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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G22450 AT5G22450 AT5G22450 |
| fragaria_vesca | FvH4_3g24820 FvH4_3g24820 |
| malus_domestica | MD03G1143400.v1.1 MD11G1164200.v1.1 |
| prunus_persica | Prupe.6G129000_v2.0.a1 Prupe.6G129000_v2.0.a1 Prupe.6G129000_v2.0.a1 Prupe.6G129000_v2.0.a1 Prupe.6G129000_v2.0.a1 Prupe.6G129000_v2.0.a1 Prupe.6G129000_v2.0.a1 |
| pyrus_communis | pycom03g09860 pycom11g13560 |
| rosa_chinensis | RchiOBHm_Chr5g0044401 |
| rosa_laevigata | RLG00000034271 |
| rosa_multiflora | Rmu_sc0004741.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00036550 |
| rosa_rugosa | Rorug05G0213700 Rorug05G0213700 |
| rosa_samantha | Rh5AG298300 Rh5BG305600 Rh5CG332600 Rh5DG314800 |
| rosa_wichuraiana | Rw5G027600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1024 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2328 |
| AccI | GTMKAC | 1 cut(s) | 1053 |
| AccII | CGCG | 2 cut(s) | 486, 1881 |
| AccIII | TCCGGA | 1 cut(s) | 3053 |
| AclI | AACGTT | 1 cut(s) | 673 |
| AclWI | GGATC | 6 cut(s) | 660, 2658, 2972, 3112, 3222, 3235 |
| AcsI | RAATTY | 3 cut(s) | 2144, 2474, 3625 |
| AcuI | CTGAAG | 5 cut(s) | 563, 1073, 1382, 2939, 3114 |
| AdeI | CACNNNGTG | 1 cut(s) | 3502 |
| AfaI | GTAC | 8 cut(s) | 115, 163, 493, 862, 873, 997, 2234, 2545 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 540, 1034, 1079, 1230, 1542, 2328 |
| AflIII | ACRYGT | 3 cut(s) | 484, 1959, 2899 |
| AhlI | ACTAGT | 1 cut(s) | 2800 |
| AjnI | CCWGG | 7 cut(s) | 10, 406, 805, 1630, 2515, 2589, 3547 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1920, 1952 |
| Alw21I | GWGCWC | 2 cut(s) | 341, 1348 |
| Alw26I | GTCTC | 3 cut(s) | 1021, 1252, 2633 |
| AlwI | GGATC | 6 cut(s) | 660, 2658, 2972, 3112, 3222, 3235 |
| Ama87I | CYCGRG | 1 cut(s) | 3435 |
| Aor13HI | TCCGGA | 1 cut(s) | 3053 |
| AoxI | GGCC | 7 cut(s) | 473, 1188, 1628, 2318, 2704, 3536, 3643 |
| ApaI | GGGCCC | 1 cut(s) | 2322 |
| ApeKI | GCWGC | 8 cut(s) | 38, 292, 1102, 1865, 1978, 2048, 2614, 3610 |
| ApoI | RAATTY | 3 cut(s) | 2144, 2474, 3625 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 164, 196, 2116, 2148 |
| AseI | ATTAAT | 3 cut(s) | 1143, 2676, 3660 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1036, 1324, 3295 |
| AspA2I | CCTAGG | 1 cut(s) | 2531 |
| AspLEI | GCGC | 1 cut(s) | 2925 |
| AvaI | CYCGRG | 1 cut(s) | 3435 |
| AvaII | GGWCC | 7 cut(s) | 172, 1335, 1607, 1907, 2812, 3367, 3586 |
| AvrII | CCTAGG | 1 cut(s) | 2531 |
| BaeGI | GKGCMC | 2 cut(s) | 1027, 2322 |
| BamHI | GGATCC | 1 cut(s) | 3227 |
| BanI | GGYRCC | 1 cut(s) | 1024 |
| BanII | GRGCYC | 3 cut(s) | 90, 341, 2322 |
| BauI | CACGAG | 1 cut(s) | 1773 |
| BbsI | GAAGAC | 5 cut(s) | 459, 588, 1695, 2129, 2220 |
| Bbv12I | GWGCWC | 2 cut(s) | 341, 1348 |
| BbvCI | CCTCAGC | 1 cut(s) | 1992 |
| BbvI | GCAGC | 8 cut(s) | 50, 279, 1114, 1852, 1990, 2035, 2601, 3622 |
| BccI | CCATC | 4 cut(s) | 1544, 1568, 3625, 3698 |
| BceAI | ACGGC | 2 cut(s) | 2838, 3340 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1739, 1773, 2832, 2866 |
| BciT130I | CCWGG | 7 cut(s) | 12, 408, 807, 1632, 2517, 2591, 3549 |
| BclI | TGATCA | 1 cut(s) | 1843 |
| BcoDI | GTCTC | 3 cut(s) | 1021, 1252, 2633 |
| BcuI | ACTAGT | 1 cut(s) | 2800 |
| BfmI | CTRYAG | 7 cut(s) | 840, 1179, 1503, 2264, 2615, 2778, 2987 |
| BglII | AGATCT | 1 cut(s) | 3673 |
| BlnI | CCTAGG | 1 cut(s) | 2531 |
| BlpI | GCTNAGC | 1 cut(s) | 2740 |
| BmcAI | AGTACT | 3 cut(s) | 873, 997, 2545 |
| Bme1390I | CCNGG | 7 cut(s) | 12, 408, 807, 1632, 2517, 2591, 3549 |
| Bme18I | GGWCC | 7 cut(s) | 172, 1335, 1607, 1907, 2812, 3367, 3586 |
| BmeT110I | CYCGRG | 1 cut(s) | 3435 |
| BmrFI | CCNGG | 7 cut(s) | 12, 408, 807, 1632, 2517, 2591, 3549 |
| BmrI | ACTGGG | 5 cut(s) | 64, 1146, 1186, 1451, 3494 |
| BmsI | GCATC | 6 cut(s) | 247, 319, 1690, 1873, 2527, 3070 |
| BmuI | ACTGGG | 5 cut(s) | 64, 1146, 1186, 1451, 3494 |
| BpiI | GAAGAC | 5 cut(s) | 459, 588, 1695, 2129, 2220 |
| BpmI | CTGGAG | 5 cut(s) | 657, 828, 1101, 2630, 2717 |
| Bpu10I | CCTNAGC | 4 cut(s) | 198, 1498, 1992, 3399 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2740 |
| BpuEI | CTTGAG | 3 cut(s) | 523, 860, 3286 |
| BsaBI | GATNNNNATC | 3 cut(s) | 796, 1842, 3084 |
| BsaI | GGTCTC | 1 cut(s) | 1021 |
| BsaWI | WCCGGW | 1 cut(s) | 3053 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1563, 1593, 2655, 2685 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 540, 1034, 1079, 1230, 1542, 2328 |
| Bse3DI | GCAATG | 5 cut(s) | 25, 60, 1491, 2814, 2832 |
| Bse8I | GATNNNNATC | 3 cut(s) | 796, 1842, 3084 |
| BseAI | TCCGGA | 1 cut(s) | 3053 |
| BseBI | CCWGG | 7 cut(s) | 12, 408, 807, 1632, 2517, 2591, 3549 |
| BseGI | GGATG | 5 cut(s) | 571, 724, 2542, 2599, 3754 |
| BseJI | GATNNNNATC | 3 cut(s) | 796, 1842, 3084 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 540, 1034, 1079, 1230, 1542, 2328 |
| BseMI | GCAATG | 5 cut(s) | 25, 60, 1491, 2814, 2832 |
| BseMII | CTCAG | 9 cut(s) | 737, 1289, 1960, 1965, 1973, 1983, 2297, 3345, 3413 |
| BseRI | GAGGAG | 2 cut(s) | 239, 2009 |
| BseSI | GKGCMC | 2 cut(s) | 1027, 2322 |
| BseXI | GCAGC | 8 cut(s) | 50, 279, 1114, 1852, 1990, 2035, 2601, 3622 |
| BseYI | CCCAGC | 4 cut(s) | 1331, 1517, 3223, 3465 |
| BsgI | GTGCAG | 2 cut(s) | 530, 3189 |
| Bsh1236I | CGCG | 2 cut(s) | 486, 1881 |
| Bsh1285I | CGRYCG | 1 cut(s) | 122 |
| BshFI | GGCC | 7 cut(s) | 475, 1190, 1630, 2320, 2706, 3538, 3645 |
| BshNI | GGYRCC | 1 cut(s) | 1024 |
| BsiEI | CGRYCG | 1 cut(s) | 122 |
| BsiHKAI | GWGCWC | 2 cut(s) | 341, 1348 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3435 |
| BsiSI | CCGG | 2 cut(s) | 2648, 3054 |
| BslFI | GGGAC | 3 cut(s) | 1348, 1489, 2345 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 540, 1034, 1079, 1230, 1542, 2328 |
| BsmAI | GTCTC | 3 cut(s) | 1021, 1252, 2633 |
| BsmFI | GGGAC | 3 cut(s) | 1348, 1489, 2345 |
| BsmI | GAATGC | 4 cut(s) | 1408, 1635, 3514, 3565 |
| BsnI | GGCC | 7 cut(s) | 475, 1190, 1630, 2320, 2706, 3538, 3645 |
| Bso31I | GGTCTC | 1 cut(s) | 1021 |
| BsoBI | CYCGRG | 1 cut(s) | 3435 |
| Bsp120I | GGGCCC | 1 cut(s) | 2318 |
| Bsp1286I | GDGCHC | 5 cut(s) | 90, 341, 1027, 1348, 2322 |
| Bsp13I | TCCGGA | 1 cut(s) | 3053 |
| Bsp1407I | TGTACA | 1 cut(s) | 2232 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2740 |
| Bsp19I | CCATGG | 2 cut(s) | 622, 3591 |
| Bsp68I | TCGCGA | 1 cut(s) | 1881 |
| BspANI | GGCC | 7 cut(s) | 475, 1190, 1630, 2320, 2706, 3538, 3645 |
| BspCNI | CTCAG | 9 cut(s) | 738, 1288, 1959, 1964, 1974, 1984, 2298, 3346, 3412 |
| BspEI | TCCGGA | 1 cut(s) | 3053 |
| BspFNI | CGCG | 2 cut(s) | 486, 1881 |
| BspHI | TCATGA | 1 cut(s) | 1846 |
| BspMAI | CTGCAG | 3 cut(s) | 2619, 2782, 2991 |
| BspPI | GGATC | 6 cut(s) | 660, 2658, 2972, 3112, 3222, 3235 |
| BspQI | GCTCTTC | 2 cut(s) | 3186, 3630 |
| BspT107I | GGYRCC | 1 cut(s) | 1024 |
| BspTNI | GGTCTC | 1 cut(s) | 1021 |
| BsrDI | GCAATG | 5 cut(s) | 25, 60, 1491, 2814, 2832 |
| BsrGI | TGTACA | 1 cut(s) | 2232 |
| BssSI | CACGAG | 1 cut(s) | 1773 |
| BssT1I | CCWWGG | 5 cut(s) | 273, 462, 622, 2531, 3591 |
| Bst2BI | CACGAG | 1 cut(s) | 1773 |
| Bst2UI | CCWGG | 7 cut(s) | 12, 408, 807, 1632, 2517, 2591, 3549 |
| Bst6I | CTCTTC | 6 cut(s) | 130, 2946, 3010, 3186, 3254, 3630 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2967 |
| BstAUI | TGTACA | 1 cut(s) | 2232 |
| BstDSI | CCRYGG | 4 cut(s) | 213, 622, 2854, 3591 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1032 |
| BstF5I | GGATG | 5 cut(s) | 571, 724, 2542, 2599, 3754 |
| BstFNI | CGCG | 2 cut(s) | 486, 1881 |
| BstHHI | GCGC | 1 cut(s) | 2925 |
| BstMAI | GTCTC | 3 cut(s) | 1021, 1252, 2633 |
| BstMCI | CGRYCG | 1 cut(s) | 122 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 15, 64, 527, 1290, 1352, 1874, 1883, 2967 |
| BstNI | CCWGG | 7 cut(s) | 12, 408, 807, 1632, 2517, 2591, 3549 |
| BstNSI | RCATGY | 8 cut(s) | 577, 1160, 1902, 1963, 2853, 2903, 3018, 3075 |
| BstSCI | CCNGG | 7 cut(s) | 10, 406, 805, 1630, 2515, 2589, 3547 |
| BstSFI | CTRYAG | 7 cut(s) | 840, 1179, 1503, 2264, 2615, 2778, 2987 |
| BstSLI | GKGCMC | 2 cut(s) | 1027, 2322 |
| BstUI | CGCG | 2 cut(s) | 486, 1881 |
| BstV1I | GCAGC | 8 cut(s) | 50, 279, 1114, 1852, 1990, 2035, 2601, 3622 |
| BstV2I | GAAGAC | 5 cut(s) | 459, 588, 1695, 2129, 2220 |
| BstX2I | RGATCY | 3 cut(s) | 2650, 3227, 3673 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 182, 1199 |
| BstYI | RGATCY | 3 cut(s) | 2650, 3227, 3673 |
| BsuRI | GGCC | 7 cut(s) | 475, 1190, 1630, 2320, 2706, 3538, 3645 |
| BtgI | CCRYGG | 4 cut(s) | 213, 622, 2854, 3591 |
| BtgZI | GCGATG | 1 cut(s) | 1896 |
| BtsCI | GGATG | 5 cut(s) | 571, 724, 2542, 2599, 3754 |
| BtsI | GCAGTG | 2 cut(s) | 693, 1492 |
| BtsIMutI | CAGTG | 6 cut(s) | 77, 693, 1199, 1492, 2462, 3507 |
| BtuMI | TCGCGA | 1 cut(s) | 1881 |
| CciI | TCATGA | 1 cut(s) | 1846 |
| CfoI | GCGC | 1 cut(s) | 2925 |
| CsiI | ACCWGGT | 1 cut(s) | 3547 |
| Csp6I | GTAC | 8 cut(s) | 114, 162, 492, 861, 872, 996, 2233, 2544 |
| CviQI | GTAC | 8 cut(s) | 114, 162, 492, 861, 872, 996, 2233, 2544 |
| DraIII | CACNNNGTG | 1 cut(s) | 3502 |
| Eam1104I | CTCTTC | 6 cut(s) | 130, 2946, 3010, 3186, 3254, 3630 |
| EarI | CTCTTC | 6 cut(s) | 130, 2946, 3010, 3186, 3254, 3630 |
| EciI | GGCGGA | 3 cut(s) | 195, 2740, 3420 |
| Ecl136II | GAGCTC | 1 cut(s) | 339 |
| Eco130I | CCWWGG | 5 cut(s) | 273, 462, 622, 2531, 3591 |
| Eco147I | AGGCCT | 2 cut(s) | 1630, 2706 |
| Eco24I | GRGCYC | 3 cut(s) | 90, 341, 2322 |
| Eco31I | GGTCTC | 1 cut(s) | 1021 |
| Eco47I | GGWCC | 7 cut(s) | 172, 1335, 1607, 1907, 2812, 3367, 3586 |
| Eco53kI | GAGCTC | 1 cut(s) | 339 |
| Eco57I | CTGAAG | 5 cut(s) | 563, 1073, 1382, 2939, 3114 |
| Eco88I | CYCGRG | 1 cut(s) | 3435 |
| EcoICRI | GAGCTC | 1 cut(s) | 339 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1032 |
| EcoO109I | RGGNCCY | 2 cut(s) | 3586, 3644 |
| EcoRII | CCWGG | 7 cut(s) | 10, 406, 805, 1630, 2515, 2589, 3547 |
| EcoT14I | CCWWGG | 5 cut(s) | 273, 462, 622, 2531, 3591 |
| EcoT38I | GRGCYC | 3 cut(s) | 90, 341, 2322 |
| ErhI | CCWWGG | 5 cut(s) | 273, 462, 622, 2531, 3591 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2723, 2755, 3258, 3290, 3295, 3327 |
| FaqI | GGGAC | 3 cut(s) | 1348, 1489, 2345 |
| FauI | CCCGC | 3 cut(s) | 288, 1232, 3116 |
| FauNDI | CATATG | 1 cut(s) | 1417 |
| FbaI | TGATCA | 1 cut(s) | 1843 |
| FblI | GTMKAC | 1 cut(s) | 1053 |
| FokI | GGATG | 5 cut(s) | 578, 731, 2549, 2606, 3761 |
| FriOI | GRGCYC | 3 cut(s) | 90, 341, 2322 |
| GlaI | GCGC | 1 cut(s) | 2924 |
| GsaI | CCCAGC | 4 cut(s) | 1335, 1521, 3227, 3469 |
| GsuI | CTGGAG | 5 cut(s) | 657, 828, 1101, 2630, 2717 |
| HaeIII | GGCC | 7 cut(s) | 475, 1190, 1630, 2320, 2706, 3538, 3645 |
| HapII | CCGG | 2 cut(s) | 2648, 3054 |
| HhaI | GCGC | 1 cut(s) | 2925 |
| Hin6I | GCGC | 1 cut(s) | 2923 |
| HinP1I | GCGC | 1 cut(s) | 2923 |
| HincII | GTYRAC | 4 cut(s) | 1425, 1623, 2522, 3040 |
| HindII | GTYRAC | 4 cut(s) | 1425, 1623, 2522, 3040 |
| HindIII | AAGCTT | 3 cut(s) | 394, 2551, 2737 |
| HpaII | CCGG | 2 cut(s) | 2648, 3054 |
| Hpy99I | CGWCG | 1 cut(s) | 1587 |
| HpyAV | CCTTC | 6 cut(s) | 219, 541, 1083, 1596, 2151, 2240 |
| HpyCH4IV | ACGT | 1 cut(s) | 673 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 15, 64, 527, 1290, 1352, 1874, 1883, 2967 |
| HpySE526I | ACGT | 1 cut(s) | 673 |
| HspAI | GCGC | 1 cut(s) | 2923 |
| Kpn2I | TCCGGA | 1 cut(s) | 3053 |
| Ksp22I | TGATCA | 1 cut(s) | 1843 |
| LguI | GCTCTTC | 2 cut(s) | 3186, 3630 |
| Lsp1109I | GCAGC | 8 cut(s) | 50, 279, 1114, 1852, 1990, 2035, 2601, 3622 |
| LweI | GCATC | 6 cut(s) | 247, 319, 1690, 1873, 2527, 3070 |
| MabI | ACCWGGT | 1 cut(s) | 3547 |
| MaeII | ACGT | 1 cut(s) | 673 |
| MaeIII | GTNAC | 7 cut(s) | 553, 721, 762, 898, 1487, 2170, 2300 |
| MflI | RGATCY | 3 cut(s) | 2650, 3227, 3673 |
| MhlI | GDGCHC | 5 cut(s) | 90, 341, 1027, 1348, 2322 |
| MluI | ACGCGT | 1 cut(s) | 484 |
| MlyI | GAGTC | 7 cut(s) | 433, 854, 1049, 1606, 1993, 2363, 3191 |
| MmeI | TCCRAC | 7 cut(s) | 630, 810, 1065, 1634, 2142, 2373, 2582 |
| MroI | TCCGGA | 1 cut(s) | 3053 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1036, 1324, 3295 |
| MseI | TTAA | 8 cut(s) | 5, 93, 794, 1005, 1143, 2106, 2676, 3660 |
| MslI | CAYNNNNRTG | 4 cut(s) | 2466, 2487, 2502, 3013 |
| MspA1I | CMGCKG | 4 cut(s) | 355, 917, 1981, 3123 |
| MspI | CCGG | 2 cut(s) | 2648, 3054 |
| MspR9I | CCNGG | 7 cut(s) | 12, 408, 807, 1632, 2517, 2591, 3549 |
| Mva1269I | GAATGC | 4 cut(s) | 1408, 1635, 3514, 3565 |
| MvaI | CCWGG | 7 cut(s) | 12, 408, 807, 1632, 2517, 2591, 3549 |
| MvnI | CGCG | 2 cut(s) | 486, 1881 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 15, 64, 527, 1290, 1352, 1874, 1883, 2967 |
| NcoI | CCATGG | 2 cut(s) | 622, 3591 |
| NdeI | CATATG | 1 cut(s) | 1417 |
| NmuCI | GTSAC | 2 cut(s) | 553, 1487 |
| NruI | TCGCGA | 1 cut(s) | 1881 |
| NspI | RCATGY | 8 cut(s) | 577, 1160, 1902, 1963, 2853, 2903, 3018, 3075 |
| PaeI | GCATGC | 3 cut(s) | 1160, 1902, 2853 |
| PagI | TCATGA | 1 cut(s) | 1846 |
| PasI | CCCWGGG | 1 cut(s) | 11 |
| PceI | AGGCCT | 2 cut(s) | 1630, 2706 |
| PciI | ACATGT | 2 cut(s) | 1959, 2899 |
| PciSI | GCTCTTC | 2 cut(s) | 3186, 3630 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2469 |
| PctI | GAATGC | 4 cut(s) | 1408, 1635, 3514, 3565 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1036, 1324, 3295 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2328 |
| PfoI | TCCNGGA | 1 cut(s) | 805 |
| PleI | GAGTC | 7 cut(s) | 433, 853, 1049, 1606, 1992, 2362, 3191 |
| PpsI | GAGTC | 7 cut(s) | 433, 853, 1049, 1606, 1992, 2362, 3191 |
| PpuMI | RGGWCCY | 1 cut(s) | 3586 |
| PscI | ACATGT | 2 cut(s) | 1959, 2899 |
| PshBI | ATTAAT | 3 cut(s) | 1143, 2676, 3660 |
| Psp124BI | GAGCTC | 1 cut(s) | 341 |
| Psp1406I | AACGTT | 1 cut(s) | 673 |
| Psp5II | RGGWCCY | 1 cut(s) | 3586 |
| Psp6I | CCWGG | 7 cut(s) | 10, 406, 805, 1630, 2515, 2589, 3547 |
| PspFI | CCCAGC | 4 cut(s) | 1331, 1517, 3223, 3465 |
| PspGI | CCWGG | 7 cut(s) | 10, 406, 805, 1630, 2515, 2589, 3547 |
| PspOMI | GGGCCC | 1 cut(s) | 2318 |
| PspPPI | RGGWCCY | 1 cut(s) | 3586 |
| PstI | CTGCAG | 3 cut(s) | 2619, 2782, 2991 |
| PsuI | RGATCY | 3 cut(s) | 2650, 3227, 3673 |
| PvuII | CAGCTG | 2 cut(s) | 917, 1981 |
| RruI | TCGCGA | 1 cut(s) | 1881 |
| RsaI | GTAC | 8 cut(s) | 115, 163, 493, 862, 873, 997, 2234, 2545 |
| RsaNI | GTAC | 8 cut(s) | 114, 162, 492, 861, 872, 996, 2233, 2544 |
| RseI | CAYNNNNRTG | 4 cut(s) | 2466, 2487, 2502, 3013 |
| SacI | GAGCTC | 1 cut(s) | 341 |
| SapI | GCTCTTC | 2 cut(s) | 3186, 3630 |
| SaqAI | TTAA | 8 cut(s) | 5, 93, 794, 1005, 1143, 2106, 2676, 3660 |
| ScaI | AGTACT | 3 cut(s) | 873, 997, 2545 |
| SchI | GAGTC | 7 cut(s) | 433, 854, 1049, 1606, 1993, 2363, 3191 |
| ScrFI | CCNGG | 7 cut(s) | 12, 408, 807, 1632, 2517, 2591, 3549 |
| SduI | GDGCHC | 5 cut(s) | 90, 341, 1027, 1348, 2322 |
| SexAI | ACCWGGT | 1 cut(s) | 3547 |
| SfaNI | GCATC | 6 cut(s) | 247, 319, 1690, 1873, 2527, 3070 |
| SfcI | CTRYAG | 7 cut(s) | 840, 1179, 1503, 2264, 2615, 2778, 2987 |
| SinI | GGWCC | 7 cut(s) | 172, 1335, 1607, 1907, 2812, 3367, 3586 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 2466, 2487, 2502, 3013 |
| SmlI | CTYRAG | 4 cut(s) | 538, 875, 3301, 3763 |
| SmoI | CTYRAG | 4 cut(s) | 538, 875, 3301, 3763 |
| SpeI | ACTAGT | 1 cut(s) | 2800 |
| SphI | GCATGC | 3 cut(s) | 1160, 1902, 2853 |
| SseBI | AGGCCT | 2 cut(s) | 1630, 2706 |
| SstI | GAGCTC | 1 cut(s) | 341 |
| StuI | AGGCCT | 2 cut(s) | 1630, 2706 |
| StyD4I | CCNGG | 7 cut(s) | 10, 406, 805, 1630, 2515, 2589, 3547 |
| StyI | CCWWGG | 5 cut(s) | 273, 462, 622, 2531, 3591 |
| TaiI | ACGT | 1 cut(s) | 676 |
| TaqI | TCGA | 7 cut(s) | 1030, 2120, 2357, 2449, 2582, 2941, 3629 |
| TatI | WGTACW | 6 cut(s) | 113, 161, 871, 995, 2232, 2543 |
| TauI | GCSGC | 2 cut(s) | 1133, 1978 |
| Tru1I | TTAA | 8 cut(s) | 5, 93, 794, 1005, 1143, 2106, 2676, 3660 |
| Tru9I | TTAA | 8 cut(s) | 5, 93, 794, 1005, 1143, 2106, 2676, 3660 |
| TscAI | CASTG | 6 cut(s) | 77, 693, 1199, 1492, 2462, 3507 |
| TseFI | GTSAC | 2 cut(s) | 553, 1487 |
| TseI | GCWGC | 8 cut(s) | 38, 292, 1102, 1865, 1978, 2048, 2614, 3610 |
| Tsp45I | GTSAC | 2 cut(s) | 553, 1487 |
| TspGWI | ACGGA | 5 cut(s) | 202, 444, 2478, 2873, 3615 |
| TspRI | CASTG | 6 cut(s) | 77, 693, 1199, 1492, 2462, 3507 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2328 |
| VpaK11BI | GGWCC | 7 cut(s) | 172, 1335, 1607, 1907, 2812, 3367, 3586 |
| VspI | ATTAAT | 3 cut(s) | 1143, 2676, 3660 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1032 |
| XapI | RAATTY | 3 cut(s) | 2144, 2474, 3625 |
| XceI | RCATGY | 8 cut(s) | 577, 1160, 1902, 1963, 2853, 2903, 3018, 3075 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 310, 1133, 3725 |
| XmaJI | CCTAGG | 1 cut(s) | 2531 |
| XmiI | GTMKAC | 1 cut(s) | 1053 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1036, 1324, 3295 |
| ZrmI | AGTACT | 3 cut(s) | 873, 997, 2545 |