Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0015583

Physical Location & Seq

Genomic Coordinates Forward (+)

51721640 .. 51722142

Gene Structure 503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0381500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGGCCGGGTCCCTGTCTTTGGGCCTTGTTGTCGTTTGGGTTTAATTAAGGTTTTTTGTTTGGTTTTATTTAGGGTTGTTTGTTTGGTTAGTTTAGGTTTAATAAGTCCCTACTCCTTCGAGCTAGGGTTTGGGAGTCGTGGTCTGCTTGGTGTGCCATTATTGTGGCGTTACTCCGAGGAATTATGGGTTTTAATTTCGGTGCTTTCTGGTTGTCAACATGAGGGTGGATTGCCTTTGCACGTGGTCTGGCGGTACTTGGACACGGTGTTGAAGAGGGTAAATTGGCTCGGTCTAATGTTGGTGGCAAGGTTGTATCGGTACTCTCGGGAAGTAGCTCGTGGTTTCGGGCGTAAAATTTGGTTAGGGGTTGGGCTCATTTGGCTCATGGATGTTGCTATTAGCGACGGACCCATAACTATGGATCTTTGTAGGAATGTGTGTCGTGGTGTAGTACCACAACCGGTCATTCCAATGCGTTGTAATCTTTTCGGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

166

Amino Acids

18.74

Weight (kDa)

9.46

Isoelectric Point (pI)

27.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015583)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37320
malus_domestica	MD03G1081800.v1.1
prunus_persica	Prupe.6G008800_v2.0.a1
pyrus_communis	pycom03g06520
rosa_chinensis	RchiOBHm_Chr5g0067101
rosa_laevigata	RLG00000035910 RLG00000035913
rosa_multiflora	Rmu_sc0000151.1_g000011
rosa_roxburghii	Rroxscaffold_1G00013970
rosa_rugosa	Rorug05G0381500 Rorug05G0381800
rosa_samantha	Rh5AG441800 Rh5BG458800 Rh5CG481000 Rh5DG473700
rosa_wichuraiana	Rw5G041250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	253
AclWI	GGATC	1 cut(s)	432
AcsI	RAATTY	1 cut(s)	357
AcvI	CACGTG	1 cut(s)	244
AfaI	GTAC	3 cut(s)	257, 323, 456
AfiI	CCNNNNNNNGG	1 cut(s)	20
AgeI	ACCGGT	1 cut(s)	463
AgsI	TTSAA	1 cut(s)	274
AluBI	AGCT	2 cut(s)	124, 338
AluI	AGCT	2 cut(s)	124, 338
AlwI	GGATC	1 cut(s)	432
Ama87I	CYCGRG	1 cut(s)	327
AoxI	GGCC	2 cut(s)	4, 23
ApoI	RAATTY	1 cut(s)	357
AsiGI	ACCGGT	1 cut(s)	463
AspS9I	GGNCC	4 cut(s)	4, 10, 23, 410
AsuC2I	CCSGG	1 cut(s)	8
AvaI	CYCGRG	1 cut(s)	327
AvaII	GGWCC	2 cut(s)	10, 410
BanII	GRGCYC	1 cut(s)	378
BauI	CACGAG	1 cut(s)	339
BbrPI	CACGTG	1 cut(s)	244
BcnI	CCSGG	1 cut(s)	8
BfaI	CTAG	1 cut(s)	125
Bme1390I	CCNGG	1 cut(s)	8
Bme18I	GGWCC	2 cut(s)	10, 410
BmeT110I	CYCGRG	1 cut(s)	327
BmgT120I	GGNCC	4 cut(s)	4, 10, 23, 410
BmiI	GGNNCC	3 cut(s)	11, 12, 412
BmrFI	CCNGG	1 cut(s)	8
BpuMI	CCSGG	1 cut(s)	8
BsaAI	YACGTR	1 cut(s)	244
BsaJI	CCNNGG	1 cut(s)	177
BsaWI	WCCGGW	1 cut(s)	463
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse118I	RCCGGY	1 cut(s)	463
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	1 cut(s)	20
BshFI	GGCC	2 cut(s)	6, 25
BshTI	ACCGGT	1 cut(s)	463
BsiHKCI	CYCGRG	1 cut(s)	327
BsiSI	CCGG	2 cut(s)	7, 464
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	93
BsnI	GGCC	2 cut(s)	6, 25
BsoBI	CYCGRG	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	1 cut(s)	424
BspACI	CCGC	1 cut(s)	253
BspANI	GGCC	2 cut(s)	6, 25
BspLI	GGNNCC	3 cut(s)	11, 12, 412
BspPI	GGATC	1 cut(s)	432
BsrFI	RCCGGY	1 cut(s)	463
BssAI	RCCGGY	1 cut(s)	463
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	1 cut(s)	424
BssSI	CACGAG	1 cut(s)	339
Bst2BI	CACGAG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	269
BstBAI	YACGTR	1 cut(s)	244
BstF5I	GGATG	1 cut(s)	397
BstKTI	GATC	1 cut(s)	427
BstMBI	GATC	1 cut(s)	424
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 382
BstSCI	CCNGG	1 cut(s)	6
BstX2I	RGATCY	1 cut(s)	424
BstXI	CCANNNNNNTGG	2 cut(s)	165, 421
BstYI	RGATCY	1 cut(s)	424
BsuRI	GGCC	2 cut(s)	6, 25
BtsCI	GGATG	1 cut(s)	397
Cfr10I	RCCGGY	1 cut(s)	463
Cfr13I	GGNCC	4 cut(s)	4, 10, 23, 410
Csp6I	GTAC	3 cut(s)	256, 322, 455
CspAI	ACCGGT	1 cut(s)	463
CviAII	CATG	2 cut(s)	221, 388
CviJI	RGCY	7 cut(s)	6, 25, 124, 289, 338, 376, 385
CviKI_1	RGCY	7 cut(s)	6, 25, 124, 289, 338, 376, 385
CviQI	GTAC	3 cut(s)	256, 322, 455
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	378
Eco47I	GGWCC	2 cut(s)	10, 410
Eco72I	CACGTG	1 cut(s)	244
Eco88I	CYCGRG	1 cut(s)	327
EcoO109I	RGGNCCY	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	378
FaeI	CATG	2 cut(s)	224, 391
FaiI	YATR	5 cut(s)	187, 222, 389, 416, 422
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	2 cut(s)	220, 387
FokI	GGATG	1 cut(s)	404
FriOI	GRGCYC	1 cut(s)	378
FspBI	CTAG	1 cut(s)	125
HaeIII	GGCC	2 cut(s)	6, 25
HapII	CCGG	2 cut(s)	7, 464
Hin1II	CATG	2 cut(s)	224, 391
HincII	GTYRAC	1 cut(s)	218
HindII	GTYRAC	1 cut(s)	218
HinfI	GANTC	1 cut(s)	136
HpaII	CCGG	2 cut(s)	7, 464
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	1 cut(s)	218
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 382
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	224, 391
KflI	GGGWCCC	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	424
LpnPI	CCDG	5 cut(s)	20, 27, 195, 235, 477
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MboII	GAAGA	1 cut(s)	286
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	5 cut(s)	45, 182, 195, 283, 357
MlyI	GAGTC	1 cut(s)	145
MnlI	CCTC	3 cut(s)	172, 217, 270
MseI	TTAA	5 cut(s)	44, 48, 101, 194, 499
MslI	CAYNNNNRTG	4 cut(s)	163, 225, 419, 473
MspI	CCGG	2 cut(s)	7, 464
MspR9I	CCNGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	154, 382
NciI	CCSGG	1 cut(s)	8
NdeII	GATC	1 cut(s)	424
NlaIII	CATG	2 cut(s)	224, 391
NlaIV	GGNNCC	3 cut(s)	11, 12, 412
PacI	TTAATTAA	1 cut(s)	48
PinAI	ACCGGT	1 cut(s)	463
PleI	GAGTC	1 cut(s)	144
PmaCI	CACGTG	1 cut(s)	244
PmlI	CACGTG	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	144
Ppu21I	YACGTR	1 cut(s)	244
PpuMI	RGGWCCY	1 cut(s)	10
Psp5II	RGGWCCY	1 cut(s)	10
PspCI	CACGTG	1 cut(s)	244
PspN4I	GGNNCC	3 cut(s)	11, 12, 412
PspPI	GGNCC	4 cut(s)	4, 10, 23, 410
PspPPI	RGGWCCY	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	3 cut(s)	257, 323, 456
RsaNI	GTAC	3 cut(s)	256, 322, 455
RseI	CAYNNNNRTG	4 cut(s)	163, 225, 419, 473
SaqAI	TTAA	5 cut(s)	44, 48, 101, 194, 499
Sau3AI	GATC	1 cut(s)	424
Sau96I	GGNCC	4 cut(s)	4, 10, 23, 410
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	1 cut(s)	8
SduI	GDGCHC	1 cut(s)	378
SetI	ASST	6 cut(s)	54, 100, 126, 246, 314, 340
SinI	GGWCC	2 cut(s)	10, 410
SmiMI	CAYNNNNRTG	4 cut(s)	163, 225, 419, 473
Sse9I	AATT	5 cut(s)	45, 182, 195, 283, 357
SsiI	CCGC	1 cut(s)	253
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	120
TaqII	GACCGA	1 cut(s)	281
TasI	AATT	5 cut(s)	45, 182, 195, 283, 357
Tru1I	TTAA	5 cut(s)	44, 48, 101, 194, 499
Tru9I	TTAA	5 cut(s)	44, 48, 101, 194, 499
TspGWI	ACGGA	1 cut(s)	423
VpaK11BI	GGWCC	2 cut(s)	10, 410
XapI	RAATTY	1 cut(s)	357
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.