U-box domain-containing protein 33-like
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g35970 FvH4_3g35970 FvH4_3g35970 FvH4_3g35970 FvH4_3g35970 |
| malus_domestica | MD03G1095200.v1.1 MD11G1110200.v1.1 |
| prunus_persica | Prupe.6G078700_v2.0.a1 Prupe.6G078700_v2.0.a1 |
| pyrus_communis | pycom03g07770 pycom11g09100 |
| rosa_chinensis | RchiOBHm_Chr5g0064331 |
| rosa_laevigata | RLG00000035717 |
| rosa_multiflora | Rmu_sc0000806.1_g000029 |
| rosa_roxburghii | Rroxscaffold_1G00016670 |
| rosa_rugosa | Rorug05G0364100 Rorug05G0364100 |
| rosa_samantha | Rh5AG422200 Rh5BG438100 Rh5CG460600 Rh5DG451000 |
| rosa_wichuraiana | Rw5G039740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1969 |
| Acc16I | TGCGCA | 1 cut(s) | 2051 |
| AccBSI | CCGCTC | 1 cut(s) | 1300 |
| AccI | GTMKAC | 3 cut(s) | 253, 468, 2136 |
| AccII | CGCG | 1 cut(s) | 2358 |
| AciI | CCGC | 5 cut(s) | 101, 153, 659, 1300, 1894 |
| AclWI | GGATC | 2 cut(s) | 1928, 2260 |
| AcoI | YGGCCR | 1 cut(s) | 98 |
| AcsI | RAATTY | 4 cut(s) | 246, 450, 713, 1382 |
| AcuI | CTGAAG | 8 cut(s) | 624, 834, 1226, 1380, 1887, 1928, 2250, 2255 |
| AfaI | GTAC | 6 cut(s) | 168, 516, 805, 1554, 1560, 1903 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 32, 57, 727, 1290, 1713, 2030, 2296 |
| AflIII | ACRYGT | 2 cut(s) | 169, 619 |
| AjiI | CACGTC | 1 cut(s) | 86 |
| AjnI | CCWGG | 1 cut(s) | 1616 |
| Alw21I | GWGCWC | 3 cut(s) | 9, 1171, 1638 |
| Alw26I | GTCTC | 2 cut(s) | 72, 2370 |
| AlwI | GGATC | 2 cut(s) | 1928, 2260 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 857, 1052 |
| Ama87I | CYCGRG | 1 cut(s) | 699 |
| AoxI | GGCC | 4 cut(s) | 98, 646, 2021, 2108 |
| ApeKI | GCWGC | 7 cut(s) | 566, 578, 731, 1328, 1827, 2146, 2300 |
| ApoI | RAATTY | 4 cut(s) | 246, 450, 713, 1382 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 923, 955 |
| AspLEI | GCGC | 2 cut(s) | 960, 2052 |
| AspS9I | GGNCC | 1 cut(s) | 1134 |
| AsuC2I | CCSGG | 1 cut(s) | 1898 |
| AsuHPI | GGTGA | 8 cut(s) | 56, 85, 547, 710, 729, 1796, 2005, 2336 |
| AvaI | CYCGRG | 1 cut(s) | 699 |
| AvaII | GGWCC | 1 cut(s) | 1134 |
| AxyI | CCTNAGG | 1 cut(s) | 2292 |
| BaeGI | GKGCMC | 2 cut(s) | 1741, 2264 |
| BanII | GRGCYC | 2 cut(s) | 9, 1347 |
| BbsI | GAAGAC | 2 cut(s) | 1709, 1875 |
| Bbv12I | GWGCWC | 3 cut(s) | 9, 1171, 1638 |
| BbvCI | CCTCAGC | 3 cut(s) | 918, 1053, 2095 |
| BbvI | GCAGC | 7 cut(s) | 553, 565, 718, 1315, 1814, 2133, 2312 |
| BccI | CCATC | 5 cut(s) | 1270, 1474, 1671, 2254, 2300 |
| BceAI | ACGGC | 3 cut(s) | 49, 2036, 2438 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1327, 1361, 1474, 1508, 2336, 2370 |
| BciT130I | CCWGG | 1 cut(s) | 1618 |
| BcnI | CCSGG | 1 cut(s) | 1898 |
| BcoDI | GTCTC | 2 cut(s) | 72, 2370 |
| BfaI | CTAG | 4 cut(s) | 405, 1157, 1734, 1811 |
| BfmI | CTRYAG | 1 cut(s) | 677 |
| BglII | AGATCT | 1 cut(s) | 1396 |
| BisI | GCNGC | 9 cut(s) | 101, 154, 567, 579, 732, 1329, 1828, 2147, 2301 |
| BlpI | GCTNAGC | 2 cut(s) | 37, 2035 |
| BlsI | GCNGC | 9 cut(s) | 102, 155, 568, 580, 733, 1330, 1829, 2148, 2302 |
| BmcAI | AGTACT | 1 cut(s) | 1560 |
| Bme1390I | CCNGG | 2 cut(s) | 1618, 1898 |
| Bme18I | GGWCC | 1 cut(s) | 1134 |
| BmeT110I | CYCGRG | 1 cut(s) | 699 |
| BmgBI | CACGTC | 1 cut(s) | 86 |
| BmgT120I | GGNCC | 1 cut(s) | 1134 |
| BmiI | GGNNCC | 1 cut(s) | 1652 |
| BmrFI | CCNGG | 2 cut(s) | 1618, 1898 |
| BpiI | GAAGAC | 2 cut(s) | 1709, 1875 |
| BpmI | CTGGAG | 5 cut(s) | 532, 1344, 1988, 2010, 2121 |
| Bpu10I | CCTNAGC | 3 cut(s) | 918, 1053, 2095 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 37, 2035 |
| BpuEI | CTTGAG | 1 cut(s) | 1316 |
| BpuMI | CCSGG | 1 cut(s) | 1898 |
| BsaJI | CCNNGG | 6 cut(s) | 432, 834, 1697, 1780, 1897, 2140 |
| BsaWI | WCCGGW | 1 cut(s) | 70 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 32, 57, 727, 1290, 1713, 2030, 2296 |
| Bse118I | RCCGGY | 2 cut(s) | 96, 2191 |
| Bse1I | ACTGG | 3 cut(s) | 2005, 2027, 2240 |
| Bse21I | CCTNAGG | 1 cut(s) | 2292 |
| Bse3DI | GCAATG | 4 cut(s) | 26, 426, 1345, 2156 |
| BseBI | CCWGG | 1 cut(s) | 1618 |
| BseDI | CCNNGG | 6 cut(s) | 432, 834, 1697, 1780, 1897, 2140 |
| BseGI | GGATG | 6 cut(s) | 22, 764, 1063, 1510, 1576, 1803 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 32, 57, 727, 1290, 1713, 2030, 2296 |
| BseMI | GCAATG | 4 cut(s) | 26, 426, 1345, 2156 |
| BseNI | ACTGG | 3 cut(s) | 2005, 2027, 2240 |
| BseSI | GKGCMC | 2 cut(s) | 1741, 2264 |
| BseX3I | CGGCCG | 1 cut(s) | 98 |
| BseXI | GCAGC | 7 cut(s) | 553, 565, 718, 1315, 1814, 2133, 2312 |
| Bsh1236I | CGCG | 1 cut(s) | 2358 |
| Bsh1285I | CGRYCG | 1 cut(s) | 101 |
| BshFI | GGCC | 4 cut(s) | 100, 648, 2023, 2110 |
| BsiEI | CGRYCG | 1 cut(s) | 101 |
| BsiHKAI | GWGCWC | 3 cut(s) | 9, 1171, 1638 |
| BsiHKCI | CYCGRG | 1 cut(s) | 699 |
| BsiSI | CCGG | 4 cut(s) | 71, 97, 1897, 2192 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 32, 57, 727, 1290, 1713, 2030, 2296 |
| BsmAI | GTCTC | 2 cut(s) | 72, 2370 |
| BsmBI | CGTCTC | 2 cut(s) | 72, 2370 |
| BsnI | GGCC | 4 cut(s) | 100, 648, 2023, 2110 |
| BsoBI | CYCGRG | 1 cut(s) | 699 |
| Bsp1286I | GDGCHC | 6 cut(s) | 9, 1171, 1347, 1638, 1741, 2264 |
| Bsp143I | GATC | 3 cut(s) | 1396, 1933, 2265 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 37, 2035 |
| Bsp19I | CCATGG | 3 cut(s) | 432, 1697, 1780 |
| Bsp68I | TCGCGA | 1 cut(s) | 2358 |
| BspACI | CCGC | 5 cut(s) | 101, 153, 659, 1300, 1894 |
| BspANI | GGCC | 4 cut(s) | 100, 648, 2023, 2110 |
| BspFNI | CGCG | 1 cut(s) | 2358 |
| BspLI | GGNNCC | 1 cut(s) | 1652 |
| BspMAI | CTGCAG | 1 cut(s) | 681 |
| BspPI | GGATC | 2 cut(s) | 1928, 2260 |
| BspQI | GCTCTTC | 1 cut(s) | 2226 |
| BsrBI | CCGCTC | 1 cut(s) | 1300 |
| BsrDI | GCAATG | 4 cut(s) | 26, 426, 1345, 2156 |
| BsrFI | RCCGGY | 2 cut(s) | 96, 2191 |
| BsrI | ACTGG | 3 cut(s) | 2005, 2027, 2240 |
| BssAI | RCCGGY | 2 cut(s) | 96, 2191 |
| BssECI | CCNNGG | 6 cut(s) | 432, 834, 1697, 1780, 1897, 2140 |
| BssMI | GATC | 3 cut(s) | 1396, 1933, 2265 |
| BssNAI | GTATAC | 1 cut(s) | 254 |
| BssT1I | CCWWGG | 4 cut(s) | 432, 1697, 1780, 2140 |
| Bst1107I | GTATAC | 1 cut(s) | 254 |
| Bst2UI | CCWGG | 1 cut(s) | 1618 |
| Bst4CI | ACNGT | 4 cut(s) | 1163, 1492, 1685, 2119 |
| Bst6I | CTCTTC | 3 cut(s) | 1245, 1762, 2226 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 428, 563, 2218 |
| BstC8I | GCNNGC | 7 cut(s) | 209, 424, 897, 1292, 1856, 2223, 2427 |
| BstDSI | CCRYGG | 3 cut(s) | 432, 1697, 1780 |
| BstF5I | GGATG | 6 cut(s) | 22, 764, 1063, 1510, 1576, 1803 |
| BstFNI | CGCG | 1 cut(s) | 2358 |
| BstHHI | GCGC | 2 cut(s) | 960, 2052 |
| BstKTI | GATC | 3 cut(s) | 1399, 1936, 2268 |
| BstMAI | GTCTC | 2 cut(s) | 72, 2370 |
| BstMBI | GATC | 3 cut(s) | 1396, 1933, 2265 |
| BstMCI | CGRYCG | 1 cut(s) | 101 |
| BstNI | CCWGG | 1 cut(s) | 1618 |
| BstNSI | RCATGY | 6 cut(s) | 173, 623, 1416, 1525, 2225, 2429 |
| BstSCI | CCNGG | 2 cut(s) | 1616, 1896 |
| BstSFI | CTRYAG | 1 cut(s) | 677 |
| BstSLI | GKGCMC | 2 cut(s) | 1741, 2264 |
| BstUI | CGCG | 1 cut(s) | 2358 |
| BstV1I | GCAGC | 7 cut(s) | 553, 565, 718, 1315, 1814, 2133, 2312 |
| BstV2I | GAAGAC | 2 cut(s) | 1709, 1875 |
| BstX2I | RGATCY | 2 cut(s) | 1396, 1933 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1617 |
| BstYI | RGATCY | 2 cut(s) | 1396, 1933 |
| BstZ17I | GTATAC | 1 cut(s) | 254 |
| BstZI | CGGCCG | 1 cut(s) | 98 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2292 |
| BsuRI | GGCC | 4 cut(s) | 100, 648, 2023, 2110 |
| BtgI | CCRYGG | 3 cut(s) | 432, 1697, 1780 |
| BtrI | CACGTC | 1 cut(s) | 86 |
| BtsCI | GGATG | 6 cut(s) | 22, 764, 1063, 1510, 1576, 1803 |
| BtsIMutI | CAGTG | 2 cut(s) | 1698, 2247 |
| BtuMI | TCGCGA | 1 cut(s) | 2358 |
| Cac8I | GCNNGC | 7 cut(s) | 209, 424, 897, 1292, 1856, 2223, 2427 |
| CaiI | CAGNNNCTG | 2 cut(s) | 857, 1052 |
| CfoI | GCGC | 2 cut(s) | 960, 2052 |
| Cfr10I | RCCGGY | 2 cut(s) | 96, 2191 |
| Cfr13I | GGNCC | 1 cut(s) | 1134 |
| Csp6I | GTAC | 6 cut(s) | 167, 515, 804, 1553, 1559, 1902 |
| CviQI | GTAC | 6 cut(s) | 167, 515, 804, 1553, 1559, 1902 |
| DpnI | GATC | 3 cut(s) | 1398, 1935, 2267 |
| DpnII | GATC | 3 cut(s) | 1396, 1933, 2265 |
| DraI | TTTAAA | 1 cut(s) | 1435 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1969 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1969 |
| EaeI | YGGCCR | 1 cut(s) | 98 |
| EagI | CGGCCG | 1 cut(s) | 98 |
| Eam1104I | CTCTTC | 3 cut(s) | 1245, 1762, 2226 |
| EarI | CTCTTC | 3 cut(s) | 1245, 1762, 2226 |
| EciI | GGCGGA | 2 cut(s) | 648, 1883 |
| Ecl136II | GAGCTC | 1 cut(s) | 7 |
| EclXI | CGGCCG | 1 cut(s) | 98 |
| Eco130I | CCWWGG | 4 cut(s) | 432, 1697, 1780, 2140 |
| Eco24I | GRGCYC | 2 cut(s) | 9, 1347 |
| Eco47I | GGWCC | 1 cut(s) | 1134 |
| Eco52I | CGGCCG | 1 cut(s) | 98 |
| Eco53kI | GAGCTC | 1 cut(s) | 7 |
| Eco57I | CTGAAG | 8 cut(s) | 624, 834, 1226, 1380, 1887, 1928, 2250, 2255 |
| Eco81I | CCTNAGG | 1 cut(s) | 2292 |
| Eco88I | CYCGRG | 1 cut(s) | 699 |
| EcoICRI | GAGCTC | 1 cut(s) | 7 |
| EcoRI | GAATTC | 1 cut(s) | 1382 |
| EcoRII | CCWGG | 1 cut(s) | 1616 |
| EcoT14I | CCWWGG | 4 cut(s) | 432, 1697, 1780, 2140 |
| EcoT22I | ATGCAT | 1 cut(s) | 940 |
| EcoT38I | GRGCYC | 2 cut(s) | 9, 1347 |
| ErhI | CCWWGG | 4 cut(s) | 432, 1697, 1780, 2140 |
| Esp3I | CGTCTC | 2 cut(s) | 72, 2370 |
| FalI | AAGNNNNNCTT | 7 cut(s) | 1023, 1055, 1650, 1682, 1860, 1892, 2427 |
| FblI | GTMKAC | 3 cut(s) | 253, 468, 2136 |
| Fnu4HI | GCNGC | 9 cut(s) | 101, 154, 567, 579, 732, 1329, 1828, 2147, 2301 |
| FokI | GGATG | 6 cut(s) | 9, 751, 1070, 1497, 1563, 1790 |
| FriOI | GRGCYC | 2 cut(s) | 9, 1347 |
| Fsp4HI | GCNGC | 9 cut(s) | 101, 154, 567, 579, 732, 1329, 1828, 2147, 2301 |
| FspBI | CTAG | 4 cut(s) | 405, 1157, 1734, 1811 |
| FspI | TGCGCA | 1 cut(s) | 2051 |
| GlaI | GCGC | 2 cut(s) | 959, 2051 |
| GluI | GCNGC | 9 cut(s) | 101, 154, 567, 579, 732, 1329, 1828, 2147, 2301 |
| GsuI | CTGGAG | 5 cut(s) | 532, 1344, 1988, 2010, 2121 |
| HaeIII | GGCC | 4 cut(s) | 100, 648, 2023, 2110 |
| HapII | CCGG | 4 cut(s) | 71, 97, 1897, 2192 |
| HhaI | GCGC | 2 cut(s) | 960, 2052 |
| Hin6I | GCGC | 2 cut(s) | 958, 2050 |
| HinP1I | GCGC | 2 cut(s) | 958, 2050 |
| HincII | GTYRAC | 2 cut(s) | 478, 607 |
| HindII | GTYRAC | 2 cut(s) | 478, 607 |
| HindIII | AAGCTT | 3 cut(s) | 497, 1197, 2328 |
| HinfI | GANTC | 8 cut(s) | 47, 725, 854, 971, 1814, 1956, 1963, 2090 |
| HpaII | CCGG | 4 cut(s) | 71, 97, 1897, 2192 |
| HphI | GGTGA | 8 cut(s) | 56, 85, 547, 710, 729, 1796, 2005, 2336 |
| Hpy166II | GTNNAC | 5 cut(s) | 254, 469, 478, 607, 2137 |
| Hpy8I | GTNNAC | 5 cut(s) | 254, 469, 478, 607, 2137 |
| Hpy99I | CGWCG | 1 cut(s) | 87 |
| HpyCH4III | ACNGT | 4 cut(s) | 1163, 1492, 1685, 2119 |
| HpyCH4IV | ACGT | 2 cut(s) | 85, 2363 |
| HpySE526I | ACGT | 2 cut(s) | 85, 2363 |
| HspAI | GCGC | 2 cut(s) | 958, 2050 |
| Kzo9I | GATC | 3 cut(s) | 1396, 1933, 2265 |
| LguI | GCTCTTC | 1 cut(s) | 2226 |
| LmnI | GCTCC | 3 cut(s) | 4, 1325, 1650 |
| Lsp1109I | GCAGC | 7 cut(s) | 553, 565, 718, 1315, 1814, 2133, 2312 |
| MaeI | CTAG | 4 cut(s) | 405, 1157, 1734, 1811 |
| MaeII | ACGT | 2 cut(s) | 85, 2363 |
| MaeIII | GTNAC | 4 cut(s) | 1588, 1861, 2011, 2390 |
| MalI | GATC | 3 cut(s) | 1398, 1935, 2267 |
| MbiI | CCGCTC | 1 cut(s) | 1300 |
| MboI | GATC | 3 cut(s) | 1396, 1933, 2265 |
| MfeI | CAATTG | 1 cut(s) | 1230 |
| MflI | RGATCY | 2 cut(s) | 1396, 1933 |
| MhlI | GDGCHC | 6 cut(s) | 9, 1171, 1347, 1638, 1741, 2264 |
| MlyI | GAGTC | 2 cut(s) | 1957, 1965 |
| MmeI | TCCRAC | 2 cut(s) | 106, 311 |
| Mph1103I | ATGCAT | 1 cut(s) | 940 |
| MseI | TTAA | 5 cut(s) | 417, 1035, 1191, 1434, 1467 |
| MslI | CAYNNNNRTG | 3 cut(s) | 431, 533, 1026 |
| MspA1I | CMGCKG | 3 cut(s) | 41, 2099, 2303 |
| MspI | CCGG | 4 cut(s) | 71, 97, 1897, 2192 |
| MspR9I | CCNGG | 2 cut(s) | 1618, 1898 |
| MunI | CAATTG | 1 cut(s) | 1230 |
| MvaI | CCWGG | 1 cut(s) | 1618 |
| MvnI | CGCG | 1 cut(s) | 2358 |
| NciI | CCSGG | 1 cut(s) | 1898 |
| NcoI | CCATGG | 3 cut(s) | 432, 1697, 1780 |
| NdeII | GATC | 3 cut(s) | 1396, 1933, 2265 |
| NlaIV | GGNNCC | 1 cut(s) | 1652 |
| NmeAIII | GCCGAG | 1 cut(s) | 859 |
| NmuCI | GTSAC | 2 cut(s) | 1588, 2011 |
| NruI | TCGCGA | 1 cut(s) | 2358 |
| NsbI | TGCGCA | 1 cut(s) | 2051 |
| NsiI | ATGCAT | 1 cut(s) | 940 |
| NspI | RCATGY | 6 cut(s) | 173, 623, 1416, 1525, 2225, 2429 |
| PaeI | GCATGC | 2 cut(s) | 2225, 2429 |
| PaeR7I | CTCGAG | 1 cut(s) | 699 |
| PciI | ACATGT | 2 cut(s) | 169, 619 |
| PciSI | GCTCTTC | 1 cut(s) | 2226 |
| PfeI | GAWTC | 6 cut(s) | 47, 725, 854, 971, 1814, 2090 |
| PflFI | GACNNNGTC | 1 cut(s) | 473 |
| PkrI | GCNGC | 9 cut(s) | 102, 155, 568, 580, 733, 1330, 1829, 2148, 2302 |
| PleI | GAGTC | 2 cut(s) | 1957, 1964 |
| PpsI | GAGTC | 2 cut(s) | 1957, 1964 |
| PscI | ACATGT | 2 cut(s) | 169, 619 |
| Psp124BI | GAGCTC | 1 cut(s) | 9 |
| Psp6I | CCWGG | 1 cut(s) | 1616 |
| PspGI | CCWGG | 1 cut(s) | 1616 |
| PspN4I | GGNNCC | 1 cut(s) | 1652 |
| PspPI | GGNCC | 1 cut(s) | 1134 |
| PstI | CTGCAG | 1 cut(s) | 681 |
| PstNI | CAGNNNCTG | 2 cut(s) | 857, 1052 |
| PsuI | RGATCY | 2 cut(s) | 1396, 1933 |
| PsyI | GACNNNGTC | 1 cut(s) | 473 |
| PvuII | CAGCTG | 3 cut(s) | 41, 2099, 2303 |
| RruI | TCGCGA | 1 cut(s) | 2358 |
| RsaI | GTAC | 6 cut(s) | 168, 516, 805, 1554, 1560, 1903 |
| RsaNI | GTAC | 6 cut(s) | 167, 515, 804, 1553, 1559, 1902 |
| RseI | CAYNNNNRTG | 3 cut(s) | 431, 533, 1026 |
| SacI | GAGCTC | 1 cut(s) | 9 |
| SapI | GCTCTTC | 1 cut(s) | 2226 |
| SaqAI | TTAA | 5 cut(s) | 417, 1035, 1191, 1434, 1467 |
| SatI | GCNGC | 9 cut(s) | 101, 154, 567, 579, 732, 1329, 1828, 2147, 2301 |
| Sau3AI | GATC | 3 cut(s) | 1396, 1933, 2265 |
| Sau96I | GGNCC | 1 cut(s) | 1134 |
| ScaI | AGTACT | 1 cut(s) | 1560 |
| SchI | GAGTC | 2 cut(s) | 1957, 1965 |
| ScrFI | CCNGG | 2 cut(s) | 1618, 1898 |
| SduI | GDGCHC | 6 cut(s) | 9, 1171, 1347, 1638, 1741, 2264 |
| SfcI | CTRYAG | 1 cut(s) | 677 |
| Sfr274I | CTCGAG | 1 cut(s) | 699 |
| SinI | GGWCC | 1 cut(s) | 1134 |
| SlaI | CTCGAG | 1 cut(s) | 699 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 431, 533, 1026 |
| SmlI | CTYRAG | 2 cut(s) | 699, 1295 |
| SmoI | CTYRAG | 2 cut(s) | 699, 1295 |
| SphI | GCATGC | 2 cut(s) | 2225, 2429 |
| SsiI | CCGC | 5 cut(s) | 101, 153, 659, 1300, 1894 |
| SspI | AATATT | 2 cut(s) | 781, 1147 |
| SspMI | CTAG | 4 cut(s) | 405, 1157, 1734, 1811 |
| SstI | GAGCTC | 1 cut(s) | 9 |
| StyD4I | CCNGG | 2 cut(s) | 1616, 1896 |
| StyI | CCWWGG | 4 cut(s) | 432, 1697, 1780, 2140 |
| TaaI | ACNGT | 4 cut(s) | 1163, 1492, 1685, 2119 |
| TaiI | ACGT | 2 cut(s) | 88, 2366 |
| TaqI | TCGA | 4 cut(s) | 700, 1165, 1315, 1885 |
| TatI | WGTACW | 2 cut(s) | 803, 1558 |
| TauI | GCSGC | 2 cut(s) | 103, 156 |
| TfiI | GAWTC | 6 cut(s) | 47, 725, 854, 971, 1814, 2090 |
| Tru1I | TTAA | 5 cut(s) | 417, 1035, 1191, 1434, 1467 |
| Tru9I | TTAA | 5 cut(s) | 417, 1035, 1191, 1434, 1467 |
| TscAI | CASTG | 2 cut(s) | 1698, 2247 |
| TseFI | GTSAC | 2 cut(s) | 1588, 2011 |
| TseI | GCWGC | 7 cut(s) | 566, 578, 731, 1328, 1827, 2146, 2300 |
| Tsp45I | GTSAC | 2 cut(s) | 1588, 2011 |
| TspGWI | ACGGA | 2 cut(s) | 379, 1729 |
| TspRI | CASTG | 2 cut(s) | 1698, 2247 |
| Tth111I | GACNNNGTC | 1 cut(s) | 473 |
| VpaK11BI | GGWCC | 1 cut(s) | 1134 |
| XapI | RAATTY | 4 cut(s) | 246, 450, 713, 1382 |
| XbaI | TCTAGA | 2 cut(s) | 404, 1156 |
| XceI | RCATGY | 6 cut(s) | 173, 623, 1416, 1525, 2225, 2429 |
| XhoI | CTCGAG | 1 cut(s) | 699 |
| XmiI | GTMKAC | 3 cut(s) | 253, 468, 2136 |
| XspI | CTAG | 4 cut(s) | 405, 1157, 1734, 1811 |
| ZrmI | AGTACT | 1 cut(s) | 1560 |
| Zsp2I | ATGCAT | 1 cut(s) | 940 |