Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0014737

Physical Location & Seq

Genomic Coordinates Forward (+)

14639340 .. 14644603

Gene Structure 5264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G171300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1524 bp

ATGACTTTGAGCTCTGACCCTCCCGCTCCTCTAGACTGGAAATTCTCTCAGGTGTTCGGCGAACGAGCTCCCGGAGACGACCTTCAGGATGTTGATATGATATCTGCGATAGAATTCGACAAGAGTGGTGATTTCCTTGCTATTGGAGATCGAGGTGGCCGCTGCATAATATTCGAGAGGAAGGATGGGAAACATACTTTAAATCAGCATCATTCTCGACATGAGCTGGAGCAGTTGGATTTCACATCCACCCAGCATCCTGAATTTCAATTTAAGACTGAGTTTCAAGGTCATGAACCCGAGTTTGACTACTTAAAGAGTGTGGAAATTGAAGAGAAGATCAACAAAGTAAGATGGTGTGCAACATCTAGTGGATCCCAATTCATGCTTTCAACAAATGACAAGACAATAAAACTGTGGAAGGTCAAGGAATGCAAGGTGAAGAAAGTAAAAGAAATGAACGCTCATCCATTTGCATGTTTAGATAACATGCTTCTGGCTGAAAGGAGTTTCGTCAGTAGGGAAGATAAACCAGCTGTTGTGAATGGCTATCGCCAGGAATGGATGGAGACGATCGCTAAGAATGCCTCACCATCTCAAGACATGCATTCCAAGGTAGCTGACATGGAAGACACTGCTCATACAAGATGCCGAAAGGTGTATGCTCATGCTCATGATTTTAATATTAACTCCATCTCAAATAATAGTGATTGTGAAACATTTCTTTCTGCGGATGATCTTAGAATAAACTTGTGGAATCTTGAGATCAGTGATCAGTGTTTCAATATCCTTGATATGAAGCCAGCAAACATGGAGGATCTTACTGAGGTCATAACAACGGCTGAATTCCATCCCATTCATTGTAATCTGCTCGCATACAGTAGCTCCAGAGGTTTTATTCGTTTAGTTGACATGCGGCAGTCAGCTTTGTGCGATCACAGTGCAAGAATATTACAAGATGGAGATTCTCATGGGCTGAAATCATTTTTCACAGAAATTATTGCATCCATTTCTGATATGAAGTTTTCAAGGGATGGACGGCACATCTTAAGTCGTGACTACATGAATCTAAAGCTCTGGGACACGCATATGGATTCTTCACCAGTTGCAATATACAAGATTCATGAGCACCTGCGCCCTAAGTTATCTGAGTTGTATAACAATGATCGCATATTTGATAGATTTGGTTGCTGCTTCAGTGGAGATGGACTTCATTTTGCAACTGGATCTTACAGCAACCTAATGCGCATTTTCTCCGGTGGAGATGGAAGCGAAGGAGCTACAATAGAAGCTAGCAAAACTCCCAACAGGAAACCACTTCTCCGGACTGCTCCAAGGGCTAGGAGGTCATCCTTGAGCAATCTGGCACGAGGATTTTACCGGCACGGGCATGAAAATTCAAGCTCGGGCAGTAATGAAAGTAGTTACGACCTAAGCTCCAGGCTACTACATTTGGCATGGCATCCAGAAACAAACTTGATTGCTAGTGCCGCTGGGAATAGCTTGTTCATGTATTATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0000278 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008287 GO:0009987 GO:0010921 GO:0016311 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032502 GO:0032991 GO:0035303 GO:0035304 GO:0036211 GO:0043170 GO:0043412 GO:0043666 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0060255 GO:0065007 GO:0065009 GO:0070262 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

WD40

Protein Analysis

508

Amino Acids

57.71

Weight (kDa)

6.06

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014737)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05510
malus_domestica	MD14G1177400.v1.1
prunus_persica	Prupe.5G171300_v2.0.a1 Prupe.5G171300_v2.0.a1
pyrus_communis	pycom14g14830
rosa_chinensis	RchiOBHm_Chr7g0193311
rosa_laevigata	RLG00000004280 RLG00000014378
rosa_multiflora	Rmu_ssc0000092.1_g000013
rosa_roxburghii	Rroxscaffold_3G00262220 Rroxscaffold_4G00314280
rosa_rugosa	Rorug07G0008800
rosa_samantha	Rh7AG134400 Rh7BG135400 Rh7CG138500 Rh7DG136500
rosa_wichuraiana	Rw7G011500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1140
Acc16I	TGCGCA	1 cut(s)	1247
Acc36I	ACCTGC	1 cut(s)	1140
AccBSI	CCGCTC	1 cut(s)	26
AccIII	TCCGGA	1 cut(s)	1323
AciI	CCGC	5 cut(s)	24, 160, 731, 916, 1491
AclWI	GGATC	4 cut(s)	369, 382, 825, 1234
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	5 cut(s)	41, 113, 263, 845, 1396
AcuI	CTGAAG	2 cut(s)	68, 1180
AflII	CTTAAG	1 cut(s)	1048
AgsI	TTSAA	7 cut(s)	269, 287, 332, 393, 784, 1029, 1401
AjnI	CCWGG	2 cut(s)	555, 1439
Alw21I	GWGCWC	3 cut(s)	14, 70, 1131
Alw26I	GTCTC	2 cut(s)	69, 563
AlwI	GGATC	4 cut(s)	369, 382, 825, 1234
Ama87I	CYCGRG	2 cut(s)	299, 1405
Aor13HI	TCCGGA	1 cut(s)	1323
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	2 cut(s)	162, 1191
ApoI	RAATTY	5 cut(s)	41, 113, 263, 845, 1396
Asp700I	GAANNNNTTC	1 cut(s)	720
AspLEI	GCGC	2 cut(s)	1137, 1248
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	4 cut(s)	140, 451, 582, 1092
AsuNHI	GCTAGC	1 cut(s)	1292
AvaI	CYCGRG	2 cut(s)	299, 1405
BamHI	GGATCC	1 cut(s)	374
BanII	GRGCYC	2 cut(s)	14, 70
BauI	CACGAG	1 cut(s)	1368
BbsI	GAAGAC	1 cut(s)	636
Bbv12I	GWGCWC	3 cut(s)	14, 70, 1131
BbvI	GCAGC	2 cut(s)	149, 1178
BceAI	ACGGC	2 cut(s)	855, 1055
BcgI	CGANNNNNNTGC	6 cut(s)	154, 188, 197, 231, 923, 957
BciT130I	CCWGG	2 cut(s)	557, 1441
BclI	TGATCA	1 cut(s)	772
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	2 cut(s)	69, 563
BfaI	CTAG	5 cut(s)	32, 369, 1293, 1341, 1485
BfrI	CTTAAG	1 cut(s)	1048
BfuAI	ACCTGC	1 cut(s)	1140
BisI	GCNGC	5 cut(s)	160, 163, 917, 1192, 1491
BlsI	GCNGC	5 cut(s)	161, 164, 918, 1193, 1492
Bme1390I	CCNGG	3 cut(s)	72, 557, 1441
BmeT110I	CYCGRG	2 cut(s)	299, 1405
BmiI	GGNNCC	1 cut(s)	376
BmrFI	CCNGG	3 cut(s)	72, 557, 1441
BmsI	GCATC	5 cut(s)	217, 265, 638, 1013, 1471
BmtI	GCTAGC	1 cut(s)	1296
BpiI	GAAGAC	1 cut(s)	636
BpmI	CTGGAG	3 cut(s)	248, 871, 1423
Bpu10I	CCTNAGC	1 cut(s)	1433
BpuEI	CTTGAG	3 cut(s)	582, 782, 1375
BpuMI	CCSGG	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	612, 1334
BsaWI	WCCGGW	2 cut(s)	1256, 1323
BsaXI	ACNNNNNCTCC	6 cut(s)	869, 899, 1305, 1335, 1421, 1451
Bse118I	RCCGGY	1 cut(s)	1380
Bse1I	ACTGG	3 cut(s)	41, 1103, 1228
BseAI	TCCGGA	1 cut(s)	1323
BseBI	CCWGG	2 cut(s)	557, 1441
BseDI	CCNNGG	2 cut(s)	612, 1334
BseMII	CTCAG	4 cut(s)	62, 270, 816, 1140
BseNI	ACTGG	3 cut(s)	41, 1103, 1228
BseRI	GAGGAG	1 cut(s)	18
BseXI	GCAGC	2 cut(s)	149, 1178
BseYI	CCCAGC	2 cut(s)	252, 1493
Bsh1285I	CGRYCG	1 cut(s)	576
BshFI	GGCC	1 cut(s)	159
BsiEI	CGRYCG	1 cut(s)	576
BsiHKAI	GWGCWC	3 cut(s)	14, 70, 1131
BsiHKCI	CYCGRG	2 cut(s)	299, 1405
BsiSI	CCGG	4 cut(s)	72, 1257, 1324, 1381
BslFI	GGGAC	1 cut(s)	1094
BsmAI	GTCTC	2 cut(s)	69, 563
BsmBI	CGTCTC	2 cut(s)	69, 563
BsmFI	GGGAC	1 cut(s)	1094
BsmI	GAATGC	3 cut(s)	437, 589, 607
BsnI	GGCC	1 cut(s)	159
BsoBI	CYCGRG	2 cut(s)	299, 1405
Bsp1286I	GDGCHC	3 cut(s)	14, 70, 1131
Bsp13I	TCCGGA	1 cut(s)	1323
BspACI	CCGC	5 cut(s)	24, 160, 731, 916, 1491
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	4 cut(s)	61, 271, 817, 1141
BspEI	TCCGGA	1 cut(s)	1323
BspHI	TCATGA	3 cut(s)	292, 673, 1123
BspLI	GGNNCC	1 cut(s)	376
BspMI	ACCTGC	1 cut(s)	1140
BspOI	GCTAGC	1 cut(s)	1296
BspPI	GGATC	4 cut(s)	369, 382, 825, 1234
BspTI	CTTAAG	1 cut(s)	1048
BsrBI	CCGCTC	1 cut(s)	26
BsrFI	RCCGGY	1 cut(s)	1380
BsrI	ACTGG	3 cut(s)	41, 1103, 1228
BssAI	RCCGGY	1 cut(s)	1380
BssECI	CCNNGG	2 cut(s)	612, 1334
BssSI	CACGAG	1 cut(s)	1368
BssT1I	CCWWGG	2 cut(s)	612, 1334
Bst2BI	CACGAG	1 cut(s)	1368
Bst2UI	CCWGG	2 cut(s)	557, 1441
Bst4CI	ACNGT	3 cut(s)	417, 881, 941
Bst6I	CTCTTC	1 cut(s)	327
BstAFI	CTTAAG	1 cut(s)	1048
BstC8I	GCNNGC	3 cut(s)	804, 873, 1294
BstDEI	CTNAG	8 cut(s)	48, 279, 579, 740, 825, 1140, 1149, 1433
BstHHI	GCGC	2 cut(s)	1137, 1248
BstMAI	GTCTC	2 cut(s)	69, 563
BstMCI	CGRYCG	1 cut(s)	576
BstMWI	GCNNNNNNNGC	3 cut(s)	584, 1337, 1490
BstNI	CCWGG	2 cut(s)	557, 1441
BstNSI	RCATGY	4 cut(s)	480, 493, 607, 916
BstSCI	CCNGG	3 cut(s)	70, 555, 1439
BstV1I	GCAGC	2 cut(s)	149, 1178
BstV2I	GAAGAC	1 cut(s)	636
BstX2I	RGATCY	3 cut(s)	374, 817, 1226
BstYI	RGATCY	3 cut(s)	374, 817, 1226
BsuRI	GGCC	1 cut(s)	159
BtsI	GCAGTG	1 cut(s)	633
BtsIMutI	CAGTG	5 cut(s)	633, 775, 782, 946, 1204
BveI	ACCTGC	1 cut(s)	1140
Cac8I	GCNNGC	3 cut(s)	804, 873, 1294
CciI	TCATGA	3 cut(s)	292, 673, 1123
CfoI	GCGC	2 cut(s)	1137, 1248
Cfr10I	RCCGGY	1 cut(s)	1380
DdeI	CTNAG	8 cut(s)	48, 279, 579, 740, 825, 1140, 1149, 1433
DraI	TTTAAA	1 cut(s)	201
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Ecl136II	GAGCTC	2 cut(s)	12, 68
Eco130I	CCWWGG	2 cut(s)	612, 1334
Eco24I	GRGCYC	2 cut(s)	14, 70
Eco32I	GATATC	1 cut(s)	102
Eco53kI	GAGCTC	2 cut(s)	12, 68
Eco57I	CTGAAG	2 cut(s)	68, 1180
Eco88I	CYCGRG	2 cut(s)	299, 1405
EcoICRI	GAGCTC	2 cut(s)	12, 68
EcoRI	GAATTC	2 cut(s)	113, 845
EcoRII	CCWGG	2 cut(s)	555, 1439
EcoRV	GATATC	1 cut(s)	102
EcoT14I	CCWWGG	2 cut(s)	612, 1334
EcoT22I	ATGCAT	1 cut(s)	609
EcoT38I	GRGCYC	2 cut(s)	14, 70
ErhI	CCWWGG	2 cut(s)	612, 1334
Esp3I	CGTCTC	2 cut(s)	69, 563
FaqI	GGGAC	1 cut(s)	1094
FauI	CCCGC	1 cut(s)	31
FauNDI	CATATG	1 cut(s)	1089
FbaI	TGATCA	1 cut(s)	772
Fnu4HI	GCNGC	5 cut(s)	160, 163, 917, 1192, 1491
FriOI	GRGCYC	2 cut(s)	14, 70
Fsp4HI	GCNGC	5 cut(s)	160, 163, 917, 1192, 1491
FspAI	RTGCGCAY	1 cut(s)	1247
FspBI	CTAG	5 cut(s)	32, 369, 1293, 1341, 1485
FspI	TGCGCA	1 cut(s)	1247
GlaI	GCGC	2 cut(s)	1136, 1247
GluI	GCNGC	5 cut(s)	160, 163, 917, 1192, 1491
GsaI	CCCAGC	2 cut(s)	256, 1497
GsuI	CTGGAG	3 cut(s)	248, 871, 1423
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	4 cut(s)	72, 1257, 1324, 1381
HhaI	GCGC	2 cut(s)	1137, 1248
Hin6I	GCGC	2 cut(s)	1135, 1246
HinP1I	GCGC	2 cut(s)	1135, 1246
HincII	GTYRAC	1 cut(s)	910
HindII	GTYRAC	1 cut(s)	910
HinfI	GANTC	5 cut(s)	757, 965, 1066, 1094, 1120
HpaII	CCGG	4 cut(s)	72, 1257, 1324, 1381
HphI	GGTGA	4 cut(s)	140, 451, 582, 1092
Hpy166II	GTNNAC	1 cut(s)	910
Hpy188I	TCNGA	3 cut(s)	16, 1015, 1150
Hpy8I	GTNNAC	1 cut(s)	910
HpyAV	CCTTC	4 cut(s)	92, 175, 415, 1268
HpyCH4III	ACNGT	3 cut(s)	417, 881, 941
HpyCH4V	TGCA	9 cut(s)	165, 362, 435, 476, 607, 944, 1004, 1109, 1220
HpyF10VI	GCNNNNNNNGC	3 cut(s)	584, 1337, 1490
HpyF3I	CTNAG	8 cut(s)	48, 279, 579, 740, 825, 1140, 1149, 1433
HspAI	GCGC	2 cut(s)	1135, 1246
Kpn2I	TCCGGA	1 cut(s)	1323
Ksp22I	TGATCA	1 cut(s)	772
LmnI	GCTCC	7 cut(s)	31, 73, 229, 890, 1277, 1336, 1442
Lsp1109I	GCAGC	2 cut(s)	149, 1178
LweI	GCATC	5 cut(s)	217, 265, 638, 1013, 1471
MaeI	CTAG	5 cut(s)	32, 369, 1293, 1341, 1485
MaeIII	GTNAC	2 cut(s)	1055, 1424
MbiI	CCGCTC	1 cut(s)	26
MboII	GAAGA	6 cut(s)	344, 349, 454, 536, 641, 1089
MflI	RGATCY	3 cut(s)	374, 817, 1226
MhlI	GDGCHC	3 cut(s)	14, 70, 1131
MluCI	AATT	9 cut(s)	41, 113, 263, 269, 327, 380, 845, 996, 1396
MmeI	TCCRAC	1 cut(s)	216
Mph1103I	ATGCAT	1 cut(s)	609
MroI	TCCGGA	1 cut(s)	1323
MroXI	GAANNNNTTC	1 cut(s)	720
MseI	TTAA	6 cut(s)	200, 273, 314, 681, 687, 1049
MslI	CAYNNNNRTG	4 cut(s)	475, 672, 1088, 1389
MspA1I	CMGCKG	3 cut(s)	162, 536, 1493
MspCI	CTTAAG	1 cut(s)	1048
MspI	CCGG	4 cut(s)	72, 1257, 1324, 1381
MspR9I	CCNGG	3 cut(s)	72, 557, 1441
Mva1269I	GAATGC	3 cut(s)	437, 589, 607
MvaI	CCWGG	2 cut(s)	557, 1441
MwoI	GCNNNNNNNGC	3 cut(s)	584, 1337, 1490
NciI	CCSGG	1 cut(s)	72
NdeI	CATATG	1 cut(s)	1089
NheI	GCTAGC	1 cut(s)	1292
NlaIV	GGNNCC	1 cut(s)	376
NmuCI	GTSAC	1 cut(s)	1055
NsbI	TGCGCA	1 cut(s)	1247
NsiI	ATGCAT	1 cut(s)	609
NspI	RCATGY	4 cut(s)	480, 493, 607, 916
PagI	TCATGA	3 cut(s)	292, 673, 1123
PaqCI	CACCTGC	1 cut(s)	1140
PctI	GAATGC	3 cut(s)	437, 589, 607
PdmI	GAANNNNTTC	1 cut(s)	720
PfeI	GAWTC	5 cut(s)	757, 965, 1066, 1094, 1120
PfoI	TCCNGGA	1 cut(s)	70
PkrI	GCNGC	5 cut(s)	161, 164, 918, 1193, 1492
Ple19I	CGATCG	1 cut(s)	576
Psp124BI	GAGCTC	2 cut(s)	14, 70
Psp6I	CCWGG	2 cut(s)	555, 1439
PspFI	CCCAGC	2 cut(s)	252, 1493
PspGI	CCWGG	2 cut(s)	555, 1439
PspN4I	GGNNCC	1 cut(s)	376
PsuI	RGATCY	3 cut(s)	374, 817, 1226
PvuI	CGATCG	1 cut(s)	576
PvuII	CAGCTG	1 cut(s)	536
RseI	CAYNNNNRTG	4 cut(s)	475, 672, 1088, 1389
SacI	GAGCTC	2 cut(s)	14, 70
SaqAI	TTAA	6 cut(s)	200, 273, 314, 681, 687, 1049
SatI	GCNGC	5 cut(s)	160, 163, 917, 1192, 1491
ScrFI	CCNGG	3 cut(s)	72, 557, 1441
SduI	GDGCHC	3 cut(s)	14, 70, 1131
SfaNI	GCATC	5 cut(s)	217, 265, 638, 1013, 1471
SmiMI	CAYNNNNRTG	4 cut(s)	475, 672, 1088, 1389
SmlI	CTYRAG	4 cut(s)	597, 761, 1048, 1354
SmoI	CTYRAG	4 cut(s)	597, 761, 1048, 1354
Sse9I	AATT	9 cut(s)	41, 113, 263, 269, 327, 380, 845, 996, 1396
SsiI	CCGC	5 cut(s)	24, 160, 731, 916, 1491
SspI	AATATT	3 cut(s)	171, 685, 951
SspMI	CTAG	5 cut(s)	32, 369, 1293, 1341, 1485
SstI	GAGCTC	2 cut(s)	14, 70
StyD4I	CCNGG	3 cut(s)	70, 555, 1439
StyI	CCWWGG	2 cut(s)	612, 1334
TaaI	ACNGT	3 cut(s)	417, 881, 941
TaqI	TCGA	4 cut(s)	117, 151, 174, 217
TasI	AATT	9 cut(s)	41, 113, 263, 269, 327, 380, 845, 996, 1396
TauI	GCSGC	3 cut(s)	162, 919, 1493
TfiI	GAWTC	5 cut(s)	757, 965, 1066, 1094, 1120
Tru1I	TTAA	6 cut(s)	200, 273, 314, 681, 687, 1049
Tru9I	TTAA	6 cut(s)	200, 273, 314, 681, 687, 1049
TscAI	CASTG	5 cut(s)	640, 775, 782, 946, 1204
TseFI	GTSAC	1 cut(s)	1055
TseI	GCWGC	2 cut(s)	162, 1191
Tsp45I	GTSAC	1 cut(s)	1055
TspRI	CASTG	5 cut(s)	640, 775, 782, 946, 1204
Vha464I	CTTAAG	1 cut(s)	1048
XapI	RAATTY	5 cut(s)	41, 113, 263, 845, 1396
XbaI	TCTAGA	1 cut(s)	31
XceI	RCATGY	4 cut(s)	480, 493, 607, 916
XmnI	GAANNNNTTC	1 cut(s)	720
XspI	CTAG	5 cut(s)	32, 369, 1293, 1341, 1485
Zsp2I	ATGCAT	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.