Rroxscaffold_4G00314280

phosphatase 2A 55 kDa regulatory subunit B

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
38273906 .. 38278425
4520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00314280.1

Sequence Viewer

Length: 1353 bp
ATGCTTTCCGAAACTCTCTCGAAAGCACATCAACTCCGCTTCCACTTGTCCCTGTTCTTTATCCGCCTCATCGAAACCTCCAAGGCTTTTTCACCTAGCTCAGCCATGACTCCCAGCTCCGACCACCCTCTCGACCGGAAGTTCTCTCGGGTTTTCGGCGAACGAGCTCCGGGTGATGAACTTCGGGAAGTTGATGTGATATACGCTATTGGATTCGACAACAATGGTGATCACCTTGCCATTGGAGATCGAGGTGGCCGCTGCGTAATCTTCGAGAGGAAGGATGGGAAACACAATTTGGATGAGCACCGTTCTCAACTTGAATCGGAGCGAGTTGGACGTTACGTCCACCCAAAGCATCCGGAATTCCAATTCAAGACCGAGTTTCGAGTCATGAACCGGGGTAAGGTGAAGAAAGTAAAAGAAATGAACCCTGTTCCACATATGAGTCCGGATAATGTGCTTTTGTCTCGAAAAGAGTTTCATCGTAGAGAAGATAAACCTCTTGTTGCTAATGGCTATCGTCAAGAATGGGCGGGGAAGATGGCTAATAACGTGTCCCGTATCAAGACATACATGCCAAGGTTGCGACACCGAAGACACCGCCCAAACGAGACGCCGAAAGGTGGTTTGTCATTCGTTGAATTTTTGGGTTCTCGAAAGTATAGTTATATCAAGCGAAATGGAGGGCAGGATGATATCAAAGCTGTGCAGGTGACTGATGGTTTGAGTTGGTGGACGATCGTGGATCGTATTGTGAGCGGTTTTGGTGTGTATTGTGAAAGTGAAGACGCAGCGAGATTAGAGTCGAATGGGAATTCAACAGCTGAGACTTTGAAACATTTCCCCGGGAGAAAATTAGGCAGAAAATATGGTGCTGTTGAAATCCGAGTAGGGTCACTCAAGAAGGTTTTGGTGGGTGATGCAGAAACCTGGTCTCATTATCGGTATCGAGCTCCAACCCACGGGGCCGAGGAGGGCTGGAGATCCACCACAATATTCATCAACACCGCCGCGTCCACCGACCCGGGTAATTTGCGGATGAAGCTCCAAGTCGAGTTAGCGAGAGACGGCGGCGGGATTTCCTCGGTTGAGGCCGCCGCCGCCGCCACCACCACCACCGGAAACGGCGGATCCCTACCACTACCGGCACCAAAAAGCACCAACTCCGCTGCCTCCATTTCTGTTCGCACCCCCAACACACGGCGCTACAGCTCCAATCCTTCAAATCGCAGCCGCAAAGAACCGGTAAAACAACACCACATGGACGGGTTCGTGACTCCTCCTCCACTAGCACGAGTTCCACGCCACCCCACCTCTCTGCCGGACGACGCCGTTTCGGCTCGGCCCTAA

Protein Analysis

450

Amino Acids

50.43

Weight (kDa)

9.97

Isoelectric Point (pI)

36.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014737)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 703
Acc36I ACCTGC 1 cut(s) 703
AccB1I GGYRCC 1 cut(s) 1150
AccBSI CCGCTC 1 cut(s) 762
AccII CGCG 1 cut(s) 1016
AccIII TCCGGA 2 cut(s) 361, 451
AclWI GGATC 4 cut(s) 756, 981, 1128, 1141
AcoI YGGCCR 1 cut(s) 256
AcsI RAATTY 3 cut(s) 365, 644, 817
AcyI GRCGYC 2 cut(s) 617, 1332
AfiI CCNNNNNNNGG 4 cut(s) 406, 626, 965, 1203
AflIII ACRYGT 1 cut(s) 555
AgeI ACCGGT 1 cut(s) 1246
AgsI TTSAA 7 cut(s) 323, 376, 644, 822, 838, 884, 1227
AhdI GACNNNNNGTC 1 cut(s) 344
AjnI CCWGG 1 cut(s) 932
AjuI GAANNNNNNNTTGG 2 cut(s) 281, 313
AluBI AGCT 8 cut(s) 99, 117, 167, 707, 827, 956, 1048, 1215
AluI AGCT 8 cut(s) 99, 117, 167, 707, 827, 956, 1048, 1215
Alw21I GWGCWC 3 cut(s) 169, 309, 958
Alw26I GTCTC 5 cut(s) 474, 608, 824, 942, 1062
AlwI GGATC 4 cut(s) 756, 981, 1128, 1141
Ama87I CYCGRG 3 cut(s) 147, 848, 1027
Aor13HI TCCGGA 2 cut(s) 361, 451
AoxI GGCC 4 cut(s) 256, 969, 1095, 1346
ApeKI GCWGC 4 cut(s) 261, 794, 1172, 1233
ApoI RAATTY 3 cut(s) 365, 644, 817
ArsI GACNNNNNNTTYG 2 cut(s) 709, 741
AsiGI ACCGGT 1 cut(s) 1246
Asp700I GAANNNNTTC 1 cut(s) 842
AspLEI GCGC 1 cut(s) 1209
AspS9I GGNCC 2 cut(s) 969, 1347
AsuC2I CCSGG 6 cut(s) 171, 401, 849, 850, 1028, 1029
AsuHPI GGTGA 7 cut(s) 84, 185, 224, 239, 421, 727, 932
AvaI CYCGRG 3 cut(s) 147, 848, 1027
BamHI GGATCC 1 cut(s) 1133
BanI GGYRCC 1 cut(s) 1150
BanII GRGCYC 2 cut(s) 169, 958
BauI CACGAG 1 cut(s) 1296
BbsI GAAGAC 2 cut(s) 604, 795
Bbv12I GWGCWC 3 cut(s) 169, 309, 958
BbvI GCAGC 4 cut(s) 248, 806, 1159, 1245
BccI CCATC 3 cut(s) 278, 538, 716
BceAI ACGGC 4 cut(s) 1087, 1144, 1220, 1319
BciT130I CCWGG 1 cut(s) 934
BclI TGATCA 1 cut(s) 229
BcnI CCSGG 6 cut(s) 171, 401, 849, 850, 1028, 1029
BcoDI GTCTC 5 cut(s) 474, 608, 824, 942, 1062
BfaI CTAG 2 cut(s) 96, 1292
BfmI CTRYAG 1 cut(s) 1210
BfoI RGCGCY 1 cut(s) 1210
BfuAI ACCTGC 1 cut(s) 703
BglI GCCNNNNNGGC 1 cut(s) 1340
BlpI GCTNAGC 1 cut(s) 100
Bme1390I CCNGG 7 cut(s) 171, 401, 849, 850, 934, 1028, 1029
BmeRI GACNNNNNGTC 1 cut(s) 344
BmeT110I CYCGRG 3 cut(s) 147, 848, 1027
BmgT120I GGNCC 2 cut(s) 969, 1347
BmiI GGNNCC 3 cut(s) 970, 1135, 1152
BmrFI CCNGG 7 cut(s) 171, 401, 849, 850, 934, 1028, 1029
BmsI GCATC 2 cut(s) 367, 913
BpiI GAAGAC 2 cut(s) 604, 795
BpmI CTGGAG 1 cut(s) 1003
Bpu1102I GCTNAGC 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 887
BpuMI CCSGG 6 cut(s) 171, 401, 849, 850, 1028, 1029
BsaHI GRCGYC 2 cut(s) 617, 1332
BsaI GGTCTC 1 cut(s) 942
BsaJI CCNNGG 9 cut(s) 81, 400, 581, 847, 848, 964, 972, 1027, 1086
BsaWI WCCGGW 5 cut(s) 135, 361, 451, 1121, 1246
BsaXI ACNNNNNCTCC 4 cut(s) 18, 48, 1270, 1300
Bsc4I CCNNNNNNNGG 4 cut(s) 406, 626, 965, 1203
Bse118I RCCGGY 2 cut(s) 1147, 1246
BseAI TCCGGA 2 cut(s) 361, 451
BseBI CCWGG 1 cut(s) 934
BseDI CCNNGG 9 cut(s) 81, 400, 581, 847, 848, 964, 972, 1027, 1086
BseGI GGATG 5 cut(s) 289, 307, 358, 700, 1047
BseLI CCNNNNNNNGG 4 cut(s) 406, 626, 965, 1203
BseMII CTCAG 2 cut(s) 114, 819
BseRI GAGGAG 3 cut(s) 989, 1272, 1275
BseXI GCAGC 4 cut(s) 248, 806, 1159, 1245
BseYI CCCAGC 1 cut(s) 113
BsgI GTGCAG 1 cut(s) 731
Bsh1236I CGCG 1 cut(s) 1016
Bsh1285I CGRYCG 2 cut(s) 136, 744
BshFI GGCC 4 cut(s) 258, 971, 1097, 1348
BshNI GGYRCC 1 cut(s) 1150
BshTI ACCGGT 1 cut(s) 1246
BsiEI CGRYCG 2 cut(s) 136, 744
BsiHKAI GWGCWC 3 cut(s) 169, 309, 958
BsiHKCI CYCGRG 3 cut(s) 147, 848, 1027
BslFI GGGAC 2 cut(s) 34, 544
BslI CCNNNNNNNGG 4 cut(s) 406, 626, 965, 1203
BsmAI GTCTC 5 cut(s) 474, 608, 824, 942, 1062
BsmBI CGTCTC 2 cut(s) 608, 1062
BsmFI GGGAC 2 cut(s) 34, 544
BsnI GGCC 4 cut(s) 258, 971, 1097, 1348
Bso31I GGTCTC 1 cut(s) 942
BsoBI CYCGRG 3 cut(s) 147, 848, 1027
Bsp1286I GDGCHC 3 cut(s) 169, 309, 958
Bsp13I TCCGGA 2 cut(s) 361, 451
Bsp143I GATC 6 cut(s) 229, 247, 741, 748, 986, 1133
Bsp1720I GCTNAGC 1 cut(s) 100
BspANI GGCC 4 cut(s) 258, 971, 1097, 1348
BspCNI CTCAG 2 cut(s) 113, 820
BspEI TCCGGA 2 cut(s) 361, 451
BspFNI CGCG 1 cut(s) 1016
BspHI TCATGA 1 cut(s) 393
BspLI GGNNCC 3 cut(s) 970, 1135, 1152
BspMI ACCTGC 1 cut(s) 703
BspPI GGATC 4 cut(s) 756, 981, 1128, 1141
BspT107I GGYRCC 1 cut(s) 1150
BspTNI GGTCTC 1 cut(s) 942
BsrBI CCGCTC 1 cut(s) 762
BsrFI RCCGGY 2 cut(s) 1147, 1246
BssAI RCCGGY 2 cut(s) 1147, 1246
BssECI CCNNGG 9 cut(s) 81, 400, 581, 847, 848, 964, 972, 1027, 1086
BssMI GATC 6 cut(s) 229, 247, 741, 748, 986, 1133
BssNI GRCGYC 2 cut(s) 617, 1332
BssSI CACGAG 1 cut(s) 1296
BssT1I CCWWGG 2 cut(s) 81, 581
Bst2BI CACGAG 1 cut(s) 1296
Bst2UI CCWGG 1 cut(s) 934
Bst4CI ACNGT 1 cut(s) 311
BstACI GRCGYC 2 cut(s) 617, 1332
BstDEI CTNAG 2 cut(s) 100, 828
BstDSI CCRYGG 1 cut(s) 964
BstF5I GGATG 5 cut(s) 289, 307, 358, 700, 1047
BstFNI CGCG 1 cut(s) 1016
BstH2I RGCGCY 1 cut(s) 1210
BstHHI GCGC 1 cut(s) 1209
BstKTI GATC 6 cut(s) 232, 250, 744, 751, 989, 1136
BstMAI GTCTC 5 cut(s) 474, 608, 824, 942, 1062
BstMBI GATC 6 cut(s) 229, 247, 741, 748, 986, 1133
BstMCI CGRYCG 2 cut(s) 136, 744
BstMWI GCNNNNNNNGC 5 cut(s) 586, 1045, 1103, 1106, 1340
BstNI CCWGG 1 cut(s) 934
BstNSI RCATGY 1 cut(s) 580
BstSCI CCNGG 7 cut(s) 169, 399, 847, 848, 932, 1026, 1027
BstSFI CTRYAG 1 cut(s) 1210
BstUI CGCG 1 cut(s) 1016
BstV1I GCAGC 4 cut(s) 248, 806, 1159, 1245
BstV2I GAAGAC 2 cut(s) 604, 795
BstX2I RGATCY 2 cut(s) 986, 1133
BstYI RGATCY 2 cut(s) 986, 1133
BsuRI GGCC 4 cut(s) 258, 971, 1097, 1348
BtgI CCRYGG 1 cut(s) 964
BtsCI GGATG 5 cut(s) 289, 307, 358, 700, 1047
BveI ACCTGC 1 cut(s) 703
CciI TCATGA 1 cut(s) 393
CfoI GCGC 1 cut(s) 1209
Cfr10I RCCGGY 2 cut(s) 1147, 1246
Cfr13I GGNCC 2 cut(s) 969, 1347
Cfr9I CCCGGG 2 cut(s) 848, 1027
CseI GACGC 4 cut(s) 625, 800, 1005, 1340
CsiI ACCWGGT 1 cut(s) 932
CspAI ACCGGT 1 cut(s) 1246
CviAII CATG 4 cut(s) 106, 394, 577, 1264
DdeI CTNAG 2 cut(s) 100, 828
DpnI GATC 6 cut(s) 231, 249, 743, 750, 988, 1135
DpnII GATC 6 cut(s) 229, 247, 741, 748, 986, 1133
DriI GACNNNNNGTC 1 cut(s) 344
EaeI YGGCCR 1 cut(s) 256
Eam1105I GACNNNNNGTC 1 cut(s) 344
EciI GGCGGA 2 cut(s) 53, 1146
Ecl136II GAGCTC 2 cut(s) 167, 956
Eco130I CCWWGG 2 cut(s) 81, 581
Eco24I GRGCYC 2 cut(s) 169, 958
Eco31I GGTCTC 1 cut(s) 942
Eco32I GATATC 1 cut(s) 700
Eco53kI GAGCTC 2 cut(s) 167, 956
Eco88I CYCGRG 3 cut(s) 147, 848, 1027
EcoICRI GAGCTC 2 cut(s) 167, 956
EcoRI GAATTC 2 cut(s) 365, 817
EcoRII CCWGG 1 cut(s) 932
EcoRV GATATC 1 cut(s) 700
EcoT14I CCWWGG 2 cut(s) 81, 581
EcoT38I GRGCYC 2 cut(s) 169, 958
ErhI CCWWGG 2 cut(s) 81, 581
Esp3I CGTCTC 2 cut(s) 608, 1062
FaeI CATG 4 cut(s) 109, 397, 580, 1267
FaqI GGGAC 2 cut(s) 34, 544
FatI CATG 4 cut(s) 105, 393, 576, 1263
FauI CCCGC 2 cut(s) 529, 1070
FauNDI CATATG 1 cut(s) 444
FbaI TGATCA 1 cut(s) 229
FokI GGATG 5 cut(s) 296, 314, 345, 707, 1054
FriOI GRGCYC 2 cut(s) 169, 958
FspBI CTAG 2 cut(s) 96, 1292
GlaI GCGC 1 cut(s) 1208
GsaI CCCAGC 1 cut(s) 117
GsuI CTGGAG 1 cut(s) 1003
HaeII RGCGCY 1 cut(s) 1210
HaeIII GGCC 4 cut(s) 258, 971, 1097, 1348
HgaI GACGC 4 cut(s) 625, 800, 1005, 1340
HhaI GCGC 1 cut(s) 1209
Hin1I GRCGYC 2 cut(s) 617, 1332
Hin1II CATG 4 cut(s) 109, 397, 580, 1267
Hin6I GCGC 1 cut(s) 1207
HinP1I GCGC 1 cut(s) 1207
HinfI GANTC 7 cut(s) 109, 213, 323, 390, 448, 806, 1279
HphI GGTGA 7 cut(s) 84, 185, 224, 239, 421, 727, 932
Hpy166II GTNNAC 3 cut(s) 349, 738, 1020
Hpy188I TCNGA 4 cut(s) 10, 121, 328, 890
Hpy8I GTNNAC 3 cut(s) 349, 738, 1020
Hpy99I CGWCG 1 cut(s) 1334
HpyAV CCTTC 3 cut(s) 274, 901, 1233
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4IV ACGT 3 cut(s) 340, 345, 555
HpyCH4V TGCA 2 cut(s) 712, 926
HpyF10VI GCNNNNNNNGC 5 cut(s) 586, 1045, 1103, 1106, 1340
HpyF3I CTNAG 2 cut(s) 100, 828
HpySE526I ACGT 3 cut(s) 340, 345, 555
Hsp92I GRCGYC 2 cut(s) 617, 1332
Hsp92II CATG 4 cut(s) 109, 397, 580, 1267
HspAI GCGC 1 cut(s) 1207
Kpn2I TCCGGA 2 cut(s) 361, 451
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 6 cut(s) 229, 247, 741, 748, 986, 1133
LmnI GCTCC 6 cut(s) 122, 172, 328, 961, 1053, 1220
Lsp1109I GCAGC 4 cut(s) 248, 806, 1159, 1245
LweI GCATC 2 cut(s) 367, 913
MabI ACCWGGT 1 cut(s) 932
MaeI CTAG 2 cut(s) 96, 1292
MaeII ACGT 3 cut(s) 340, 345, 555
MaeIII GTNAC 4 cut(s) 341, 715, 897, 1276
MalI GATC 6 cut(s) 231, 249, 743, 750, 988, 1135
MbiI CCGCTC 1 cut(s) 762
MboI GATC 6 cut(s) 229, 247, 741, 748, 986, 1133
MboII GAAGA 6 cut(s) 262, 424, 506, 553, 609, 800
MflI RGATCY 2 cut(s) 986, 1133
MhlI GDGCHC 3 cut(s) 169, 309, 958
MluCI AATT 7 cut(s) 295, 365, 371, 644, 817, 857, 1033
MlyI GAGTC 5 cut(s) 103, 399, 457, 815, 1273
MmeI TCCRAC 3 cut(s) 144, 316, 983
MroI TCCGGA 2 cut(s) 361, 451
MroXI GAANNNNTTC 1 cut(s) 842
MspA1I CMGCKG 3 cut(s) 261, 827, 1172
MspR9I CCNGG 7 cut(s) 171, 401, 849, 850, 934, 1028, 1029
MvaI CCWGG 1 cut(s) 934
MvnI CGCG 1 cut(s) 1016
MwoI GCNNNNNNNGC 5 cut(s) 586, 1045, 1103, 1106, 1340
NciI CCSGG 6 cut(s) 171, 401, 849, 850, 1028, 1029
NdeI CATATG 1 cut(s) 444
NdeII GATC 6 cut(s) 229, 247, 741, 748, 986, 1133
NlaIII CATG 4 cut(s) 109, 397, 580, 1267
NlaIV GGNNCC 3 cut(s) 970, 1135, 1152
NmeAIII GCCGAG 2 cut(s) 997, 1324
NmuCI GTSAC 3 cut(s) 715, 897, 1276
NspI RCATGY 1 cut(s) 580
PagI TCATGA 1 cut(s) 393
PaqCI CACCTGC 1 cut(s) 703
PdmI GAANNNNTTC 1 cut(s) 842
PfeI GAWTC 2 cut(s) 213, 323
PinAI ACCGGT 1 cut(s) 1246
Ple19I CGATCG 1 cut(s) 744
PleI GAGTC 5 cut(s) 103, 398, 456, 814, 1273
PpsI GAGTC 5 cut(s) 103, 398, 456, 814, 1273
Psp124BI GAGCTC 2 cut(s) 169, 958
Psp6I CCWGG 1 cut(s) 932
PspFI CCCAGC 1 cut(s) 113
PspGI CCWGG 1 cut(s) 932
PspN4I GGNNCC 3 cut(s) 970, 1135, 1152
PspPI GGNCC 2 cut(s) 969, 1347
PsuI RGATCY 2 cut(s) 986, 1133
PvuI CGATCG 1 cut(s) 744
PvuII CAGCTG 1 cut(s) 827
SacI GAGCTC 2 cut(s) 169, 958
Sau3AI GATC 6 cut(s) 229, 247, 741, 748, 986, 1133
Sau96I GGNCC 2 cut(s) 969, 1347
SchI GAGTC 5 cut(s) 103, 399, 457, 815, 1273
ScrFI CCNGG 7 cut(s) 171, 401, 849, 850, 934, 1028, 1029
SduI GDGCHC 3 cut(s) 169, 309, 958
SexAI ACCWGGT 1 cut(s) 932
SfaNI GCATC 2 cut(s) 367, 913
SfcI CTRYAG 1 cut(s) 1210
SmaI CCCGGG 2 cut(s) 850, 1029
SmlI CTYRAG 1 cut(s) 902
SmoI CTYRAG 1 cut(s) 902
Sse9I AATT 7 cut(s) 295, 365, 371, 644, 817, 857, 1033
SspI AATATT 1 cut(s) 999
SspMI CTAG 2 cut(s) 96, 1292
SstI GAGCTC 2 cut(s) 169, 958
StyD4I CCNGG 7 cut(s) 169, 399, 847, 848, 932, 1026, 1027
StyI CCWWGG 2 cut(s) 81, 581
TaaI ACNGT 1 cut(s) 311
TaiI ACGT 3 cut(s) 343, 348, 558
TaqII GACCGA 1 cut(s) 395
TasI AATT 7 cut(s) 295, 365, 371, 644, 817, 857, 1033
TauI GCSGC 8 cut(s) 261, 1016, 1077, 1100, 1103, 1106, 1109, 1239
TfiI GAWTC 2 cut(s) 213, 323
TseFI GTSAC 3 cut(s) 715, 897, 1276
TseI GCWGC 4 cut(s) 261, 794, 1172, 1233
Tsp45I GTSAC 3 cut(s) 715, 897, 1276
TspDTI ATGAA 6 cut(s) 192, 410, 443, 473, 991, 1058
TspMI CCCGGG 2 cut(s) 848, 1027
XapI RAATTY 3 cut(s) 365, 644, 817
XceI RCATGY 1 cut(s) 580
XmaI CCCGGG 2 cut(s) 848, 1027
XmnI GAANNNNTTC 1 cut(s) 842
XspI CTAG 2 cut(s) 96, 1292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.