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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G22450 AT5G22450 AT5G22450 |
| fragaria_vesca | FvH4_3g24820 FvH4_3g24820 |
| malus_domestica | MD03G1143400.v1.1 MD11G1164200.v1.1 |
| prunus_persica | Prupe.6G129000_v2.0.a1 Prupe.6G129000_v2.0.a1 Prupe.6G129000_v2.0.a1 Prupe.6G129000_v2.0.a1 Prupe.6G129000_v2.0.a1 Prupe.6G129000_v2.0.a1 Prupe.6G129000_v2.0.a1 |
| pyrus_communis | pycom03g09860 pycom11g13560 |
| rosa_chinensis | RchiOBHm_Chr5g0044401 |
| rosa_laevigata | RLG00000034271 |
| rosa_multiflora | Rmu_sc0004741.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00036550 |
| rosa_rugosa | Rorug05G0213700 Rorug05G0213700 |
| rosa_samantha | Rh5AG298300 Rh5BG305600 Rh5CG332600 Rh5DG314800 |
| rosa_wichuraiana | Rw5G027600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 544 |
| AatII | GACGTC | 1 cut(s) | 503 |
| Acc36I | ACCTGC | 1 cut(s) | 544 |
| AccB1I | GGYRCC | 1 cut(s) | 1036 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1046, 2328, 3448 |
| AccII | CGCG | 2 cut(s) | 492, 3410 |
| AccIII | TCCGGA | 2 cut(s) | 1094, 2665 |
| AciI | CCGC | 7 cut(s) | 517, 628, 839, 1975, 3125, 3158, 3616 |
| AclI | AACGTT | 1 cut(s) | 679 |
| AclWI | GGATC | 9 cut(s) | 666, 1369, 1548, 2850, 3002, 3145, 3178, 3301, 3528 |
| AcsI | RAATTY | 9 cut(s) | 7, 417, 1258, 1675, 2066, 2143, 2254, 2975, 3676 |
| AcuI | CTGAAG | 4 cut(s) | 569, 1400, 2367, 2709 |
| AcyI | GRCGYC | 1 cut(s) | 500 |
| AdeI | CACNNNGTG | 1 cut(s) | 3476 |
| AfaI | GTAC | 6 cut(s) | 323, 871, 882, 1197, 2234, 2463 |
| AhlI | ACTAGT | 1 cut(s) | 2830 |
| AjnI | CCWGG | 5 cut(s) | 272, 1642, 2619, 2637, 3702 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 907, 939, 1920, 1952 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2881, 2913 |
| Alw21I | GWGCWC | 1 cut(s) | 907 |
| Alw26I | GTCTC | 5 cut(s) | 343, 1219, 2019, 2663, 3782 |
| AlwI | GGATC | 9 cut(s) | 666, 1369, 1548, 2850, 3002, 3145, 3178, 3301, 3528 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 509, 873 |
| Ama87I | CYCGRG | 1 cut(s) | 121 |
| Aor13HI | TCCGGA | 2 cut(s) | 1094, 2665 |
| AoxI | GGCC | 7 cut(s) | 270, 465, 1206, 1640, 1793, 3604, 3751 |
| ApaI | GGGCCC | 1 cut(s) | 3608 |
| ApoI | RAATTY | 9 cut(s) | 7, 417, 1258, 1675, 2066, 2143, 2254, 2975, 3676 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 164, 196 |
| AseI | ATTAAT | 1 cut(s) | 2706 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1027, 1048, 3364, 3466 |
| AspA2I | CCTAGG | 1 cut(s) | 2561 |
| AspLEI | GCGC | 2 cut(s) | 494, 1313 |
| AsuC2I | CCSGG | 1 cut(s) | 29 |
| AvaI | CYCGRG | 1 cut(s) | 121 |
| AvaII | GGWCC | 5 cut(s) | 381, 1353, 1498, 1625, 3439 |
| AvrII | CCTAGG | 1 cut(s) | 2561 |
| AxyI | CCTNAGG | 1 cut(s) | 978 |
| BaeGI | GKGCMC | 2 cut(s) | 1039, 3608 |
| BanI | GGYRCC | 1 cut(s) | 1036 |
| BanII | GRGCYC | 2 cut(s) | 90, 3608 |
| BauI | CACGAG | 2 cut(s) | 1785, 2152 |
| BbsI | GAAGAC | 2 cut(s) | 465, 3753 |
| Bbv12I | GWGCWC | 1 cut(s) | 907 |
| BbvCI | CCTCAGC | 1 cut(s) | 1287 |
| BccI | CCATC | 9 cut(s) | 52, 201, 853, 1586, 1636, 2244, 3126, 3159, 3646 |
| BceAI | ACGGC | 2 cut(s) | 2868, 3766 |
| BciT130I | CCWGG | 5 cut(s) | 274, 1644, 2621, 2639, 3704 |
| BciVI | GTATCC | 1 cut(s) | 3193 |
| BclI | TGATCA | 1 cut(s) | 1843 |
| BcnI | CCSGG | 1 cut(s) | 29 |
| BcoDI | GTCTC | 5 cut(s) | 343, 1219, 2019, 2663, 3782 |
| BcuI | ACTAGT | 1 cut(s) | 2830 |
| BfmI | CTRYAG | 4 cut(s) | 1521, 2645, 2808, 3017 |
| BfoI | RGCGCY | 1 cut(s) | 1314 |
| BfuAI | ACCTGC | 1 cut(s) | 544 |
| BfuI | GTATCC | 1 cut(s) | 3193 |
| BglII | AGATCT | 1 cut(s) | 3718 |
| BlnI | CCTAGG | 1 cut(s) | 2561 |
| BmcAI | AGTACT | 1 cut(s) | 882 |
| Bme1390I | CCNGG | 6 cut(s) | 29, 274, 1644, 2621, 2639, 3704 |
| Bme18I | GGWCC | 5 cut(s) | 381, 1353, 1498, 1625, 3439 |
| BmeT110I | CYCGRG | 1 cut(s) | 121 |
| BmiI | GGNNCC | 9 cut(s) | 87, 843, 1038, 1051, 1354, 2099, 3115, 3573, 3606 |
| BmrFI | CCNGG | 6 cut(s) | 29, 274, 1644, 2621, 2639, 3704 |
| BmrI | ACTGGG | 3 cut(s) | 64, 1204, 2448 |
| BmsI | GCATC | 6 cut(s) | 247, 772, 2119, 2749, 3613, 3801 |
| BmuI | ACTGGG | 3 cut(s) | 64, 1204, 2448 |
| BpiI | GAAGAC | 2 cut(s) | 465, 3753 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1999, 2031, 3610, 3642 |
| BpmI | CTGGAG | 3 cut(s) | 663, 1638, 2660 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1287, 1516 |
| BpuEI | CTTGAG | 7 cut(s) | 417, 529, 771, 869, 2555, 2711, 3355 |
| BpuMI | CCSGG | 1 cut(s) | 29 |
| Bsa29I | ATCGAT | 1 cut(s) | 3296 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1842 |
| BsaHI | GRCGYC | 1 cut(s) | 500 |
| BsaI | GGTCTC | 2 cut(s) | 1219, 3782 |
| BsaJI | CCNNGG | 8 cut(s) | 28, 273, 1501, 1643, 2561, 2884, 3447, 3702 |
| BsaWI | WCCGGW | 2 cut(s) | 1094, 2665 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1581, 1611, 2881, 2911 |
| Bse118I | RCCGGY | 1 cut(s) | 3581 |
| Bse1I | ACTGG | 9 cut(s) | 70, 212, 1051, 1129, 1210, 1655, 2454, 2880, 3186 |
| Bse21I | CCTNAGG | 1 cut(s) | 978 |
| Bse3DI | GCAATG | 5 cut(s) | 1509, 2672, 2844, 3112, 3611 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1842 |
| BseAI | TCCGGA | 2 cut(s) | 1094, 2665 |
| BseBI | CCWGG | 5 cut(s) | 274, 1644, 2621, 2639, 3704 |
| BseCI | ATCGAT | 1 cut(s) | 3296 |
| BseDI | CCNNGG | 8 cut(s) | 28, 273, 1501, 1643, 2561, 2884, 3447, 3702 |
| BseGI | GGATG | 8 cut(s) | 175, 193, 742, 1070, 1198, 1710, 2629, 3799 |
| BseJI | GATNNNNATC | 1 cut(s) | 1842 |
| BseMI | GCAATG | 5 cut(s) | 1509, 2672, 2844, 3112, 3611 |
| BseNI | ACTGG | 9 cut(s) | 70, 212, 1051, 1129, 1210, 1655, 2454, 2880, 3186 |
| BseRI | GAGGAG | 1 cut(s) | 2009 |
| BseSI | GKGCMC | 2 cut(s) | 1039, 3608 |
| BseYI | CCCAGC | 1 cut(s) | 1466 |
| BsgI | GTGCAG | 5 cut(s) | 897, 1014, 2928, 2997, 3198 |
| Bsh1236I | CGCG | 2 cut(s) | 492, 3410 |
| BshFI | GGCC | 7 cut(s) | 272, 467, 1208, 1642, 1795, 3606, 3753 |
| BshNI | GGYRCC | 1 cut(s) | 1036 |
| BshVI | ATCGAT | 1 cut(s) | 3296 |
| BsiHKAI | GWGCWC | 1 cut(s) | 907 |
| BsiHKCI | CYCGRG | 1 cut(s) | 121 |
| BsiSI | CCGG | 4 cut(s) | 28, 1095, 2666, 3582 |
| BslFI | GGGAC | 4 cut(s) | 290, 1366, 2345, 2736 |
| BsmAI | GTCTC | 5 cut(s) | 343, 1219, 2019, 2663, 3782 |
| BsmFI | GGGAC | 4 cut(s) | 290, 1366, 2345, 2736 |
| BsmI | GAATGC | 2 cut(s) | 147, 1888 |
| BsnI | GGCC | 7 cut(s) | 272, 467, 1208, 1642, 1795, 3606, 3753 |
| Bso31I | GGTCTC | 2 cut(s) | 1219, 3782 |
| BsoBI | CYCGRG | 1 cut(s) | 121 |
| Bsp120I | GGGCCC | 1 cut(s) | 3604 |
| Bsp1286I | GDGCHC | 4 cut(s) | 90, 907, 1039, 3608 |
| Bsp13I | TCCGGA | 2 cut(s) | 1094, 2665 |
| Bsp1407I | TGTACA | 2 cut(s) | 1195, 2461 |
| BspACI | CCGC | 7 cut(s) | 517, 628, 839, 1975, 3125, 3158, 3616 |
| BspANI | GGCC | 7 cut(s) | 272, 467, 1208, 1642, 1795, 3606, 3753 |
| BspDI | ATCGAT | 1 cut(s) | 3296 |
| BspEI | TCCGGA | 2 cut(s) | 1094, 2665 |
| BspFNI | CGCG | 2 cut(s) | 492, 3410 |
| BspHI | TCATGA | 4 cut(s) | 1056, 1846, 3403, 3763 |
| BspLI | GGNNCC | 9 cut(s) | 87, 843, 1038, 1051, 1354, 2099, 3115, 3573, 3606 |
| BspMAI | CTGCAG | 4 cut(s) | 1525, 2649, 2812, 3021 |
| BspMI | ACCTGC | 1 cut(s) | 544 |
| BspPI | GGATC | 9 cut(s) | 666, 1369, 1548, 2850, 3002, 3145, 3178, 3301, 3528 |
| BspT107I | GGYRCC | 1 cut(s) | 1036 |
| BspTNI | GGTCTC | 2 cut(s) | 1219, 3782 |
| BsrDI | GCAATG | 5 cut(s) | 1509, 2672, 2844, 3112, 3611 |
| BsrFI | RCCGGY | 1 cut(s) | 3581 |
| BsrGI | TGTACA | 2 cut(s) | 1195, 2461 |
| BsrI | ACTGG | 9 cut(s) | 70, 212, 1051, 1129, 1210, 1655, 2454, 2880, 3186 |
| BssAI | RCCGGY | 1 cut(s) | 3581 |
| BssECI | CCNNGG | 8 cut(s) | 28, 273, 1501, 1643, 2561, 2884, 3447, 3702 |
| BssNI | GRCGYC | 1 cut(s) | 500 |
| BssSI | CACGAG | 2 cut(s) | 1785, 2152 |
| BssT1I | CCWWGG | 2 cut(s) | 2561, 3447 |
| Bst2BI | CACGAG | 2 cut(s) | 1785, 2152 |
| Bst2UI | CCWGG | 5 cut(s) | 274, 1644, 2621, 2639, 3704 |
| Bst4CI | ACNGT | 9 cut(s) | 923, 992, 1502, 1551, 2232, 2268, 2478, 3074, 3400 |
| Bst6I | CTCTTC | 4 cut(s) | 341, 1615, 1701, 3702 |
| BstACI | GRCGYC | 1 cut(s) | 500 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1904, 2737, 2997 |
| BstAUI | TGTACA | 2 cut(s) | 1195, 2461 |
| BstDSI | CCRYGG | 2 cut(s) | 1501, 2884 |
| BstEII | GGTNACC | 1 cut(s) | 556 |
| BstF5I | GGATG | 8 cut(s) | 175, 193, 742, 1070, 1198, 1710, 2629, 3799 |
| BstFNI | CGCG | 2 cut(s) | 492, 3410 |
| BstH2I | RGCGCY | 1 cut(s) | 1314 |
| BstHHI | GCGC | 2 cut(s) | 494, 1313 |
| BstMAI | GTCTC | 5 cut(s) | 343, 1219, 2019, 2663, 3782 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 64, 85, 1520, 1874, 1883, 1904, 2737, 2997 |
| BstNI | CCWGG | 5 cut(s) | 274, 1644, 2621, 2639, 3704 |
| BstNSI | RCATGY | 3 cut(s) | 2452, 2522, 3105 |
| BstPI | GGTNACC | 1 cut(s) | 556 |
| BstSCI | CCNGG | 6 cut(s) | 27, 272, 1642, 2619, 2637, 3702 |
| BstSFI | CTRYAG | 4 cut(s) | 1521, 2645, 2808, 3017 |
| BstSLI | GKGCMC | 2 cut(s) | 1039, 3608 |
| BstUI | CGCG | 2 cut(s) | 492, 3410 |
| BstV2I | GAAGAC | 2 cut(s) | 465, 3753 |
| BstX2I | RGATCY | 4 cut(s) | 3137, 3170, 3533, 3718 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 182, 1217 |
| BstYI | RGATCY | 4 cut(s) | 3137, 3170, 3533, 3718 |
| Bsu15I | ATCGAT | 1 cut(s) | 3296 |
| Bsu36I | CCTNAGG | 1 cut(s) | 978 |
| BsuI | GTATCC | 1 cut(s) | 3193 |
| BsuRI | GGCC | 7 cut(s) | 272, 467, 1208, 1642, 1795, 3606, 3753 |
| BsuTUI | ATCGAT | 1 cut(s) | 3296 |
| BtgI | CCRYGG | 2 cut(s) | 1501, 2884 |
| BtsCI | GGATG | 8 cut(s) | 175, 193, 742, 1070, 1198, 1710, 2629, 3799 |
| BtsI | GCAGTG | 3 cut(s) | 699, 3014, 3632 |
| BveI | ACCTGC | 1 cut(s) | 544 |
| CaiI | CAGNNNCTG | 2 cut(s) | 509, 873 |
| CciI | TCATGA | 4 cut(s) | 1056, 1846, 3403, 3763 |
| CfoI | GCGC | 2 cut(s) | 494, 1313 |
| Cfr10I | RCCGGY | 1 cut(s) | 3581 |
| ClaI | ATCGAT | 1 cut(s) | 3296 |
| CseI | GACGC | 2 cut(s) | 249, 3416 |
| Csp6I | GTAC | 6 cut(s) | 322, 870, 881, 1196, 2233, 2462 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2913, 2948, 3652, 3687 |
| CviQI | GTAC | 6 cut(s) | 322, 870, 881, 1196, 2233, 2462 |
| DraIII | CACNNNGTG | 1 cut(s) | 3476 |
| Eam1104I | CTCTTC | 4 cut(s) | 341, 1615, 1701, 3702 |
| EarI | CTCTTC | 4 cut(s) | 341, 1615, 1701, 3702 |
| EciI | GGCGGA | 1 cut(s) | 854 |
| Eco130I | CCWWGG | 2 cut(s) | 2561, 3447 |
| Eco147I | AGGCCT | 1 cut(s) | 1642 |
| Eco24I | GRGCYC | 2 cut(s) | 90, 3608 |
| Eco31I | GGTCTC | 2 cut(s) | 1219, 3782 |
| Eco47I | GGWCC | 5 cut(s) | 381, 1353, 1498, 1625, 3439 |
| Eco57I | CTGAAG | 4 cut(s) | 569, 1400, 2367, 2709 |
| Eco81I | CCTNAGG | 1 cut(s) | 978 |
| Eco88I | CYCGRG | 1 cut(s) | 121 |
| Eco91I | GGTNACC | 1 cut(s) | 556 |
| EcoO65I | GGTNACC | 1 cut(s) | 556 |
| EcoRI | GAATTC | 2 cut(s) | 1675, 2066 |
| EcoRII | CCWGG | 5 cut(s) | 272, 1642, 2619, 2637, 3702 |
| EcoT14I | CCWWGG | 2 cut(s) | 2561, 3447 |
| EcoT22I | ATGCAT | 1 cut(s) | 2061 |
| EcoT38I | GRGCYC | 2 cut(s) | 90, 3608 |
| ErhI | CCWWGG | 2 cut(s) | 2561, 3447 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2753, 2785, 3364, 3396, 3451, 3483 |
| FaqI | GGGAC | 4 cut(s) | 290, 1366, 2345, 2736 |
| FauI | CCCGC | 2 cut(s) | 510, 635 |
| FauNDI | CATATG | 1 cut(s) | 776 |
| FbaI | TGATCA | 1 cut(s) | 1843 |
| FokI | GGATG | 8 cut(s) | 180, 182, 729, 1057, 1185, 1717, 2636, 3806 |
| FriOI | GRGCYC | 2 cut(s) | 90, 3608 |
| GlaI | GCGC | 2 cut(s) | 493, 1312 |
| GsaI | CCCAGC | 1 cut(s) | 1470 |
| GsuI | CTGGAG | 3 cut(s) | 663, 1638, 2660 |
| HaeII | RGCGCY | 1 cut(s) | 1314 |
| HaeIII | GGCC | 7 cut(s) | 272, 467, 1208, 1642, 1795, 3606, 3753 |
| HapII | CCGG | 4 cut(s) | 28, 1095, 2666, 3582 |
| HgaI | GACGC | 2 cut(s) | 249, 3416 |
| HhaI | GCGC | 2 cut(s) | 494, 1313 |
| Hin1I | GRCGYC | 1 cut(s) | 500 |
| Hin6I | GCGC | 2 cut(s) | 492, 1311 |
| HinP1I | GCGC | 2 cut(s) | 492, 1311 |
| HincII | GTYRAC | 1 cut(s) | 1782 |
| HindII | GTYRAC | 1 cut(s) | 1782 |
| HindIII | AAGCTT | 3 cut(s) | 330, 581, 3276 |
| HpaII | CCGG | 4 cut(s) | 28, 1095, 2666, 3582 |
| Hpy166II | GTNNAC | 8 cut(s) | 25, 719, 1084, 1748, 1782, 1892, 2464, 3515 |
| Hpy8I | GTNNAC | 8 cut(s) | 25, 719, 1084, 1748, 1782, 1892, 2464, 3515 |
| Hpy99I | CGWCG | 1 cut(s) | 2758 |
| HpyCH4III | ACNGT | 9 cut(s) | 923, 992, 1502, 1551, 2232, 2268, 2478, 3074, 3400 |
| HpyCH4IV | ACGT | 4 cut(s) | 500, 679, 2313, 2496 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 64, 85, 1520, 1874, 1883, 1904, 2737, 2997 |
| HpySE526I | ACGT | 4 cut(s) | 500, 679, 2313, 2496 |
| Hsp92I | GRCGYC | 1 cut(s) | 500 |
| HspAI | GCGC | 2 cut(s) | 492, 1311 |
| Kpn2I | TCCGGA | 2 cut(s) | 1094, 2665 |
| KroI | GCCGGC | 1 cut(s) | 3581 |
| KroNI | GCCGGC | 1 cut(s) | 3583 |
| Ksp22I | TGATCA | 1 cut(s) | 1843 |
| LweI | GCATC | 6 cut(s) | 247, 772, 2119, 2749, 3613, 3801 |
| MaeII | ACGT | 4 cut(s) | 500, 679, 2313, 2496 |
| MaeIII | GTNAC | 5 cut(s) | 556, 1273, 1369, 1505, 3485 |
| MflI | RGATCY | 4 cut(s) | 3137, 3170, 3533, 3718 |
| MhlI | GDGCHC | 4 cut(s) | 90, 907, 1039, 3608 |
| MlyI | GAGTC | 7 cut(s) | 439, 1061, 1805, 2363, 2368, 2718, 3257 |
| MmeI | TCCRAC | 3 cut(s) | 636, 2561, 3331 |
| Mph1103I | ATGCAT | 1 cut(s) | 2061 |
| MroI | TCCGGA | 2 cut(s) | 1094, 2665 |
| MroNI | GCCGGC | 1 cut(s) | 3581 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1027, 1048, 3364, 3466 |
| MseI | TTAA | 5 cut(s) | 966, 2106, 2204, 2706, 3458 |
| MslI | CAYNNNNRTG | 4 cut(s) | 2241, 2469, 2508, 2523 |
| MspA1I | CMGCKG | 3 cut(s) | 536, 929, 1975 |
| MspI | CCGG | 4 cut(s) | 28, 1095, 2666, 3582 |
| MspR9I | CCNGG | 6 cut(s) | 29, 274, 1644, 2621, 2639, 3704 |
| Mva1269I | GAATGC | 2 cut(s) | 147, 1888 |
| MvaI | CCWGG | 5 cut(s) | 274, 1644, 2621, 2639, 3704 |
| MvnI | CGCG | 2 cut(s) | 492, 3410 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 64, 85, 1520, 1874, 1883, 1904, 2737, 2997 |
| NaeI | GCCGGC | 1 cut(s) | 3583 |
| NciI | CCSGG | 1 cut(s) | 29 |
| NdeI | CATATG | 1 cut(s) | 776 |
| NgoMIV | GCCGGC | 1 cut(s) | 3581 |
| NlaIV | GGNNCC | 9 cut(s) | 87, 843, 1038, 1051, 1354, 2099, 3115, 3573, 3606 |
| NmuCI | GTSAC | 2 cut(s) | 556, 1505 |
| NsiI | ATGCAT | 1 cut(s) | 2061 |
| NspI | RCATGY | 3 cut(s) | 2452, 2522, 3105 |
| PaeI | GCATGC | 2 cut(s) | 2452, 2522 |
| PagI | TCATGA | 4 cut(s) | 1056, 1846, 3403, 3763 |
| PaqCI | CACCTGC | 1 cut(s) | 544 |
| PceI | AGGCCT | 1 cut(s) | 1642 |
| PctI | GAATGC | 2 cut(s) | 147, 1888 |
| PdiI | GCCGGC | 1 cut(s) | 3583 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1027, 1048, 3364, 3466 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1046, 2328, 3448 |
| PfoI | TCCNGGA | 1 cut(s) | 2637 |
| PleI | GAGTC | 7 cut(s) | 439, 1061, 1805, 2362, 2368, 2718, 3257 |
| PpsI | GAGTC | 7 cut(s) | 439, 1061, 1805, 2362, 2368, 2718, 3257 |
| PshBI | ATTAAT | 1 cut(s) | 2706 |
| Psp1406I | AACGTT | 1 cut(s) | 679 |
| Psp6I | CCWGG | 5 cut(s) | 272, 1642, 2619, 2637, 3702 |
| PspEI | GGTNACC | 1 cut(s) | 556 |
| PspFI | CCCAGC | 1 cut(s) | 1466 |
| PspGI | CCWGG | 5 cut(s) | 272, 1642, 2619, 2637, 3702 |
| PspN4I | GGNNCC | 9 cut(s) | 87, 843, 1038, 1051, 1354, 2099, 3115, 3573, 3606 |
| PspOMI | GGGCCC | 1 cut(s) | 3604 |
| PstI | CTGCAG | 4 cut(s) | 1525, 2649, 2812, 3021 |
| PstNI | CAGNNNCTG | 2 cut(s) | 509, 873 |
| PsuI | RGATCY | 4 cut(s) | 3137, 3170, 3533, 3718 |
| PvuII | CAGCTG | 2 cut(s) | 536, 929 |
| RsaI | GTAC | 6 cut(s) | 323, 871, 882, 1197, 2234, 2463 |
| RsaNI | GTAC | 6 cut(s) | 322, 870, 881, 1196, 2233, 2462 |
| RseI | CAYNNNNRTG | 4 cut(s) | 2241, 2469, 2508, 2523 |
| SaqAI | TTAA | 5 cut(s) | 966, 2106, 2204, 2706, 3458 |
| ScaI | AGTACT | 1 cut(s) | 882 |
| SchI | GAGTC | 7 cut(s) | 439, 1061, 1805, 2363, 2368, 2718, 3257 |
| ScrFI | CCNGG | 6 cut(s) | 29, 274, 1644, 2621, 2639, 3704 |
| SduI | GDGCHC | 4 cut(s) | 90, 907, 1039, 3608 |
| SfaNI | GCATC | 6 cut(s) | 247, 772, 2119, 2749, 3613, 3801 |
| SfcI | CTRYAG | 4 cut(s) | 1521, 2645, 2808, 3017 |
| SinI | GGWCC | 5 cut(s) | 381, 1353, 1498, 1625, 3439 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 2241, 2469, 2508, 2523 |
| SmlI | CTYRAG | 7 cut(s) | 432, 544, 786, 884, 2570, 2726, 3370 |
| SmoI | CTYRAG | 7 cut(s) | 432, 544, 786, 884, 2570, 2726, 3370 |
| SpeI | ACTAGT | 1 cut(s) | 2830 |
| SphI | GCATGC | 2 cut(s) | 2452, 2522 |
| SseBI | AGGCCT | 1 cut(s) | 1642 |
| SsiI | CCGC | 7 cut(s) | 517, 628, 839, 1975, 3125, 3158, 3616 |
| StuI | AGGCCT | 1 cut(s) | 1642 |
| StyD4I | CCNGG | 6 cut(s) | 27, 272, 1642, 2619, 2637, 3702 |
| StyI | CCWWGG | 2 cut(s) | 2561, 3447 |
| TaaI | ACNGT | 9 cut(s) | 923, 992, 1502, 1551, 2232, 2268, 2478, 3074, 3400 |
| TaiI | ACGT | 4 cut(s) | 503, 682, 2316, 2499 |
| TaqI | TCGA | 7 cut(s) | 371, 1181, 1754, 2971, 3069, 3296, 3780 |
| TatI | WGTACW | 4 cut(s) | 321, 880, 1195, 2461 |
| TauI | GCSGC | 1 cut(s) | 1978 |
| Tru1I | TTAA | 5 cut(s) | 966, 2106, 2204, 2706, 3458 |
| Tru9I | TTAA | 5 cut(s) | 966, 2106, 2204, 2706, 3458 |
| TseFI | GTSAC | 2 cut(s) | 556, 1505 |
| Tsp45I | GTSAC | 2 cut(s) | 556, 1505 |
| TspGWI | ACGGA | 3 cut(s) | 1042, 2833, 2903 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1046, 2328, 3448 |
| VpaK11BI | GGWCC | 5 cut(s) | 381, 1353, 1498, 1625, 3439 |
| VspI | ATTAAT | 1 cut(s) | 2706 |
| XapI | RAATTY | 9 cut(s) | 7, 417, 1258, 1675, 2066, 2143, 2254, 2975, 3676 |
| XbaI | TCTAGA | 1 cut(s) | 263 |
| XceI | RCATGY | 3 cut(s) | 2452, 2522, 3105 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 310 |
| XmaJI | CCTAGG | 1 cut(s) | 2561 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1027, 1048, 3364, 3466 |
| ZraI | GACGTC | 1 cut(s) | 501 |
| ZrmI | AGTACT | 1 cut(s) | 882 |
| Zsp2I | ATGCAT | 1 cut(s) | 2061 |