RLG00000035910

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0015583
Physical Location & Seq
Reverse (-)
73280243 .. 73280664
422 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035910

Sequence Viewer

Length: 318 bp
ATGTCAATCATCCCAATCAACGAGCGACGAAGCATGAATTCCAGGCTCGATTGGAGCGAGACCCGAAATGTCCACGTTCTTGAGGCAGCTCTTCCTGTGTTTGCGAACGGAGACACTCTTGTTGAGCTTCAAGAAGAGCGAGTGCTTCAAATTAGCAAAGACAGCGGTAGCTTCATGACCAAGATTAAGCTCCCCGACAACGCCAAGATTGAGGAGCTCAAGGCCTTTATGAGCAATGGGGTTGTTACTGTCACTATTCCTAATGTGGAGGCTGACAGGCCTAATGTCAGAGCCATTGAAATTTCCGACGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

106

Amino Acids

11.8

Weight (kDa)

4.77

Isoelectric Point (pI)

55.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 37 - 102 7.3e-11 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015583)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37320
malus_domestica MD03G1081800.v1.1
prunus_persica Prupe.6G008800_v2.0.a1
pyrus_communis pycom03g06520
rosa_chinensis RchiOBHm_Chr5g0067101
rosa_laevigata RLG00000035910 RLG00000035913
rosa_multiflora Rmu_sc0000151.1_g000011
rosa_roxburghii Rroxscaffold_1G00013970
rosa_rugosa Rorug05G0381500 Rorug05G0381800
rosa_samantha Rh5AG441800 Rh5BG458800 Rh5CG481000 Rh5DG473700
rosa_wichuraiana Rw5G041250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 165
AcsI RAATTY 2 cut(s) 37, 300
AgsI TTSAA 3 cut(s) 131, 149, 299
AjnI CCWGG 1 cut(s) 41
AluBI AGCT 5 cut(s) 89, 127, 171, 190, 217
AluI AGCT 5 cut(s) 89, 127, 171, 190, 217
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 2 cut(s) 53, 105
AoxI GGCC 2 cut(s) 222, 278
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 2 cut(s) 37, 300
BanII GRGCYC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 98
BciT130I CCWGG 1 cut(s) 43
BcoDI GTCTC 2 cut(s) 53, 105
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme1390I CCNGG 1 cut(s) 43
BmrFI CCNGG 1 cut(s) 43
BpuEI CTTGAG 2 cut(s) 101, 203
BsaI GGTCTC 1 cut(s) 53
Bse3DI GCAATG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 9
BseMI GCAATG 1 cut(s) 241
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 98
BshFI GGCC 2 cut(s) 224, 280
BsiHKAI GWGCWC 1 cut(s) 219
BsmAI GTCTC 2 cut(s) 53, 105
BsnI GGCC 2 cut(s) 224, 280
Bso31I GGTCTC 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 219
BspACI CCGC 1 cut(s) 165
BspANI GGCC 2 cut(s) 224, 280
BspHI TCATGA 1 cut(s) 174
BspQI GCTCTTC 2 cut(s) 96, 129
BspTNI GGTCTC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 2 cut(s) 96, 129
BstF5I GGATG 1 cut(s) 9
BstMAI GTCTC 2 cut(s) 53, 105
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNI CCWGG 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 98
BsuRI GGCC 2 cut(s) 224, 280
BtsCI GGATG 1 cut(s) 9
CciI TCATGA 1 cut(s) 174
CviAII CATG 2 cut(s) 34, 175
Eam1104I CTCTTC 2 cut(s) 96, 129
EarI CTCTTC 2 cut(s) 96, 129
Ecl136II GAGCTC 1 cut(s) 217
Eco147I AGGCCT 2 cut(s) 224, 280
Eco24I GRGCYC 1 cut(s) 219
Eco31I GGTCTC 1 cut(s) 53
Eco53kI GAGCTC 1 cut(s) 217
EcoICRI GAGCTC 1 cut(s) 217
EcoRI GAATTC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 41
EcoT38I GRGCYC 1 cut(s) 219
FaeI CATG 2 cut(s) 37, 178
FaiI YATR 3 cut(s) 35, 176, 230
FatI CATG 2 cut(s) 33, 174
Fnu4HI GCNGC 1 cut(s) 87
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 87
GluI GCNGC 1 cut(s) 87
HaeIII GGCC 2 cut(s) 224, 280
Hin1II CATG 2 cut(s) 37, 178
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 2 cut(s) 290, 307
Hpy188III TCNNGA 3 cut(s) 80, 131, 175
Hpy8I GTNNAC 1 cut(s) 73
Hpy99I CGWCG 2 cut(s) 30, 311
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 75
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 2 cut(s) 37, 178
LguI GCTCTTC 2 cut(s) 96, 129
LmnI GCTCC 3 cut(s) 54, 195, 214
LpnPI CCDG 4 cut(s) 28, 55, 108, 262
Lsp1109I GCAGC 1 cut(s) 98
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 2 cut(s) 244, 250
MboII GAAGA 2 cut(s) 83, 146
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 3 cut(s) 37, 150, 300
MnlI CCTC 3 cut(s) 76, 205, 262
MseI TTAA 2 cut(s) 186, 316
MspA1I CMGCKG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 43
MvaI CCWGG 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 162
NlaIII CATG 2 cut(s) 37, 178
NmuCI GTSAC 1 cut(s) 250
PagI TCATGA 1 cut(s) 174
PceI AGGCCT 2 cut(s) 224, 280
PciSI GCTCTTC 2 cut(s) 96, 129
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PkrI GCNGC 1 cut(s) 88
Psp124BI GAGCTC 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 41
SacI GAGCTC 1 cut(s) 219
SapI GCTCTTC 2 cut(s) 96, 129
SaqAI TTAA 2 cut(s) 186, 316
SatI GCNGC 1 cut(s) 87
ScrFI CCNGG 1 cut(s) 43
SduI GDGCHC 1 cut(s) 219
SetI ASST 6 cut(s) 78, 91, 129, 173, 192, 219
SmlI CTYRAG 2 cut(s) 80, 218
SmoI CTYRAG 2 cut(s) 80, 218
Sse9I AATT 3 cut(s) 37, 150, 300
SseBI AGGCCT 2 cut(s) 224, 280
SsiI CCGC 1 cut(s) 165
SstI GAGCTC 1 cut(s) 219
StuI AGGCCT 2 cut(s) 224, 280
StyD4I CCNGG 1 cut(s) 41
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 1 cut(s) 78
TaqI TCGA 1 cut(s) 48
TasI AATT 3 cut(s) 37, 150, 300
Tru1I TTAA 2 cut(s) 186, 316
Tru9I TTAA 2 cut(s) 186, 316
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 2 cut(s) 50, 163
TspGWI ACGGA 1 cut(s) 123
XapI RAATTY 2 cut(s) 37, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.