pycom14g18170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0016706
Physical Location & Seq
Forward (+)
19904931 .. 19905389
459 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g18170.1

Sequence Viewer

Length: 459 bp
ATGCAACTTGAATTATCTGCTTCTAAAATTTCTATAGCCATGGAAACAACATCACAAACACTGCCTGGTTCAGCAGGCGATCAAATCTTGGGTGGTGGTGGTAGCAGTAATAATATTCCCCAAGCAGTACCCTCAGTTTCTTCTTCTTCTTCGTCTTCGGGTTCCATTGGGCCATTCTTTGCAGTGATCTCCGTCCTAACGATCCTCGCAGTTCTCTCGTGCTTTTTGGGCCGGAGGCTGACTCGTGATCAGATGGTACCGACTCCGGTGGAGAGCATCAGGGAGAGAATCGATTGTTTCGGGTGGTTGAAGCGCAAGTGCCGGCAGCTGCAGTGCATGGTTGCTCATCATGACCTCGAAGTTGGATCAAAGGTGATGGTCATGGATCTGGGTCAAGAAAAGAAAGGTGATGCTAGGGTTAAAGAAGGTGACCATGAAGTTCCTCCCCAGAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

16.24

Weight (kDa)

7.7

Isoelectric Point (pI)

53.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016706)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74055
malus_domestica MD14G1219300.v1.1
prunus_persica Prupe.5G214000_v2.0.a1
pyrus_communis pycom06g18650 pycom14g18170
rosa_chinensis RchiOBHm_Chr7g0184281
rosa_laevigata RLG00000004990
rosa_multiflora Rmu_co8406705.1_g000001
rosa_roxburghii Rroxscaffold_3G00269770
rosa_samantha Rh7AG081500 Rh7BG065800 Rh7CG066100 Rh7DG065800
rosa_wichuraiana Rw7G005390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 256
AccB1I GGYRCC 1 cut(s) 256
AclWI GGATC 3 cut(s) 196, 373, 393
AcsI RAATTY 1 cut(s) 27
AfaI GTAC 2 cut(s) 129, 258
AgsI TTSAA 2 cut(s) 11, 310
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 1 cut(s) 328
AluI AGCT 1 cut(s) 328
AlwI GGATC 3 cut(s) 196, 373, 393
AoxI GGCC 2 cut(s) 170, 229
ApeKI GCWGC 2 cut(s) 325, 328
ApoI RAATTY 1 cut(s) 27
Asp718I GGTACC 1 cut(s) 256
AspLEI GCGC 1 cut(s) 315
AspS9I GGNCC 2 cut(s) 170, 229
AsuHPI GGTGA 3 cut(s) 385, 419, 440
BanI GGYRCC 1 cut(s) 256
BauI CACGAG 2 cut(s) 217, 243
BbsI GAAGAC 1 cut(s) 147
BbvI GCAGC 2 cut(s) 315, 337
BccI CCATC 2 cut(s) 247, 370
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BciT130I CCWGG 1 cut(s) 66
BclI TGATCA 1 cut(s) 247
BfaI CTAG 1 cut(s) 414
BfmI CTRYAG 2 cut(s) 33, 329
BisI GCNGC 2 cut(s) 326, 329
BlsI GCNGC 2 cut(s) 327, 330
Bme1390I CCNGG 1 cut(s) 66
BmgT120I GGNCC 2 cut(s) 170, 229
BmiI GGNNCC 2 cut(s) 163, 258
BmrFI CCNGG 1 cut(s) 66
BmsI GCATC 2 cut(s) 285, 400
BpiI GAAGAC 1 cut(s) 147
BplI GAGNNNNNCTC 2 cut(s) 226, 258
Bsa29I ATCGAT 1 cut(s) 291
BsaJI CCNNGG 1 cut(s) 39
BsaWI WCCGGW 1 cut(s) 265
Bse118I RCCGGY 1 cut(s) 321
BseBI CCWGG 1 cut(s) 66
BseCI ATCGAT 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 147
BseXI GCAGC 2 cut(s) 315, 337
BshFI GGCC 2 cut(s) 172, 231
BshNI GGYRCC 1 cut(s) 256
BshVI ATCGAT 1 cut(s) 291
BsiSI CCGG 3 cut(s) 232, 266, 322
BsnI GGCC 2 cut(s) 172, 231
Bsp143I GATC 6 cut(s) 79, 186, 201, 247, 365, 385
Bsp19I CCATGG 1 cut(s) 39
BspANI GGCC 2 cut(s) 172, 231
BspCNI CTCAG 1 cut(s) 146
BspDI ATCGAT 1 cut(s) 291
BspHI TCATGA 1 cut(s) 349
BspLI GGNNCC 2 cut(s) 163, 258
BspMAI CTGCAG 1 cut(s) 333
BspPI GGATC 3 cut(s) 196, 373, 393
BspT107I GGYRCC 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 321
BssAI RCCGGY 1 cut(s) 321
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 6 cut(s) 79, 186, 201, 247, 365, 385
BssSI CACGAG 2 cut(s) 217, 243
BssT1I CCWWGG 1 cut(s) 39
Bst2BI CACGAG 2 cut(s) 217, 243
Bst2UI CCWGG 1 cut(s) 66
BstC8I GCNNGC 2 cut(s) 76, 323
BstDEI CTNAG 1 cut(s) 133
BstDSI CCRYGG 1 cut(s) 39
BstEII GGTNACC 1 cut(s) 428
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 6 cut(s) 82, 189, 204, 250, 368, 388
BstMBI GATC 6 cut(s) 79, 186, 201, 247, 365, 385
BstMWI GCNNNNNNNGC 1 cut(s) 228
BstNI CCWGG 1 cut(s) 66
BstPI GGTNACC 1 cut(s) 428
BstSCI CCNGG 1 cut(s) 64
BstSFI CTRYAG 2 cut(s) 33, 329
BstV1I GCAGC 2 cut(s) 315, 337
BstV2I GAAGAC 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
Bsu15I ATCGAT 1 cut(s) 291
BsuRI GGCC 2 cut(s) 172, 231
BsuTUI ATCGAT 1 cut(s) 291
BtgI CCRYGG 1 cut(s) 39
BtsI GCAGTG 3 cut(s) 59, 189, 338
BtsIMutI CAGTG 3 cut(s) 59, 189, 338
Cac8I GCNNGC 2 cut(s) 76, 323
CciI TCATGA 1 cut(s) 349
CfoI GCGC 1 cut(s) 315
Cfr10I RCCGGY 1 cut(s) 321
Cfr13I GGNCC 2 cut(s) 170, 229
ClaI ATCGAT 1 cut(s) 291
Csp6I GTAC 2 cut(s) 128, 257
CviAII CATG 5 cut(s) 40, 337, 350, 382, 434
CviJI RGCY 6 cut(s) 38, 172, 231, 238, 328, 455
CviKI_1 RGCY 6 cut(s) 38, 172, 231, 238, 328, 455
CviQI GTAC 2 cut(s) 128, 257
DdeI CTNAG 1 cut(s) 133
DpnI GATC 6 cut(s) 81, 188, 203, 249, 367, 387
DpnII GATC 6 cut(s) 79, 186, 201, 247, 365, 385
Eco130I CCWWGG 1 cut(s) 39
Eco91I GGTNACC 1 cut(s) 428
EcoO65I GGTNACC 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 5 cut(s) 43, 340, 353, 385, 437
FaiI YATR 6 cut(s) 35, 41, 338, 351, 383, 435
FatI CATG 5 cut(s) 39, 336, 349, 381, 433
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 326, 329
Fsp4HI GCNGC 2 cut(s) 326, 329
FspBI CTAG 1 cut(s) 414
GlaI GCGC 1 cut(s) 314
GluI GCNGC 2 cut(s) 326, 329
HaeIII GGCC 2 cut(s) 172, 231
HapII CCGG 3 cut(s) 232, 266, 322
HhaI GCGC 1 cut(s) 315
Hin1II CATG 5 cut(s) 43, 340, 353, 385, 437
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HinfI GANTC 3 cut(s) 241, 262, 288
HpaII CCGG 3 cut(s) 232, 266, 322
HphI GGTGA 3 cut(s) 385, 419, 440
Hpy188I TCNGA 1 cut(s) 252
Hpy188III TCNNGA 3 cut(s) 245, 350, 395
HpyAV CCTTC 2 cut(s) 419, 445
HpyCH4V TGCA 4 cut(s) 4, 182, 331, 336
HpyF10VI GCNNNNNNNGC 1 cut(s) 228
HpyF3I CTNAG 1 cut(s) 133
Hsp92II CATG 5 cut(s) 43, 340, 353, 385, 437
HspAI GCGC 1 cut(s) 313
KpnI GGTACC 1 cut(s) 260
KroI GCCGGC 1 cut(s) 321
KroNI GCCGGC 1 cut(s) 323
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 6 cut(s) 79, 186, 201, 247, 365, 385
LpnPI CCDG 8 cut(s) 51, 60, 78, 245, 265, 279, 335, 374
Lsp1109I GCAGC 2 cut(s) 315, 337
LweI GCATC 2 cut(s) 285, 400
MaeI CTAG 1 cut(s) 414
MaeIII GTNAC 1 cut(s) 428
MalI GATC 6 cut(s) 81, 188, 203, 249, 367, 387
MboI GATC 6 cut(s) 79, 186, 201, 247, 365, 385
MboII GAAGA 5 cut(s) 132, 135, 138, 141, 147
MflI RGATCY 1 cut(s) 385
MluCI AATT 2 cut(s) 11, 27
MlyI GAGTC 2 cut(s) 235, 256
MmeI TCCRAC 1 cut(s) 343
MnlI CCTC 5 cut(s) 142, 215, 228, 365, 453
MroNI GCCGGC 1 cut(s) 321
MseI TTAA 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 328
MspI CCGG 3 cut(s) 232, 266, 322
MspR9I CCNGG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 66
MwoI GCNNNNNNNGC 1 cut(s) 228
NaeI GCCGGC 1 cut(s) 323
NcoI CCATGG 1 cut(s) 39
NdeII GATC 6 cut(s) 79, 186, 201, 247, 365, 385
NgoMIV GCCGGC 1 cut(s) 321
NlaIII CATG 5 cut(s) 43, 340, 353, 385, 437
NlaIV GGNNCC 2 cut(s) 163, 258
NmuCI GTSAC 1 cut(s) 428
PagI TCATGA 1 cut(s) 349
PdiI GCCGGC 1 cut(s) 323
PfeI GAWTC 1 cut(s) 288
PkrI GCNGC 2 cut(s) 327, 330
PleI GAGTC 2 cut(s) 235, 256
PpsI GAGTC 2 cut(s) 235, 256
Psp6I CCWGG 1 cut(s) 64
PspEI GGTNACC 1 cut(s) 428
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 163, 258
PspPI GGNCC 2 cut(s) 170, 229
PstI CTGCAG 1 cut(s) 333
PsuI RGATCY 1 cut(s) 385
PvuII CAGCTG 1 cut(s) 328
RsaI GTAC 2 cut(s) 129, 258
RsaNI GTAC 2 cut(s) 128, 257
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 2 cut(s) 326, 329
Sau3AI GATC 6 cut(s) 79, 186, 201, 247, 365, 385
Sau96I GGNCC 2 cut(s) 170, 229
SchI GAGTC 2 cut(s) 235, 256
ScrFI CCNGG 1 cut(s) 66
SetI ASST 5 cut(s) 330, 357, 375, 409, 430
SfaNI GCATC 2 cut(s) 285, 400
SfcI CTRYAG 2 cut(s) 33, 329
Sse9I AATT 2 cut(s) 11, 27
SspI AATATT 1 cut(s) 115
SspMI CTAG 1 cut(s) 414
StyD4I CCNGG 1 cut(s) 64
StyI CCWWGG 1 cut(s) 39
TaqI TCGA 2 cut(s) 291, 357
TasI AATT 2 cut(s) 11, 27
TfiI GAWTC 1 cut(s) 288
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 3 cut(s) 66, 189, 338
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 2 cut(s) 325, 328
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 1 cut(s) 450
TspGWI ACGGA 1 cut(s) 181
TspRI CASTG 3 cut(s) 66, 189, 338
XapI RAATTY 1 cut(s) 27
XspI CTAG 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.