Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0014737

Physical Location & Seq

Genomic Coordinates Reverse (-)

52367552 .. 52374688

Gene Structure 7137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014378

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGTTTGCAGAAGATTGCTCAAGAACAGCGTTAAGGGTCAAGTTCATATATTCAAGCTTTTCCTAATTCCCTTCAACCATGGCATGTGCCCACAAGCCCTTGACTTGGAGTTACAGGACAGTAGTAAACTAGTAATGGAAATTACTAAGGCCCTTTATGTTGCTGACGCTGAAGACACTGCCCGAACGAGATGCCGAAAGGTGTATGCTCATGCTCATGATTATAATATTCACTCCATCTCAAATAATAGCGATGGTGAAACTTTTCTTTCTGCAGATGACCTTAGAATAAACTTGTGGAATCTTGAGATCAGCGATCAATTTTGGATCTTTCTGCTGATTCATGAAATGCATGTTTATTCAGAGGTCATAACATCGGCTGAATTCCATCCCGTTCATTGTAATCTGCTTGCATACAGCAGCTCAAGAGGTTTTATTTGCTTAGTTGACATGAGGCAGTCAGCTTTATGCGATAACAGTGCAAGAATATTACAAGATGGAGATTCAAATGCTTTAAAGTCATTTTTCACAGAAATTATTGCATCCATCTCTGACATCAAGTTTTCAAAGGATGGGCGGTACATCTTAAGTCGTGACTACATGAATCTAAAGCTCTGGGACGTGCATATGGATTCTTCACCAGTTGCAATATACAGGATTCATGAGCACCTGCGCCCTAAGTTATCTGAGTTGTATACTAATGATCGCATATTTGATAAATTTGGGTGCTGCTTCAGTGGAGATGGACTTCATTATGCAACTGGGTCTTATAGCAACCTAGTACGCATTTTCTCCCATGGTATTGGAGGTGAAGAAGGAACTACAATAGAAGCTAGCAAAACTCCTAACAGGAAGCCACTTCCGCGGGCTGCTCCAAGGGTTAGGAGGTCATCCTTGAGCAACCTGGCAAGAGGATTTTACCGGCATGGGCATGAAAATTCAAGCTCGGCCGGTAACGATATCAGTTATGACTTCAGCTCCAAACTATTACAGGTGGCATGGCATCCAGAAGCAAACTTAATTGCTAGTGCAGCTGGGAATAGCTTGTTCATGTATTATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0000278 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008287 GO:0009987 GO:0010921 GO:0016311 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032502 GO:0032991 GO:0035303 GO:0035304 GO:0036211 GO:0043170 GO:0043412 GO:0043666 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0060255 GO:0065007 GO:0065009 GO:0070262 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

WD40

Protein Analysis

355

Amino Acids

40.1

Weight (kDa)

6.78

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014737)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05510
malus_domestica	MD14G1177400.v1.1
prunus_persica	Prupe.5G171300_v2.0.a1 Prupe.5G171300_v2.0.a1
pyrus_communis	pycom14g14830
rosa_chinensis	RchiOBHm_Chr7g0193311
rosa_laevigata	RLG00000004280 RLG00000014378
rosa_multiflora	Rmu_ssc0000092.1_g000013
rosa_roxburghii	Rroxscaffold_3G00262220 Rroxscaffold_4G00314280
rosa_rugosa	Rorug07G0008800
rosa_samantha	Rh7AG134400 Rh7BG135400 Rh7CG138500 Rh7DG136500
rosa_wichuraiana	Rw7G011500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	225
AarI	CACCTGC	1 cut(s)	678
Acc36I	ACCTGC	1 cut(s)	678
AccI	GTMKAC	1 cut(s)	695
AccII	CGCG	1 cut(s)	865
AciI	CCGC	3 cut(s)	577, 863, 865
AclWI	GGATC	1 cut(s)	335
AcoI	YGGCCR	1 cut(s)	948
AcsI	RAATTY	3 cut(s)	383, 719, 937
AcuI	CTGAAG	3 cut(s)	192, 718, 958
AfaI	GTAC	2 cut(s)	581, 783
AfiI	CCNNNNNNNGG	1 cut(s)	106
AflII	CTTAAG	1 cut(s)	586
AgsI	TTSAA	5 cut(s)	55, 76, 507, 567, 942
AhlI	ACTAGT	1 cut(s)	130
AjiI	CACGTC	1 cut(s)	622
AjnI	CCWGG	1 cut(s)	903
AluBI	AGCT	9 cut(s)	58, 423, 464, 613, 833, 945, 978, 1034, 1044
AluI	AGCT	9 cut(s)	58, 423, 464, 613, 833, 945, 978, 1034, 1044
Alw21I	GWGCWC	1 cut(s)	669
AlwI	GGATC	1 cut(s)	335
AoxI	GGCC	2 cut(s)	150, 948
ApeKI	GCWGC	4 cut(s)	420, 729, 869, 1031
ApoI	RAATTY	3 cut(s)	383, 719, 937
Asp700I	GAANNNNTTC	1 cut(s)	264
AspLEI	GCGC	1 cut(s)	675
AspS9I	GGNCC	1 cut(s)	151
AsuHPI	GGTGA	3 cut(s)	269, 630, 821
AsuNHI	GCTAGC	1 cut(s)	833
BaeGI	GKGCMC	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	669
BbvI	GCAGC	4 cut(s)	432, 716, 856, 1043
BccI	CCATC	7 cut(s)	245, 248, 396, 491, 554, 566, 737
BcgI	CGANNNNNNTGC	4 cut(s)	174, 208, 461, 495
BciT130I	CCWGG	1 cut(s)	905
BcuI	ACTAGT	1 cut(s)	130
BfaI	CTAG	4 cut(s)	131, 779, 834, 1026
BfmI	CTRYAG	1 cut(s)	273
BfrI	CTTAAG	1 cut(s)	586
BfuAI	ACCTGC	1 cut(s)	678
BisI	GCNGC	4 cut(s)	421, 730, 870, 1032
BlsI	GCNGC	4 cut(s)	422, 731, 871, 1033
Bme1390I	CCNGG	1 cut(s)	905
BmgBI	CACGTC	1 cut(s)	622
BmgT120I	GGNCC	1 cut(s)	151
BmrFI	CCNGG	1 cut(s)	905
BmrI	ACTGGG	1 cut(s)	771
BmsI	GCATC	3 cut(s)	182, 551, 1012
BmtI	GCTAGC	1 cut(s)	837
BmuI	ACTGGG	1 cut(s)	771
BpiI	GAAGAC	1 cut(s)	180
BpuEI	CTTGAG	4 cut(s)	5, 326, 409, 916
BsaJI	CCNNGG	4 cut(s)	79, 796, 863, 875
BsaXI	ACNNNNNCTCC	2 cut(s)	962, 992
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse118I	RCCGGY	2 cut(s)	921, 950
Bse1I	ACTGG	2 cut(s)	641, 766
BseBI	CCWGG	1 cut(s)	905
BseDI	CCNNGG	4 cut(s)	79, 796, 863, 875
BseGI	GGATG	5 cut(s)	388, 542, 577, 890, 1003
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	678
BseNI	ACTGG	2 cut(s)	641, 766
BseSI	GKGCMC	1 cut(s)	92
BseX3I	CGGCCG	1 cut(s)	948
BseXI	GCAGC	4 cut(s)	432, 716, 856, 1043
BseYI	CCCAGC	1 cut(s)	1034
BsgI	GTGCAG	1 cut(s)	1050
Bsh1236I	CGCG	1 cut(s)	865
Bsh1285I	CGRYCG	1 cut(s)	951
BshFI	GGCC	2 cut(s)	152, 950
BsiEI	CGRYCG	1 cut(s)	951
BsiHKAI	GWGCWC	1 cut(s)	669
BsiSI	CCGG	2 cut(s)	922, 951
BslFI	GGGAC	1 cut(s)	632
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	632
BsnI	GGCC	2 cut(s)	152, 950
Bsp1286I	GDGCHC	2 cut(s)	92, 669
Bsp143I	GATC	4 cut(s)	309, 316, 327, 703
Bsp19I	CCATGG	2 cut(s)	79, 796
BspACI	CCGC	3 cut(s)	577, 863, 865
BspANI	GGCC	2 cut(s)	152, 950
BspCNI	CTCAG	1 cut(s)	679
BspFNI	CGCG	1 cut(s)	865
BspHI	TCATGA	3 cut(s)	217, 343, 661
BspMAI	CTGCAG	1 cut(s)	277
BspMI	ACCTGC	1 cut(s)	678
BspOI	GCTAGC	1 cut(s)	837
BspPI	GGATC	1 cut(s)	335
BspTI	CTTAAG	1 cut(s)	586
BsrFI	RCCGGY	2 cut(s)	921, 950
BsrI	ACTGG	2 cut(s)	641, 766
BssAI	RCCGGY	2 cut(s)	921, 950
BssECI	CCNNGG	4 cut(s)	79, 796, 863, 875
BssMI	GATC	4 cut(s)	309, 316, 327, 703
BssNAI	GTATAC	1 cut(s)	696
BssT1I	CCWWGG	3 cut(s)	79, 796, 875
Bst1107I	GTATAC	1 cut(s)	696
Bst2UI	CCWGG	1 cut(s)	905
Bst4CI	ACNGT	2 cut(s)	122, 479
BstAFI	CTTAAG	1 cut(s)	586
BstC8I	GCNNGC	3 cut(s)	411, 835, 867
BstDEI	CTNAG	5 cut(s)	147, 284, 442, 678, 687
BstDSI	CCRYGG	3 cut(s)	79, 796, 863
BstF5I	GGATG	5 cut(s)	388, 542, 577, 890, 1003
BstFNI	CGCG	1 cut(s)	865
BstHHI	GCGC	1 cut(s)	675
BstKTI	GATC	4 cut(s)	312, 319, 330, 706
BstMBI	GATC	4 cut(s)	309, 316, 327, 703
BstMCI	CGRYCG	1 cut(s)	951
BstMWI	GCNNNNNNNGC	2 cut(s)	862, 1031
BstNI	CCWGG	1 cut(s)	905
BstNSI	RCATGY	2 cut(s)	88, 356
BstSCI	CCNGG	1 cut(s)	903
BstSFI	CTRYAG	1 cut(s)	273
BstSLI	GKGCMC	1 cut(s)	92
BstUI	CGCG	1 cut(s)	865
BstV1I	GCAGC	4 cut(s)	432, 716, 856, 1043
BstV2I	GAAGAC	1 cut(s)	180
BstX2I	RGATCY	1 cut(s)	327
BstXI	CCANNNNNNTGG	1 cut(s)	803
BstYI	RGATCY	1 cut(s)	327
BstZ17I	GTATAC	1 cut(s)	696
BstZI	CGGCCG	1 cut(s)	948
BsuRI	GGCC	2 cut(s)	152, 950
BtgI	CCRYGG	3 cut(s)	79, 796, 863
BtgZI	GCGATG	1 cut(s)	267
BtrI	CACGTC	1 cut(s)	622
BtsCI	GGATG	5 cut(s)	388, 542, 577, 890, 1003
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	3 cut(s)	177, 484, 742
BveI	ACCTGC	1 cut(s)	678
Cac8I	GCNNGC	3 cut(s)	411, 835, 867
CciI	TCATGA	3 cut(s)	217, 343, 661
CfoI	GCGC	1 cut(s)	675
Cfr10I	RCCGGY	2 cut(s)	921, 950
Cfr13I	GGNCC	1 cut(s)	151
Cfr42I	CCGCGG	1 cut(s)	866
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	2 cut(s)	580, 782
CviQI	GTAC	2 cut(s)	580, 782
DdeI	CTNAG	5 cut(s)	147, 284, 442, 678, 687
DpnI	GATC	4 cut(s)	311, 318, 329, 705
DpnII	GATC	4 cut(s)	309, 316, 327, 703
DraI	TTTAAA	1 cut(s)	516
EaeI	YGGCCR	1 cut(s)	948
EagI	CGGCCG	1 cut(s)	948
EclXI	CGGCCG	1 cut(s)	948
Eco130I	CCWWGG	3 cut(s)	79, 796, 875
Eco32I	GATATC	1 cut(s)	961
Eco52I	CGGCCG	1 cut(s)	948
Eco57I	CTGAAG	3 cut(s)	192, 718, 958
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	903
EcoRV	GATATC	1 cut(s)	961
EcoT14I	CCWWGG	3 cut(s)	79, 796, 875
EcoT22I	ATGCAT	2 cut(s)	354, 1063
ErhI	CCWWGG	3 cut(s)	79, 796, 875
FaqI	GGGAC	1 cut(s)	632
FauI	CCCGC	1 cut(s)	858
FauNDI	CATATG	1 cut(s)	627
FblI	GTMKAC	1 cut(s)	695
Fnu4HI	GCNGC	4 cut(s)	421, 730, 870, 1032
FokI	GGATG	5 cut(s)	375, 529, 584, 877, 990
Fsp4HI	GCNGC	4 cut(s)	421, 730, 870, 1032
FspBI	CTAG	4 cut(s)	131, 779, 834, 1026
GlaI	GCGC	1 cut(s)	674
GluI	GCNGC	4 cut(s)	421, 730, 870, 1032
GsaI	CCCAGC	1 cut(s)	1038
HaeIII	GGCC	2 cut(s)	152, 950
HapII	CCGG	2 cut(s)	922, 951
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	675
Hin6I	GCGC	1 cut(s)	673
HinP1I	GCGC	1 cut(s)	673
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	6 cut(s)	301, 340, 503, 604, 632, 658
HpaII	CCGG	2 cut(s)	922, 951
HphI	GGTGA	3 cut(s)	269, 630, 821
Hpy166II	GTNNAC	3 cut(s)	128, 448, 696
Hpy188I	TCNGA	3 cut(s)	364, 553, 688
Hpy188III	TCNNGA	8 cut(s)	22, 218, 305, 344, 426, 593, 662, 1007
Hpy8I	GTNNAC	3 cut(s)	128, 448, 696
HpyAV	CCTTC	2 cut(s)	82, 809
HpyCH4III	ACNGT	2 cut(s)	122, 479
HpyCH4IV	ACGT	1 cut(s)	621
HpyF10VI	GCNNNNNNNGC	2 cut(s)	862, 1031
HpyF3I	CTNAG	5 cut(s)	147, 284, 442, 678, 687
HpySE526I	ACGT	1 cut(s)	621
HspAI	GCGC	1 cut(s)	673
KspI	CCGCGG	1 cut(s)	866
Kzo9I	GATC	4 cut(s)	309, 316, 327, 703
LmnI	GCTCC	2 cut(s)	877, 983
Lsp1109I	GCAGC	4 cut(s)	432, 716, 856, 1043
LweI	GCATC	3 cut(s)	182, 551, 1012
MaeI	CTAG	4 cut(s)	131, 779, 834, 1026
MaeII	ACGT	1 cut(s)	621
MaeIII	GTNAC	3 cut(s)	111, 593, 953
MalI	GATC	4 cut(s)	311, 318, 329, 705
MboI	GATC	4 cut(s)	309, 316, 327, 703
MboII	GAAGA	4 cut(s)	24, 185, 627, 824
MflI	RGATCY	1 cut(s)	327
MhlI	GDGCHC	2 cut(s)	92, 669
MluCI	AATT	8 cut(s)	66, 141, 320, 383, 534, 719, 937, 1020
MnlI	CCTC	6 cut(s)	358, 422, 447, 800, 879, 905
Mph1103I	ATGCAT	2 cut(s)	354, 1063
MroXI	GAANNNNTTC	1 cut(s)	264
MseI	TTAA	4 cut(s)	33, 515, 587, 1019
MslI	CAYNNNNRTG	2 cut(s)	216, 930
MspA1I	CMGCKG	2 cut(s)	865, 1034
MspCI	CTTAAG	1 cut(s)	586
MspI	CCGG	2 cut(s)	922, 951
MspR9I	CCNGG	1 cut(s)	905
MvaI	CCWGG	1 cut(s)	905
MvnI	CGCG	1 cut(s)	865
MwoI	GCNNNNNNNGC	2 cut(s)	862, 1031
NcoI	CCATGG	2 cut(s)	79, 796
NdeI	CATATG	1 cut(s)	627
NdeII	GATC	4 cut(s)	309, 316, 327, 703
NheI	GCTAGC	1 cut(s)	833
NmeAIII	GCCGAG	1 cut(s)	926
NmuCI	GTSAC	1 cut(s)	593
NsiI	ATGCAT	2 cut(s)	354, 1063
NspI	RCATGY	2 cut(s)	88, 356
PagI	TCATGA	3 cut(s)	217, 343, 661
PaqCI	CACCTGC	1 cut(s)	678
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	6 cut(s)	301, 340, 503, 604, 632, 658
PkrI	GCNGC	4 cut(s)	422, 731, 871, 1033
PsiI	TTATAA	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	903
PspFI	CCCAGC	1 cut(s)	1034
PspGI	CCWGG	1 cut(s)	903
PspPI	GGNCC	1 cut(s)	151
PstI	CTGCAG	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	327
PvuII	CAGCTG	1 cut(s)	1034
RsaI	GTAC	2 cut(s)	581, 783
RsaNI	GTAC	2 cut(s)	580, 782
RseI	CAYNNNNRTG	2 cut(s)	216, 930
SacII	CCGCGG	1 cut(s)	866
SaqAI	TTAA	4 cut(s)	33, 515, 587, 1019
SatI	GCNGC	4 cut(s)	421, 730, 870, 1032
Sau3AI	GATC	4 cut(s)	309, 316, 327, 703
Sau96I	GGNCC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	905
SduI	GDGCHC	2 cut(s)	92, 669
SfaNI	GCATC	3 cut(s)	182, 551, 1012
SfcI	CTRYAG	1 cut(s)	273
Sfr303I	CCGCGG	1 cut(s)	866
SgrBI	CCGCGG	1 cut(s)	866
SmiMI	CAYNNNNRTG	2 cut(s)	216, 930
SmlI	CTYRAG	5 cut(s)	20, 305, 424, 586, 895
SmoI	CTYRAG	5 cut(s)	20, 305, 424, 586, 895
SpeI	ACTAGT	1 cut(s)	130
Sse9I	AATT	8 cut(s)	66, 141, 320, 383, 534, 719, 937, 1020
SsiI	CCGC	3 cut(s)	577, 863, 865
SspI	AATATT	2 cut(s)	229, 489
SspMI	CTAG	4 cut(s)	131, 779, 834, 1026
StyD4I	CCNGG	1 cut(s)	903
StyI	CCWWGG	3 cut(s)	79, 796, 875
TaaI	ACNGT	2 cut(s)	122, 479
TaiI	ACGT	1 cut(s)	624
TasI	AATT	8 cut(s)	66, 141, 320, 383, 534, 719, 937, 1020
TfiI	GAWTC	6 cut(s)	301, 340, 503, 604, 632, 658
Tru1I	TTAA	4 cut(s)	33, 515, 587, 1019
Tru9I	TTAA	4 cut(s)	33, 515, 587, 1019
TscAI	CASTG	3 cut(s)	184, 484, 742
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	4 cut(s)	420, 729, 869, 1031
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	9 cut(s)	35, 332, 360, 386, 617, 650, 740, 948, 1039
TspRI	CASTG	3 cut(s)	184, 484, 742
Vha464I	CTTAAG	1 cut(s)	586
XapI	RAATTY	3 cut(s)	383, 719, 937
XceI	RCATGY	2 cut(s)	88, 356
XmiI	GTMKAC	1 cut(s)	695
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	4 cut(s)	131, 779, 834, 1026
Zsp2I	ATGCAT	2 cut(s)	354, 1063

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.