(s) 156, 293, 332, 359, 387, 515
HpyF10VI GCNNNNNNNGC 3 cut(s) 153, 365, 371
HpyF3I CTNAG 1 cut(s) 85
Hsp92II CATG 3 cut(s) 387, 498, 512
Ksp22I TGATCA 1 cut(s) 380
Kzo9I GATC 1 cut(s) 380
LmnI GCTCC 1 cut(s) 261
LpnPI CCDG 8 cut(s) 37, 129, 172, 334, 360, 415, 454, 475
Lsp1109I GCAGC 1 cut(s) 352
LweI GCATC 3 cut(s) 16, 143, 502
MaeI CTAG 2 cut(s) 12, 271
MaeIII GTNAC 1 cut(s) 316
MalI GATC 1 cut(s) 382
MboI GATC 1 cut(s) 380
MboII GAAGA 1 cut(s) 267
MhlI GDGCHC 1 cut(s) 266
MluCI AATT 1 cut(s) 427
MnlI CCTC 9 cut(s) 200, 230, 251, 294, 304, 348, 379, 407, 492
MroXI GAANNNNTTC 1 cut(s) 174
MseI TTAA 3 cut(s) 60, 132, 430
MspCI CTTAAG 1 cut(s) 59
MwoI GCNNNNNNNGC 3 cut(s) 153, 365, 371
NdeII GATC 1 cut(s) 380
NlaIII CATG 3 cut(s) 387, 498, 512
NlaIV GGNNCC 1 cut(s) 38
PaeR7I CTCGAG 1 cut(s) 204
PagI TCATGA 1 cut(s) 508
PdmI GAANNNNTTC 1 cut(s) 174
PkrI GCNGC 2 cut(s) 22, 367
PspN4I GGNNCC 1 cut(s) 38
PspXI VCTCGAGB 1 cut(s) 204
RsaI GTAC 4 cut(s) 103, 185, 282, 472
RsaNI GTAC 4 cut(s) 102, 184, 281, 471
SaqAI TTAA 3 cut(s) 60, 132, 430
SatI GCNGC 2 cut(s) 21, 366
Sau3AI GATC 1 cut(s) 380
ScaI AGTACT 1 cut(s) 185
SduI GDGCHC 1 cut(s) 266
SetI ASST 8 cut(s) 205, 211, 272, 276, 286, 323, 329, 404
SfaNI GCATC 3 cut(s) 16, 143, 502
SfcI CTRYAG 1 cut(s) 179
Sfr274I CTCGAG 1 cut(s) 204
SlaI CTCGAG 1 cut(s) 204
SmlI CTYRAG 3 cut(s) 59, 204, 234
SmoI CTYRAG 3 cut(s) 59, 204, 234
Sse9I AATT 1 cut(s) 427
SsiI CCGC 2 cut(s) 21, 305
SspMI CTAG 2 cut(s) 12, 271
StyI CCWWGG 1 cut(s) 40
TaaI ACNGT 2 cut(s) 297, 506
TaqI TCGA 1 cut(s) 205
TasI AATT 1 cut(s) 427
TatI WGTACW 1 cut(s) 183
TauI GCSGC 1 cut(s) 23
Tru1I TTAA 3 cut(s) 60, 132, 430
Tru9I TTAA 3 cut(s) 60, 132, 430
TscAI CASTG 1 cut(s) 352
TseI GCWGC 1 cut(s) 365
TspRI CASTG 1 cut(s) 352
Vha464I CTTAAG 1 cut(s) 59
XagI CCTNNNNNAGG 2 cut(s) 44, 141
XhoI CTCGAG 1 cut(s) 204
XmnI GAANNNNTTC 1 cut(s) 174
XspI CTAG 2 cut(s) 12, 271
ZrmI AGTACT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.