Prupe.5G214000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0016706
Physical Location & Seq
Forward (+)
16881586 .. 16882693
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G214000.1

Sequence Viewer

Length: 411 bp
ATGGAAACATCATCACAAACTCTGCCTGATCAGCAGCAGCAGCAGCAGCCAGCAGGACAAAGCTTGAGCAGTAATTATCCGCAAGCCGTGCCATTATCTTCTTCTTCTTCTTCTTCTACATCTGGTTCTGGTTCCATTGGGCCATTCTTTGCAGTGATCTCTGTCCTAACGGTGCTTGCGTTTCTGTCGTGCGTTTTGGGGCGGAAGTTGAGTCGTGATCAGACGGTACTGAGGCCATTGGAGAGCATCAACCATGGGCATAGGACTAGCTGTGCAGGGTGGTTGAAGCGCAAGTGCAGGCAGCTGCAGTGCATGGTTTCTCATCATGATCTGGAAGTTGGACCAAATCTAAAGGTGATTGTGGATCCTAAGGTTAAACAAGGTGAAGAGGTTCCTCCACCACAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

14.68

Weight (kDa)

8.82

Isoelectric Point (pI)

65.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016706)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74055
malus_domestica MD14G1219300.v1.1
prunus_persica Prupe.5G214000_v2.0.a1
pyrus_communis pycom06g18650 pycom14g18170
rosa_chinensis RchiOBHm_Chr7g0184281
rosa_laevigata RLG00000004990
rosa_multiflora Rmu_co8406705.1_g000001
rosa_roxburghii Rroxscaffold_3G00269770
rosa_samantha Rh7AG081500 Rh7BG065800 Rh7CG066100 Rh7DG065800
rosa_wichuraiana Rw7G005390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 80, 202
AclWI GGATC 2 cut(s) 359, 372
AfaI GTAC 1 cut(s) 228
AgsI TTSAA 1 cut(s) 286
AluBI AGCT 3 cut(s) 63, 270, 304
AluI AGCT 3 cut(s) 63, 270, 304
AlwI GGATC 2 cut(s) 359, 372
AoxI GGCC 2 cut(s) 140, 233
ApeKI GCWGC 7 cut(s) 34, 37, 40, 43, 46, 301, 304
Asp700I GAANNNNTTC 1 cut(s) 390
AspLEI GCGC 1 cut(s) 291
AspS9I GGNCC 2 cut(s) 140, 341
AsuHPI GGTGA 2 cut(s) 367, 395
AvaII GGWCC 1 cut(s) 341
AxyI CCTNAGG 1 cut(s) 369
BamHI GGATCC 1 cut(s) 364
BbvI GCAGC 7 cut(s) 46, 49, 52, 55, 58, 291, 313
BceAI ACGGC 1 cut(s) 71
BclI TGATCA 2 cut(s) 28, 217
BfaI CTAG 1 cut(s) 267
BfmI CTRYAG 1 cut(s) 305
BisI GCNGC 7 cut(s) 35, 38, 41, 44, 47, 302, 305
BlsI GCNGC 7 cut(s) 36, 39, 42, 45, 48, 303, 306
Bme18I GGWCC 1 cut(s) 341
BmgT120I GGNCC 2 cut(s) 140, 341
BmiI GGNNCC 3 cut(s) 133, 366, 393
BmsI GCATC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 253
Bse21I CCTNAGG 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 221
BseXI GCAGC 7 cut(s) 46, 49, 52, 55, 58, 291, 313
BsgI GTGCAG 2 cut(s) 294, 316
BshFI GGCC 2 cut(s) 142, 235
BsnI GGCC 2 cut(s) 142, 235
Bsp143I GATC 5 cut(s) 28, 156, 217, 328, 364
Bsp19I CCATGG 1 cut(s) 253
BspACI CCGC 2 cut(s) 80, 202
BspANI GGCC 2 cut(s) 142, 235
BspCNI CTCAG 1 cut(s) 222
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 3 cut(s) 133, 366, 393
BspMAI CTGCAG 1 cut(s) 309
BspPI GGATC 2 cut(s) 359, 372
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 5 cut(s) 28, 156, 217, 328, 364
BssT1I CCWWGG 1 cut(s) 253
Bst4CI ACNGT 2 cut(s) 172, 226
Bst6I CTCTTC 1 cut(s) 381
BstAPI GCANNNNNTGC 1 cut(s) 88
BstC8I GCNNGC 4 cut(s) 51, 84, 177, 299
BstDEI CTNAG 2 cut(s) 230, 369
BstDSI CCRYGG 1 cut(s) 253
BstHHI GCGC 1 cut(s) 291
BstKTI GATC 5 cut(s) 31, 159, 220, 331, 367
BstMBI GATC 5 cut(s) 28, 156, 217, 328, 364
BstMWI GCNNNNNNNGC 5 cut(s) 31, 40, 43, 46, 88
BstSFI CTRYAG 1 cut(s) 305
BstV1I GCAGC 7 cut(s) 46, 49, 52, 55, 58, 291, 313
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
Bsu36I CCTNAGG 1 cut(s) 369
BsuRI GGCC 2 cut(s) 142, 235
BtgI CCRYGG 1 cut(s) 253
BtsI GCAGTG 2 cut(s) 159, 314
BtsIMutI CAGTG 2 cut(s) 159, 314
Cac8I GCNNGC 4 cut(s) 51, 84, 177, 299
CciI TCATGA 1 cut(s) 325
CfoI GCGC 1 cut(s) 291
Cfr13I GGNCC 2 cut(s) 140, 341
Csp6I GTAC 1 cut(s) 227
CviAII CATG 3 cut(s) 254, 313, 326
CviJI RGCY 8 cut(s) 49, 63, 86, 142, 235, 270, 304, 406
CviKI_1 RGCY 8 cut(s) 49, 63, 86, 142, 235, 270, 304, 406
CviQI GTAC 1 cut(s) 227
DdeI CTNAG 2 cut(s) 230, 369
DpnI GATC 5 cut(s) 30, 158, 219, 330, 366
DpnII GATC 5 cut(s) 28, 156, 217, 328, 364
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
EciI GGCGGA 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 341
Eco81I CCTNAGG 1 cut(s) 369
EcoT14I CCWWGG 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 3 cut(s) 257, 316, 329
FaiI YATR 4 cut(s) 255, 261, 314, 327
FatI CATG 3 cut(s) 253, 312, 325
FbaI TGATCA 2 cut(s) 28, 217
Fnu4HI GCNGC 7 cut(s) 35, 38, 41, 44, 47, 302, 305
Fsp4HI GCNGC 7 cut(s) 35, 38, 41, 44, 47, 302, 305
FspBI CTAG 1 cut(s) 267
GlaI GCGC 1 cut(s) 290
GluI GCNGC 7 cut(s) 35, 38, 41, 44, 47, 302, 305
HaeIII GGCC 2 cut(s) 142, 235
HhaI GCGC 1 cut(s) 291
Hin1II CATG 3 cut(s) 257, 316, 329
Hin6I GCGC 1 cut(s) 289
HinP1I GCGC 1 cut(s) 289
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 1 cut(s) 211
HphI GGTGA 2 cut(s) 367, 395
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 3 cut(s) 215, 326, 332
HpyCH4III ACNGT 2 cut(s) 172, 226
HpyCH4V TGCA 5 cut(s) 152, 275, 297, 307, 312
HpyF10VI GCNNNNNNNGC 5 cut(s) 31, 40, 43, 46, 88
HpyF3I CTNAG 2 cut(s) 230, 369
Hsp92II CATG 3 cut(s) 257, 316, 329
HspAI GCGC 1 cut(s) 289
Ksp22I TGATCA 2 cut(s) 28, 217
Kzo9I GATC 5 cut(s) 28, 156, 217, 328, 364
LpnPI CCDG 8 cut(s) 39, 39, 63, 108, 114, 261, 283, 317
Lsp1109I GCAGC 7 cut(s) 46, 49, 52, 55, 58, 291, 313
LweI GCATC 1 cut(s) 255
MaeI CTAG 1 cut(s) 267
MalI GATC 5 cut(s) 30, 158, 219, 330, 366
MboI GATC 5 cut(s) 28, 156, 217, 328, 364
MboII GAAGA 7 cut(s) 90, 93, 96, 99, 102, 105, 398
MflI RGATCY 1 cut(s) 364
MluCI AATT 1 cut(s) 73
MlyI GAGTC 1 cut(s) 220
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 3 cut(s) 225, 382, 405
MroXI GAANNNNTTC 1 cut(s) 390
MseI TTAA 1 cut(s) 375
MspA1I CMGCKG 1 cut(s) 304
MwoI GCNNNNNNNGC 5 cut(s) 31, 40, 43, 46, 88
NcoI CCATGG 1 cut(s) 253
NdeII GATC 5 cut(s) 28, 156, 217, 328, 364
NlaIII CATG 3 cut(s) 257, 316, 329
NlaIV GGNNCC 3 cut(s) 133, 366, 393
PagI TCATGA 1 cut(s) 325
PcsI WCGNNNNNNNCGW 1 cut(s) 176
PdmI GAANNNNTTC 1 cut(s) 390
PkrI GCNGC 7 cut(s) 36, 39, 42, 45, 48, 303, 306
PleI GAGTC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 219
PspN4I GGNNCC 3 cut(s) 133, 366, 393
PspPI GGNCC 2 cut(s) 140, 341
PstI CTGCAG 1 cut(s) 309
PsuI RGATCY 1 cut(s) 364
PvuII CAGCTG 1 cut(s) 304
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 7 cut(s) 35, 38, 41, 44, 47, 302, 305
Sau3AI GATC 5 cut(s) 28, 156, 217, 328, 364
Sau96I GGNCC 2 cut(s) 140, 341
SchI GAGTC 1 cut(s) 220
SetI ASST 7 cut(s) 65, 272, 306, 357, 375, 385, 393
SfaNI GCATC 1 cut(s) 255
SfcI CTRYAG 1 cut(s) 305
SinI GGWCC 1 cut(s) 341
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
Sse9I AATT 1 cut(s) 73
SsiI CCGC 2 cut(s) 80, 202
SspMI CTAG 1 cut(s) 267
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 2 cut(s) 172, 226
TasI AATT 1 cut(s) 73
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 2 cut(s) 159, 314
TseI GCWGC 7 cut(s) 34, 37, 40, 43, 46, 301, 304
TspRI CASTG 2 cut(s) 159, 314
VpaK11BI GGWCC 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.