Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004462

Physical Location & Seq

Genomic Coordinates Reverse (-)

21933756 .. 21941963

Gene Structure 8208 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0213700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTTCCTTAGTGCATTAATAATAGATGTTGCTGGGCATGCTGGAAAGCTAGATGCTGCCTTTGAAATCATACAGGAAGCCAGAAATCGAGGAATACAAGTTGGAACTGTATCATATAGCTCATTGACGGGCGCATGTAGCAATGCCAAAAATTGGCAGAAAGCACTGGAGCTCTATGAGGATCTTAAGTCAGCTAAAATTGAGCAGACTGTTTCAACTGTCAATGCTTTGATTACTGCCCTATGTGATGGGGATCAACTACAGAAGGCTATGGAAGTTCTGTCGGAAATGAAGAGTATAGGACTGCGTCCAAACAGTATAACATACTCCATACTTGTAGTGGCAAGTGAAAAGAAGGATGATCTAGAAGCTGGCCTGCTGCTCCTTTCTCAAGCTGAAAAGGATAAAGTTGTTCCAAACCTTGTCATGTGTAGATGCATTATAGGGAAAGAGAAAGGGAAAGGGAACAAAGGGAAAGTGAAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008134 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

162

Amino Acids

17.43

Weight (kDa)

8.3

Isoelectric Point (pI)

22.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	7 - 81	4.4e-06	Fungal tetratrico peptide repeats
PPR_long	PF17177	11 - 119	8e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	23 - 81	5.3e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	35 - 83	1.4e-07	PPR repeat family
PPR_3	PF13812	58 - 113	2.5e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	70 - 113	3.4e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44460
fragaria_vesca	FvH4_3g24780 FvH4_3g24800
malus_domestica	MD03G1143300.v1.1
prunus_persica	Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0044361 RchiOBHm_Chr5g0044371
rosa_laevigata	RLG00000034268 RLG00000034269
rosa_multiflora	Rmu_sc0004741.1_g000007 Rmu_sc0004741.1_g000008
rosa_roxburghii	Rroxscaffold_1G00036580 Rroxscaffold_1G00036600
rosa_rugosa	Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700
rosa_samantha	Rh5AG297900 Rh5AG298100 Rh5BG305300 Rh5BG305500 Rh5CG332300 Rh5CG332500 Rh5DG314500 Rh5DG314700
rosa_wichuraiana	Rw5G027580 Rw5G027590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	153
AclWI	GGATC	2 cut(s)	189, 261
AfiI	CCNNNNNNNGG	1 cut(s)	153
AflII	CTTAAG	1 cut(s)	185
AgsI	TTSAA	2 cut(s)	65, 216
AluBI	AGCT	6 cut(s)	49, 120, 172, 194, 371, 395
AluI	AGCT	6 cut(s)	49, 120, 172, 194, 371, 395
Alw21I	GWGCWC	1 cut(s)	174
AlwI	GGATC	2 cut(s)	189, 261
AoxI	GGCC	1 cut(s)	373
ApeKI	GCWGC	2 cut(s)	56, 379
AseI	ATTAAT	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	43, 366
BccI	CCATC	1 cut(s)	242
BfaI	CTAG	2 cut(s)	50, 365
BfmI	CTRYAG	1 cut(s)	260
BfrI	CTTAAG	1 cut(s)	185
BisI	GCNGC	2 cut(s)	57, 380
BlsI	GCNGC	2 cut(s)	58, 381
BmsI	GCATC	2 cut(s)	43, 425
BpmI	CTGGAG	1 cut(s)	188
BpuEI	CTTGAG	1 cut(s)	375
BsaBI	GATNNNNATC	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse1I	ACTGG	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	148
Bse8I	GATNNNNATC	1 cut(s)	252
BseGI	GGATG	1 cut(s)	364
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMI	GCAATG	1 cut(s)	148
BseNI	ACTGG	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	43, 366
BseYI	CCCAGC	1 cut(s)	32
BshFI	GGCC	1 cut(s)	375
BsiHKAI	GWGCWC	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	153
BsnI	GGCC	1 cut(s)	375
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	3 cut(s)	181, 253, 361
BspANI	GGCC	1 cut(s)	375
BspPI	GGATC	2 cut(s)	189, 261
BspTI	CTTAAG	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	171
BssMI	GATC	3 cut(s)	181, 253, 361
Bst4CI	ACNGT	4 cut(s)	109, 211, 220, 317
Bst6I	CTCTTC	1 cut(s)	287
BstAFI	CTTAAG	1 cut(s)	185
BstC8I	GCNNGC	3 cut(s)	39, 373, 377
BstDEI	CTNAG	1 cut(s)	8
BstF5I	GGATG	1 cut(s)	364
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	3 cut(s)	184, 256, 364
BstMBI	GATC	3 cut(s)	181, 253, 361
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 138
BstNSI	RCATGY	2 cut(s)	41, 138
BstSFI	CTRYAG	1 cut(s)	260
BstV1I	GCAGC	2 cut(s)	43, 366
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	364
BtsIMutI	CAGTG	1 cut(s)	164
Cac8I	GCNNGC	3 cut(s)	39, 373, 377
CfoI	GCGC	1 cut(s)	134
CseI	GACGC	1 cut(s)	296
CviAII	CATG	3 cut(s)	38, 135, 427
CviJI	RGCY	9 cut(s)	49, 80, 120, 172, 194, 269, 371, 375, 395
CviKI_1	RGCY	9 cut(s)	49, 80, 120, 172, 194, 269, 371, 375, 395
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	3 cut(s)	183, 255, 363
DpnII	GATC	3 cut(s)	181, 253, 361
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
Ecl136II	GAGCTC	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	172
EcoICRI	GAGCTC	1 cut(s)	172
EcoT22I	ATGCAT	1 cut(s)	440
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	3 cut(s)	41, 138, 430
FatI	CATG	3 cut(s)	37, 134, 426
Fnu4HI	GCNGC	2 cut(s)	57, 380
FokI	GGATG	1 cut(s)	371
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	2 cut(s)	57, 380
FspBI	CTAG	2 cut(s)	50, 365
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	2 cut(s)	57, 380
GsaI	CCCAGC	1 cut(s)	36
GsuI	CTGGAG	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	375
HgaI	GACGC	1 cut(s)	296
HhaI	GCGC	1 cut(s)	134
Hin1II	CATG	3 cut(s)	41, 138, 430
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	1 cut(s)	365
HpyAV	CCTTC	2 cut(s)	259, 349
HpyCH4III	ACNGT	4 cut(s)	109, 211, 220, 317
HpyCH4V	TGCA	2 cut(s)	14, 438
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 138
HpyF3I	CTNAG	1 cut(s)	8
Hsp92II	CATG	3 cut(s)	41, 138, 430
HspAI	GCGC	1 cut(s)	132
Kzo9I	GATC	3 cut(s)	181, 253, 361
LmnI	GCTCC	2 cut(s)	169, 387
LpnPI	CCDG	7 cut(s)	18, 27, 59, 94, 152, 357, 389
Lsp1109I	GCAGC	2 cut(s)	43, 366
LweI	GCATC	2 cut(s)	43, 425
MaeI	CTAG	2 cut(s)	50, 365
MalI	GATC	3 cut(s)	183, 255, 363
MboI	GATC	3 cut(s)	181, 253, 361
MboII	GAAGA	1 cut(s)	304
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	2 cut(s)	151, 198
MmeI	TCCRAC	2 cut(s)	82, 264
MnlI	CCTC	2 cut(s)	83, 172
Mph1103I	ATGCAT	1 cut(s)	440
MseI	TTAA	2 cut(s)	17, 186
MspCI	CTTAAG	1 cut(s)	185
MwoI	GCNNNNNNNGC	2 cut(s)	38, 138
NdeII	GATC	3 cut(s)	181, 253, 361
NlaIII	CATG	3 cut(s)	41, 138, 430
NsiI	ATGCAT	1 cut(s)	440
NspI	RCATGY	2 cut(s)	41, 138
PaeI	GCATGC	1 cut(s)	41
PflFI	GACNNNGTC	1 cut(s)	306
PflMI	CCANNNNNTGG	1 cut(s)	153
PkrI	GCNGC	2 cut(s)	58, 381
PshBI	ATTAAT	1 cut(s)	17
Psp124BI	GAGCTC	1 cut(s)	174
PspFI	CCCAGC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	181
PsyI	GACNNNGTC	1 cut(s)	306
SacI	GAGCTC	1 cut(s)	174
SaqAI	TTAA	2 cut(s)	17, 186
SatI	GCNGC	2 cut(s)	57, 380
Sau3AI	GATC	3 cut(s)	181, 253, 361
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	7 cut(s)	51, 122, 174, 196, 373, 397, 423
SfaNI	GCATC	2 cut(s)	43, 425
SfcI	CTRYAG	1 cut(s)	260
SmlI	CTYRAG	2 cut(s)	185, 390
SmoI	CTYRAG	2 cut(s)	185, 390
SphI	GCATGC	1 cut(s)	41
Sse9I	AATT	2 cut(s)	151, 198
SspMI	CTAG	2 cut(s)	50, 365
SstI	GAGCTC	1 cut(s)	174
TaaI	ACNGT	4 cut(s)	109, 211, 220, 317
TaqI	TCGA	1 cut(s)	88
TasI	AATT	2 cut(s)	151, 198
Tru1I	TTAA	2 cut(s)	17, 186
Tru9I	TTAA	2 cut(s)	17, 186
TscAI	CASTG	1 cut(s)	171
TseI	GCWGC	2 cut(s)	56, 379
TspDTI	ATGAA	1 cut(s)	305
TspRI	CASTG	1 cut(s)	171
Tth111I	GACNNNGTC	1 cut(s)	306
Van91I	CCANNNNNTGG	1 cut(s)	153
Vha464I	CTTAAG	1 cut(s)	185
VspI	ATTAAT	1 cut(s)	17
XbaI	TCTAGA	1 cut(s)	364
XceI	RCATGY	2 cut(s)	41, 138
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337
XspI	CTAG	2 cut(s)	50, 365
Zsp2I	ATGCAT	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.