Prupe.6G008800_v2.0.a1

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015583
Physical Location & Seq
Reverse (-)
684388 .. 691799
7412 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G008800.1

Sequence Viewer

Length: 432 bp
ATGTCAATCGTCCCAATCAACGAGCAACGAGGCAGTGACTTCGACCCTTCCTTGGCTCTTGACCTGTGGGACCCATTCACAGATTTCCCTTTCCCATTCCCTTCCTCACTCTCCAACGTTTTCCGGGAATTCAATCTGGGTTCTTCGGTAAACTCAAGACTAGATTGGAGAGAGACCCGACATGCCCACATCCTAAAGGCGGCTCTTCCTGCGTTCATGAACGAGGACGTGCTTGTGGAGCTTCAAGACGAGCGTGTGCTTCAGATCAGTACAGACAGCGGTAGCTTCATGACAAAGTTTAAGCTTCCGGACAACGCCAAGATTGAGCAGCTTAAGGCCTTCATGAGCAATGGGGTTCTCACTGTCACTGTTCCTAAGGAGGAGCCCAGCAGACCCAATATCAGAGCCATTGAAATTTCTGGCGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

144

Amino Acids

16.16

Weight (kDa)

4.73

Isoelectric Point (pI)

67.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015583)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37320
malus_domestica MD03G1081800.v1.1
prunus_persica Prupe.6G008800_v2.0.a1
pyrus_communis pycom03g06520
rosa_chinensis RchiOBHm_Chr5g0067101
rosa_laevigata RLG00000035910 RLG00000035913
rosa_multiflora Rmu_sc0000151.1_g000011
rosa_roxburghii Rroxscaffold_1G00013970
rosa_rugosa Rorug05G0381500 Rorug05G0381800
rosa_samantha Rh5AG441800 Rh5BG458800 Rh5CG481000 Rh5DG473700
rosa_wichuraiana Rw5G041250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 307
AciI CCGC 2 cut(s) 200, 279
AclI AACGTT 1 cut(s) 117
AcsI RAATTY 2 cut(s) 128, 414
AcuI CTGAAG 1 cut(s) 245
AfaI GTAC 1 cut(s) 271
AfiI CCNNNNNNNGG 2 cut(s) 52, 199
AflII CTTAAG 1 cut(s) 332
AgsI TTSAA 3 cut(s) 133, 245, 413
AjiI CACGTC 1 cut(s) 229
AluBI AGCT 4 cut(s) 241, 285, 304, 331
AluI AGCT 4 cut(s) 241, 285, 304, 331
Alw26I GTCTC 1 cut(s) 167
Aor13HI TCCGGA 1 cut(s) 307
AoxI GGCC 1 cut(s) 336
ApeKI GCWGC 1 cut(s) 328
ApoI RAATTY 2 cut(s) 128, 414
AspS9I GGNCC 1 cut(s) 70
AsuC2I CCSGG 1 cut(s) 125
AvaII GGWCC 1 cut(s) 70
AxyI CCTNAGG 1 cut(s) 375
BanII GRGCYC 1 cut(s) 387
BbvI GCAGC 1 cut(s) 340
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BcnI CCSGG 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 1 cut(s) 161
BfrI CTTAAG 1 cut(s) 332
BisI GCNGC 2 cut(s) 201, 329
BlsI GCNGC 2 cut(s) 202, 330
Bme1390I CCNGG 1 cut(s) 125
Bme18I GGWCC 1 cut(s) 70
BmgBI CACGTC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 3 cut(s) 71, 72, 384
BmrFI CCNGG 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 139
BpuMI CCSGG 1 cut(s) 125
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 51
BsaWI WCCGGW 1 cut(s) 307
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 199
Bse21I CCTNAGG 1 cut(s) 375
Bse3DI GCAATG 1 cut(s) 355
BseAI TCCGGA 1 cut(s) 307
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 189
BseLI CCNNNNNNNGG 2 cut(s) 52, 199
BseMI GCAATG 1 cut(s) 355
BseRI GAGGAG 1 cut(s) 395
BseXI GCAGC 1 cut(s) 340
BseYI CCCAGC 1 cut(s) 386
BshFI GGCC 1 cut(s) 338
BsiSI CCGG 2 cut(s) 124, 308
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 2 cut(s) 52, 199
BsmAI GTCTC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 83
BsnI GGCC 1 cut(s) 338
Bso31I GGTCTC 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 387
Bsp13I TCCGGA 1 cut(s) 307
Bsp143I GATC 1 cut(s) 264
BspACI CCGC 2 cut(s) 200, 279
BspANI GGCC 1 cut(s) 338
BspEI TCCGGA 1 cut(s) 307
BspHI TCATGA 3 cut(s) 216, 288, 342
BspLI GGNNCC 3 cut(s) 71, 72, 384
BspQI GCTCTTC 1 cut(s) 210
BspTI CTTAAG 1 cut(s) 332
BspTNI GGTCTC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 355
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 51
Bst4CI ACNGT 2 cut(s) 364, 370
Bst6I CTCTTC 1 cut(s) 210
BstAFI CTTAAG 1 cut(s) 332
BstDEI CTNAG 1 cut(s) 375
BstF5I GGATG 1 cut(s) 189
BstKTI GATC 1 cut(s) 267
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 1 cut(s) 264
BstMWI GCNNNNNNNGC 2 cut(s) 209, 238
BstNSI RCATGY 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 340
Bsu36I CCTNAGG 1 cut(s) 375
BsuRI GGCC 1 cut(s) 338
BtrI CACGTC 1 cut(s) 229
BtsCI GGATG 1 cut(s) 189
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 3 cut(s) 40, 360, 366
CciI TCATGA 3 cut(s) 216, 288, 342
Cfr13I GGNCC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 270
CviAII CATG 4 cut(s) 182, 217, 289, 343
CviJI RGCY 9 cut(s) 56, 203, 241, 285, 304, 331, 338, 385, 407
CviKI_1 RGCY 9 cut(s) 56, 203, 241, 285, 304, 331, 338, 385, 407
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 1 cut(s) 375
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 51
Eco147I AGGCCT 1 cut(s) 338
Eco24I GRGCYC 1 cut(s) 387
Eco31I GGTCTC 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 245
Eco81I CCTNAGG 1 cut(s) 375
EcoO109I RGGNCCY 1 cut(s) 70
EcoRI GAATTC 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 51
EcoT38I GRGCYC 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 4 cut(s) 185, 220, 292, 346
FaiI YATR 4 cut(s) 183, 218, 290, 344
FaqI GGGAC 1 cut(s) 83
FatI CATG 4 cut(s) 181, 216, 288, 342
Fnu4HI GCNGC 2 cut(s) 201, 329
FokI GGATG 1 cut(s) 176
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 2 cut(s) 201, 329
FspBI CTAG 1 cut(s) 161
GluI GCNGC 2 cut(s) 201, 329
GsaI CCCAGC 1 cut(s) 390
HaeIII GGCC 1 cut(s) 338
HapII CCGG 2 cut(s) 124, 308
Hin1II CATG 4 cut(s) 185, 220, 292, 346
HindIII AAGCTT 1 cut(s) 302
HpaII CCGG 2 cut(s) 124, 308
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 2 cut(s) 264, 404
Hpy188III TCNNGA 7 cut(s) 59, 156, 217, 245, 289, 308, 343
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 3 cut(s) 57, 111, 349
HpyCH4III ACNGT 2 cut(s) 364, 370
HpyCH4IV ACGT 2 cut(s) 117, 228
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 238
HpyF3I CTNAG 1 cut(s) 375
HpySE526I ACGT 2 cut(s) 117, 228
Hsp92II CATG 4 cut(s) 185, 220, 292, 346
KflI GGGWCCC 1 cut(s) 70
Kpn2I TCCGGA 1 cut(s) 307
Kzo9I GATC 1 cut(s) 264
LguI GCTCTTC 1 cut(s) 210
LmnI GCTCC 2 cut(s) 238, 382
LpnPI CCDG 7 cut(s) 77, 122, 137, 222, 321, 400, 405
Lsp1109I GCAGC 1 cut(s) 340
MaeI CTAG 1 cut(s) 161
MaeII ACGT 2 cut(s) 117, 228
MaeIII GTNAC 2 cut(s) 35, 364
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MboII GAAGA 2 cut(s) 135, 197
MhlI GDGCHC 1 cut(s) 387
MluCI AATT 2 cut(s) 128, 414
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 4 cut(s) 23, 115, 217, 373
MroI TCCGGA 1 cut(s) 307
MseI TTAA 3 cut(s) 300, 333, 430
MspA1I CMGCKG 1 cut(s) 279
MspCI CTTAAG 1 cut(s) 332
MspI CCGG 2 cut(s) 124, 308
MspR9I CCNGG 1 cut(s) 125
MwoI GCNNNNNNNGC 2 cut(s) 209, 238
NciI CCSGG 1 cut(s) 125
NdeII GATC 1 cut(s) 264
NlaIII CATG 4 cut(s) 185, 220, 292, 346
NlaIV GGNNCC 3 cut(s) 71, 72, 384
NmuCI GTSAC 2 cut(s) 35, 364
NspI RCATGY 1 cut(s) 185
PagI TCATGA 3 cut(s) 216, 288, 342
PceI AGGCCT 1 cut(s) 338
PciSI GCTCTTC 1 cut(s) 210
PfoI TCCNGGA 1 cut(s) 123
PkrI GCNGC 2 cut(s) 202, 330
PpuMI RGGWCCY 1 cut(s) 70
Psp1406I AACGTT 1 cut(s) 117
Psp5II RGGWCCY 1 cut(s) 70
PspFI CCCAGC 1 cut(s) 386
PspN4I GGNNCC 3 cut(s) 71, 72, 384
PspPI GGNCC 1 cut(s) 70
PspPPI RGGWCCY 1 cut(s) 70
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SapI GCTCTTC 1 cut(s) 210
SaqAI TTAA 3 cut(s) 300, 333, 430
SatI GCNGC 2 cut(s) 201, 329
Sau3AI GATC 1 cut(s) 264
Sau96I GGNCC 1 cut(s) 70
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 1 cut(s) 387
SetI ASST 7 cut(s) 66, 120, 231, 243, 287, 306, 333
SinI GGWCC 1 cut(s) 70
SmlI CTYRAG 2 cut(s) 154, 332
SmoI CTYRAG 2 cut(s) 154, 332
Sse9I AATT 2 cut(s) 128, 414
SseBI AGGCCT 1 cut(s) 338
SsiI CCGC 2 cut(s) 200, 279
SspMI CTAG 1 cut(s) 161
StuI AGGCCT 1 cut(s) 338
StyD4I CCNGG 1 cut(s) 123
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 2 cut(s) 364, 370
TaiI ACGT 2 cut(s) 120, 231
TaqI TCGA 1 cut(s) 42
TasI AATT 2 cut(s) 128, 414
TatI WGTACW 1 cut(s) 269
TauI GCSGC 1 cut(s) 203
Tru1I TTAA 3 cut(s) 300, 333, 430
Tru9I TTAA 3 cut(s) 300, 333, 430
TscAI CASTG 3 cut(s) 40, 367, 373
TseFI GTSAC 2 cut(s) 35, 364
TseI GCWGC 1 cut(s) 328
Tsp45I GTSAC 2 cut(s) 35, 364
TspDTI ATGAA 4 cut(s) 205, 233, 277, 331
TspRI CASTG 3 cut(s) 40, 367, 373
Vha464I CTTAAG 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 2 cut(s) 128, 414
XceI RCATGY 1 cut(s) 185
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.