Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003480

Physical Location & Seq

Genomic Coordinates Reverse (-)

18410249 .. 18420903

Gene Structure 10655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G246200.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGTAGTGAGCATTGCGCCTTATTGCTTGAGTTTTTCTCAACAAACCTGTAATTCAAACTACATTTCAAAGCATATAGCATTAAGTAAATATAGAAGAGACATACGGAGGGGTTGCCTTAGAAGGCCTCAGATTTTGCCTTCTACTCTTGGAGATGCTGTTGGGTTACGTGTGTTTGTGCTTTCCGACTTGCACACTGACTATACCGAGAACATGGAATGGGTCAAGTGCTTACCAACTGTCAGATACAAGAATGATGTTCTTATTGTTGCGGGTGATGTTGCTGAGACGTACAAGAACTTTATCGTGACAATGTCTCTCTTGAAGGACAGATTTGAGCATGTCTTGTATGTGCCTGGCAACCATGACCTTTGGTGCCGTCACGAGGGAGAAATTTATCTTGATTCCCATCAGAAATTAAAGAAATTGCTTGACACGTGTAGAGGACTTGGAGTTCAGACCAGTCCAATGGTTTTAGATGGCTTAGGAATCATTCCTTTGTTCTCATGGTACCATGAGAGCTTTGATAGGGAGGAGGAAATAACCAGCATCCACGTTTTGCCTTTGGAGATGGCATGTAAGGACTTCAAGGCATGCAAGTGGTCCAAGGAACTGTCAAATGGAGATATCTCACTTGCCCTGTACTTTGATGCAATGAATGAAAAGAATCAGAGTGTGATCAAGGAGATCCAGAACACATGTAACCAAATAATTACATTTTCTCATTTTGTTCCCAGGCAAGAGCTGTGCCCAGAGAAAAGGATGCTATTCTATCCAAAGCTTCCAAAGATTATCGGTTCTGATTGTCTTGAGTTCCGTATAAGGTCTATCCATGGGGTTGAAGGAAGTCCATCTGCATGTCATGTGTTTGGTCATACTCATTTCTGCTGGGATTCTGTGCTTCATGGTATCAGCCTGAAGGTGCCCAATAATATGAGCGGTTACTCTCAAGTCAATGATGAACAATGCAGGTATGTGCAGGCTCCATTGGCTTACCCAAGAGAACGGAAGAGGAGAATGAATGGGGGTGACAAGTGGTTGCCATTTTGTATCTATAGCCACGGAAAGTTTTCTGATAGACTTTCACCGTGTTATTGGTCTGATTATTACTCTACCAACCCACGAACACCTCATAACACTCAACTTGCTCCTTGGGTTGCCAGATTTTATAACCAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

394

Amino Acids

45.5

Weight (kDa)

8.39

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003480)

Species	Orthologous Gene IDs
malus_domestica	MD06G1241600.v1.1
prunus_persica	Prupe.5G246200_v2.0.a1 Prupe.5G246200_v2.0.a1 Prupe.5G246200_v2.0.a1 Prupe.5G246200_v2.0.a1 Prupe.5G246200_v2.0.a1 Prupe.5G246200_v2.0.a1 Prupe.5G246200_v2.0.a1 Prupe.5G246200_v2.0.a1 Prupe.5G246200_v2.0.a1 Prupe.5G246200_v2.0.a1 Prupe.5G246200_v2.0.a1 Prupe.5G246200_v2.0.a1 Prupe.5G246200_v2.0.a1 Prupe.5G246200_v2.0.a1 Prupe.5G246200_v2.0.a1 Prupe.5G246200_v2.0.a1 Prupe.5G246200_v2.0.a1 Prupe.5G246200_v2.0.a1 Prupe.5G246200_v2.0.a1 Prupe.5G246200_v2.0.a1
pyrus_communis	pycom06g21670 pycom06g21680
rosa_chinensis	RchiOBHm_Chr7g0176861
rosa_laevigata	RLG00000005578 RLG00000012575
rosa_multiflora	Rmu_sc0002436.1_g000001 Rmu_sc0005162.1_g000012 Rmu_sc0011812.1_g000003
rosa_roxburghii	Rroxscaffold_3G00276330
rosa_samantha	Rh6BG195100 Rh7AG000600 Rh7BG001000 Rh7CG000600 Rh7DG000800
rosa_wichuraiana	Rw7G000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1170
Acc36I	ACCTGC	1 cut(s)	960
Acc65I	GGTACC	1 cut(s)	510
AccB1I	GGYRCC	3 cut(s)	375, 510, 922
AccBSI	CCGCTC	1 cut(s)	939
AciI	CCGC	2 cut(s)	272, 939
AclWI	GGATC	1 cut(s)	682
AcsI	RAATTY	1 cut(s)	393
AcuI	CTGAAG	1 cut(s)	938
AcvI	CACGTG	1 cut(s)	438
AfaI	GTAC	3 cut(s)	293, 512, 644
AfiI	CCNNNNNNNGG	1 cut(s)	385
AflIII	ACRYGT	4 cut(s)	169, 435, 437, 698
AgsI	TTSAA	5 cut(s)	57, 69, 325, 589, 842
AjnI	CCWGG	2 cut(s)	355, 734
AloI	GAACNNNNNNTCC	2 cut(s)	438, 470
AluBI	AGCT	3 cut(s)	522, 745, 781
AluI	AGCT	3 cut(s)	522, 745, 781
Alw26I	GTCTC	3 cut(s)	93, 281, 321
AlwI	GGATC	1 cut(s)	682
AoxI	GGCC	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	393
Asp700I	GAANNNNTTC	1 cut(s)	1069
Asp718I	GGTACC	1 cut(s)	510
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	603
AsuHPI	GGTGA	3 cut(s)	287, 1040, 1077
AvaII	GGWCC	1 cut(s)	603
BaeGI	GKGCMC	2 cut(s)	752, 927
BanI	GGYRCC	3 cut(s)	375, 510, 922
BauI	CACGAG	1 cut(s)	383
BbrPI	CACGTG	1 cut(s)	438
BccI	CCATC	4 cut(s)	417, 473, 565, 859
BceAI	ACGGC	1 cut(s)	363
BciT130I	CCWGG	2 cut(s)	357, 736
BclI	TGATCA	1 cut(s)	678
BcoDI	GTCTC	3 cut(s)	93, 281, 321
BfmI	CTRYAG	1 cut(s)	1054
BfuAI	ACCTGC	1 cut(s)	960
Bme1390I	CCNGG	2 cut(s)	357, 736
Bme18I	GGWCC	1 cut(s)	603
BmgT120I	GGNCC	1 cut(s)	603
BmiI	GGNNCC	4 cut(s)	377, 512, 924, 984
BmrFI	CCNGG	2 cut(s)	357, 736
BmsI	GCATC	4 cut(s)	145, 558, 640, 753
BplI	GAGNNNNNCTC	2 cut(s)	22, 54
Bpu10I	CCTNAGC	1 cut(s)	484
BpuEI	CTTGAG	3 cut(s)	49, 830, 933
BsaAI	YACGTR	2 cut(s)	170, 438
BsaBI	GATNNNNATC	1 cut(s)	408
BsaJI	CCNNGG	5 cut(s)	606, 734, 832, 1060, 1151
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse1I	ACTGG	1 cut(s)	462
Bse3DI	GCAATG	2 cut(s)	12, 660
Bse8I	GATNNNNATC	1 cut(s)	408
BseBI	CCWGG	2 cut(s)	357, 736
BseDI	CCNNGG	5 cut(s)	606, 734, 832, 1060, 1151
BseGI	GGATG	2 cut(s)	549, 768
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMI	GCAATG	2 cut(s)	12, 660
BseMII	CTCAG	2 cut(s)	143, 276
BseNI	ACTGG	1 cut(s)	462
BseRI	GAGGAG	2 cut(s)	548, 1027
BseSI	GKGCMC	2 cut(s)	752, 927
BseYI	CCCAGC	1 cut(s)	888
BsgI	GTGCAG	1 cut(s)	998
BshFI	GGCC	1 cut(s)	127
BshNI	GGYRCC	3 cut(s)	375, 510, 922
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmAI	GTCTC	3 cut(s)	93, 281, 321
BsmBI	CGTCTC	1 cut(s)	281
BsnI	GGCC	1 cut(s)	127
Bsp1286I	GDGCHC	2 cut(s)	752, 927
Bsp143I	GATC	2 cut(s)	678, 687
Bsp19I	CCATGG	1 cut(s)	832
BspACI	CCGC	2 cut(s)	272, 939
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	2 cut(s)	142, 277
BspLI	GGNNCC	4 cut(s)	377, 512, 924, 984
BspMI	ACCTGC	1 cut(s)	960
BspPI	GGATC	1 cut(s)	682
BspT107I	GGYRCC	3 cut(s)	375, 510, 922
BsrBI	CCGCTC	1 cut(s)	939
BsrDI	GCAATG	2 cut(s)	12, 660
BsrI	ACTGG	1 cut(s)	462
BssECI	CCNNGG	5 cut(s)	606, 734, 832, 1060, 1151
BssMI	GATC	2 cut(s)	678, 687
BssSI	CACGAG	1 cut(s)	383
BssT1I	CCWWGG	3 cut(s)	606, 832, 1151
Bst2BI	CACGAG	1 cut(s)	383
Bst2UI	CCWGG	2 cut(s)	357, 736
Bst4CI	ACNGT	3 cut(s)	241, 615, 1089
Bst6I	CTCTTC	2 cut(s)	91, 1004
BstBAI	YACGTR	2 cut(s)	170, 438
BstC8I	GCNNGC	2 cut(s)	595, 981
BstDEI	CTNAG	4 cut(s)	119, 129, 285, 484
BstDSI	CCRYGG	2 cut(s)	832, 1060
BstF5I	GGATG	2 cut(s)	549, 768
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	2 cut(s)	681, 690
BstMAI	GTCTC	3 cut(s)	93, 281, 321
BstMBI	GATC	2 cut(s)	678, 687
BstMWI	GCNNNNNNNGC	1 cut(s)	989
BstNI	CCWGG	2 cut(s)	357, 736
BstNSI	RCATGY	5 cut(s)	344, 579, 597, 702, 861
BstSCI	CCNGG	2 cut(s)	355, 734
BstSFI	CTRYAG	1 cut(s)	1054
BstSLI	GKGCMC	2 cut(s)	752, 927
BstX2I	RGATCY	1 cut(s)	687
BstXI	CCANNNNNNTGG	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	687
BsuRI	GGCC	1 cut(s)	127
BtgI	CCRYGG	2 cut(s)	832, 1060
BtsCI	GGATG	2 cut(s)	549, 768
BtsIMutI	CAGTG	1 cut(s)	195
BveI	ACCTGC	1 cut(s)	960
Cac8I	GCNNGC	2 cut(s)	595, 981
CfoI	GCGC	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	603
Csp6I	GTAC	3 cut(s)	292, 511, 643
CviJI	RGCY	9 cut(s)	127, 483, 522, 745, 781, 915, 983, 992, 1059
CviKI_1	RGCY	9 cut(s)	127, 483, 522, 745, 781, 915, 983, 992, 1059
CviQI	GTAC	3 cut(s)	292, 511, 643
DdeI	CTNAG	4 cut(s)	119, 129, 285, 484
DpnI	GATC	2 cut(s)	680, 689
DpnII	GATC	2 cut(s)	678, 687
Eam1104I	CTCTTC	2 cut(s)	91, 1004
EarI	CTCTTC	2 cut(s)	91, 1004
Eco130I	CCWWGG	3 cut(s)	606, 832, 1151
Eco147I	AGGCCT	1 cut(s)	127
Eco32I	GATATC	1 cut(s)	628
Eco47I	GGWCC	1 cut(s)	603
Eco57I	CTGAAG	1 cut(s)	938
Eco72I	CACGTG	1 cut(s)	438
EcoRII	CCWGG	2 cut(s)	355, 734
EcoRV	GATATC	1 cut(s)	628
EcoT14I	CCWWGG	3 cut(s)	606, 832, 1151
ErhI	CCWWGG	3 cut(s)	606, 832, 1151
Esp3I	CGTCTC	1 cut(s)	281
FauI	CCCGC	1 cut(s)	265
FbaI	TGATCA	1 cut(s)	678
FokI	GGATG	2 cut(s)	536, 775
GlaI	GCGC	1 cut(s)	18
GsaI	CCCAGC	1 cut(s)	892
HaeIII	GGCC	1 cut(s)	127
HhaI	GCGC	1 cut(s)	19
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HindIII	AAGCTT	1 cut(s)	779
HinfI	GANTC	4 cut(s)	404, 489, 667, 893
HphI	GGTGA	3 cut(s)	287, 1040, 1077
Hpy188I	TCNGA	9 cut(s)	132, 187, 245, 414, 459, 672, 802, 1075, 1102
Hpy188III	TCNNGA	6 cut(s)	307, 322, 383, 401, 691, 809
HpyAV	CCTTC	5 cut(s)	117, 150, 319, 836, 913
HpyCH4III	ACNGT	3 cut(s)	241, 615, 1089
HpyCH4IV	ACGT	4 cut(s)	169, 290, 437, 555
HpyCH4V	TGCA	6 cut(s)	193, 597, 653, 857, 969, 979
HpyF10VI	GCNNNNNNNGC	1 cut(s)	989
HpyF3I	CTNAG	4 cut(s)	119, 129, 285, 484
HpySE526I	ACGT	4 cut(s)	169, 290, 437, 555
HspAI	GCGC	1 cut(s)	17
KpnI	GGTACC	1 cut(s)	514
Ksp22I	TGATCA	1 cut(s)	678
Kzo9I	GATC	2 cut(s)	678, 687
LmnI	GCTCC	2 cut(s)	988, 1153
LweI	GCATC	4 cut(s)	145, 558, 640, 753
MaeII	ACGT	4 cut(s)	169, 290, 437, 555
MaeIII	GTNAC	6 cut(s)	165, 307, 380, 701, 941, 1028
MalI	GATC	2 cut(s)	680, 689
MbiI	CCGCTC	1 cut(s)	939
MboI	GATC	2 cut(s)	678, 687
MboII	GAAGA	2 cut(s)	108, 1021
MflI	RGATCY	1 cut(s)	687
MhlI	GDGCHC	2 cut(s)	752, 927
MluCI	AATT	5 cut(s)	52, 393, 416, 425, 711
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	8 cut(s)	102, 138, 379, 437, 526, 529, 1005, 1140
MroXI	GAANNNNTTC	1 cut(s)	1069
MseI	TTAA	2 cut(s)	83, 419
MslI	CAYNNNNRTG	2 cut(s)	598, 856
MspR9I	CCNGG	2 cut(s)	357, 736
MvaI	CCWGG	2 cut(s)	357, 736
MwoI	GCNNNNNNNGC	1 cut(s)	989
NcoI	CCATGG	1 cut(s)	832
NdeII	GATC	2 cut(s)	678, 687
NlaIV	GGNNCC	4 cut(s)	377, 512, 924, 984
NmuCI	GTSAC	3 cut(s)	307, 380, 1028
NspI	RCATGY	5 cut(s)	344, 579, 597, 702, 861
PaeI	GCATGC	1 cut(s)	597
PceI	AGGCCT	1 cut(s)	127
PciI	ACATGT	1 cut(s)	698
PdmI	GAANNNNTTC	1 cut(s)	1069
PfeI	GAWTC	4 cut(s)	404, 489, 667, 893
PflFI	GACNNNGTC	1 cut(s)	313
PmaCI	CACGTG	1 cut(s)	438
PmlI	CACGTG	1 cut(s)	438
Ppu21I	YACGTR	2 cut(s)	170, 438
PscI	ACATGT	1 cut(s)	698
PsiI	TTATAA	1 cut(s)	1170
Psp6I	CCWGG	2 cut(s)	355, 734
PspCI	CACGTG	1 cut(s)	438
PspFI	CCCAGC	1 cut(s)	888
PspGI	CCWGG	2 cut(s)	355, 734
PspN4I	GGNNCC	4 cut(s)	377, 512, 924, 984
PspPI	GGNCC	1 cut(s)	603
PsuI	RGATCY	1 cut(s)	687
PsyI	GACNNNGTC	1 cut(s)	313
RsaI	GTAC	3 cut(s)	293, 512, 644
RsaNI	GTAC	3 cut(s)	292, 511, 643
RseI	CAYNNNNRTG	2 cut(s)	598, 856
SaqAI	TTAA	2 cut(s)	83, 419
Sau3AI	GATC	2 cut(s)	678, 687
Sau96I	GGNCC	1 cut(s)	603
ScrFI	CCNGG	2 cut(s)	357, 736
SduI	GDGCHC	2 cut(s)	752, 927
SfaNI	GCATC	4 cut(s)	145, 558, 640, 753
SfcI	CTRYAG	1 cut(s)	1054
SinI	GGWCC	1 cut(s)	603
SmiMI	CAYNNNNRTG	2 cut(s)	598, 856
SmlI	CTYRAG	3 cut(s)	28, 809, 948
SmoI	CTYRAG	3 cut(s)	28, 809, 948
SphI	GCATGC	1 cut(s)	597
Sse9I	AATT	5 cut(s)	52, 393, 416, 425, 711
SseBI	AGGCCT	1 cut(s)	127
SsiI	CCGC	2 cut(s)	272, 939
StuI	AGGCCT	1 cut(s)	127
StyD4I	CCNGG	2 cut(s)	355, 734
StyI	CCWWGG	3 cut(s)	606, 832, 1151
TaaI	ACNGT	3 cut(s)	241, 615, 1089
TaiI	ACGT	4 cut(s)	172, 293, 440, 558
TasI	AATT	5 cut(s)	52, 393, 416, 425, 711
TatI	WGTACW	1 cut(s)	642
TfiI	GAWTC	4 cut(s)	404, 489, 667, 893
Tru1I	TTAA	2 cut(s)	83, 419
Tru9I	TTAA	2 cut(s)	83, 419
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	3 cut(s)	307, 380, 1028
Tsp45I	GTSAC	3 cut(s)	307, 380, 1028
TspDTI	ATGAA	5 cut(s)	671, 675, 893, 975, 1034
TspGWI	ACGGA	4 cut(s)	121, 806, 1021, 1077
TspRI	CASTG	1 cut(s)	202
Tth111I	GACNNNGTC	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	603
XapI	RAATTY	1 cut(s)	393
XceI	RCATGY	5 cut(s)	344, 579, 597, 702, 861
XmnI	GAANNNNTTC	1 cut(s)	1069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.