Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004462

Physical Location & Seq

Genomic Coordinates Forward (+)

15370226 .. 15374213

Gene Structure 3988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1143300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGTGGTTTCTGAAGAGTCTGGAAGCGATGGCTATGATCACAATGGTAATGACAACATGGAACTTGATCTGCCGCTAGAACAACAAGAAGGATTGTCGAAAGACAGCTCTCACCCTTCAATGAATAGTACTAAACACAACTCCATATTCTCACTCACTCTTGATGAAATTCAATGCAAGAGTGGGAGGAATTTCGGGTCCATGAACATGGACGAGTTCCTTGCCAACATTTGGAGCGTCGAAGAAGACCAAGAACCAAGCAAAGGTGATCAAGATTCTGCCAATGAGAAGGACACAACTTTCCAGCCCAAGACTTTGTCTCGACAGGGCTCGTTCTGTATTCCCACCCCGCTCTGCAAGAAAACTGTAGATGAGGTGTGGTCTGAAATTGACAAAAGTCGACCACGATTCCATGACCCCAGCAGCAGCATTGGCAGTTCTGGTCCTTCTGGACCTCCGCAGCGCCAGCAAACAATCGGAGAAATTACCCTAGAAGATTTCCTTGTAAAAGCCGGGGTTGTTCAAGAGTCGCCGTCCAAGTCCAAGCCTTCTGAGAAGAGAGTGGCAAGCACCCCAATTCAACTGCATTGTGGTAACAGATTTGATGCAGATTTTGGAATTGGGGGGCAAGTGTTTGCCTCAGCATTTTTAAACCCCCAAAACGCTATGGAAAACGAATTATTTTCCGGAAATGGATATCCAATTGGTACTACATACCCAATGTTTGGTACACAGAGCATGGGAGAATCATTTTGTCTTAGTGACATTGAGAAATGTCATAGTTTGCCAGAATCGAGTAGCGGGGGTGGGGCAAAGAACAAGAAGAGGATCATAGACGGTCCACCAGAGGTAGTAGTGGAGCGGAGGCAACGCAGGATGATCAAGAATCGAGAGTCTGCGGCTAGGTCTCGTGCCAGGAAACAGGCATACACTGTGGAATTGGAAGCTGAGTTGAATCAACTTAAAGAGGAGAACACAAGGCTGAAGCAAAGTGTGGACGAGTCTGAAAAAAGGCGCAAGCAAGAGGTATTGAGGAGGAAGGAGATTAAACAATCCACAAGAGCACAAAAGTTGGCAGAAAAGTTGAGGACAATGAGGAGGGCTGTAAGCTTGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008134 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

373

Amino Acids

41.5

Weight (kDa)

6.17

Isoelectric Point (pI)

60.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	287 - 337	3.2e-10	Basic region leucine zipper
bZIP_1	PF00170	288 - 340	1.1e-12	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44460
fragaria_vesca	FvH4_3g24780 FvH4_3g24800
malus_domestica	MD03G1143300.v1.1
prunus_persica	Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0044361 RchiOBHm_Chr5g0044371
rosa_laevigata	RLG00000034268 RLG00000034269
rosa_multiflora	Rmu_sc0004741.1_g000007 Rmu_sc0004741.1_g000008
rosa_roxburghii	Rroxscaffold_1G00036580 Rroxscaffold_1G00036600
rosa_rugosa	Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700
rosa_samantha	Rh5AG297900 Rh5AG298100 Rh5BG305300 Rh5BG305500 Rh5CG332300 Rh5CG332500 Rh5DG314500 Rh5DG314700
rosa_wichuraiana	Rw5G027580 Rw5G027590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	231, 725
AccBSI	CCGCTC	2 cut(s)	352, 862
AccI	GTMKAC	1 cut(s)	400
AccIII	TCCGGA	1 cut(s)	686
AciI	CCGC	6 cut(s)	74, 350, 458, 801, 862, 899
AclWI	GGATC	1 cut(s)	836
AcsI	RAATTY	2 cut(s)	168, 190
AcuI	CTGAAG	2 cut(s)	33, 1004
AfaI	GTAC	3 cut(s)	130, 709, 730
AfiI	CCNNNNNNNGG	3 cut(s)	231, 263, 725
AgsI	TTSAA	5 cut(s)	120, 173, 524, 581, 955
AjnI	CCWGG	1 cut(s)	914
AluBI	AGCT	3 cut(s)	108, 947, 1110
AluI	AGCT	3 cut(s)	108, 947, 1110
Alw21I	GWGCWC	1 cut(s)	1066
Alw26I	GTCTC	2 cut(s)	324, 912
AlwI	GGATC	1 cut(s)	836
Aor13HI	TCCGGA	1 cut(s)	686
ApeKI	GCWGC	3 cut(s)	423, 426, 460
ApoI	RAATTY	2 cut(s)	168, 190
AspLEI	GCGC	2 cut(s)	465, 1017
AspS9I	GGNCC	4 cut(s)	198, 443, 452, 839
AsuC2I	CCSGG	1 cut(s)	514
AsuHPI	GGTGA	2 cut(s)	104, 278
AvaII	GGWCC	4 cut(s)	198, 443, 452, 839
BanII	GRGCYC	1 cut(s)	332
BauI	CACGAG	1 cut(s)	909
BbsI	GAAGAC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	1066
BbvCI	CCTCAGC	1 cut(s)	640
BbvI	GCAGC	3 cut(s)	435, 438, 472
BccI	CCATC	1 cut(s)	23
BceAI	ACGGC	2 cut(s)	517, 1099
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BciT130I	CCWGG	1 cut(s)	916
BclI	TGATCA	3 cut(s)	37, 268, 879
BcnI	CCSGG	1 cut(s)	514
BcoDI	GTCTC	2 cut(s)	324, 912
BfaI	CTAG	3 cut(s)	77, 491, 903
BfmI	CTRYAG	1 cut(s)	366
BfoI	RGCGCY	1 cut(s)	466
BisI	GCNGC	5 cut(s)	74, 424, 427, 461, 900
BlsI	GCNGC	5 cut(s)	75, 425, 428, 462, 901
BmcAI	AGTACT	1 cut(s)	130
Bme1390I	CCNGG	2 cut(s)	514, 916
Bme18I	GGWCC	4 cut(s)	198, 443, 452, 839
BmgT120I	GGNCC	4 cut(s)	198, 443, 452, 839
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	2 cut(s)	514, 916
BmsI	GCATC	1 cut(s)	595
BoxI	GACNNNNGTC	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	252
Bpu10I	CCTNAGC	1 cut(s)	640
BpuMI	CCSGG	1 cut(s)	514
BsaI	GGTCTC	1 cut(s)	912
BsaJI	CCNNGG	1 cut(s)	513
BsaWI	WCCGGW	1 cut(s)	686
Bsc4I	CCNNNNNNNGG	3 cut(s)	231, 263, 725
BseAI	TCCGGA	1 cut(s)	686
BseBI	CCWGG	1 cut(s)	916
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	1 cut(s)	882
BseLI	CCNNNNNNNGG	3 cut(s)	231, 263, 725
BseMII	CTCAG	3 cut(s)	543, 654, 939
BseRI	GAGGAG	3 cut(s)	983, 1048, 1111
BseXI	GCAGC	3 cut(s)	435, 438, 472
BseYI	CCCAGC	1 cut(s)	419
BsiHKAI	GWGCWC	1 cut(s)	1066
BsiSI	CCGG	2 cut(s)	513, 687
BslI	CCNNNNNNNGG	3 cut(s)	231, 263, 725
BsmAI	GTCTC	2 cut(s)	324, 912
Bso31I	GGTCTC	1 cut(s)	912
Bsp1286I	GDGCHC	2 cut(s)	332, 1066
Bsp13I	TCCGGA	1 cut(s)	686
Bsp143I	GATC	5 cut(s)	37, 67, 268, 828, 879
BspACI	CCGC	6 cut(s)	74, 350, 458, 801, 862, 899
BspCNI	CTCAG	3 cut(s)	544, 653, 940
BspEI	TCCGGA	1 cut(s)	686
BspLI	GGNNCC	1 cut(s)	199
BspPI	GGATC	1 cut(s)	836
BspTNI	GGTCTC	1 cut(s)	912
BsrBI	CCGCTC	2 cut(s)	352, 862
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	5 cut(s)	37, 67, 268, 828, 879
BssSI	CACGAG	1 cut(s)	909
Bst2BI	CACGAG	1 cut(s)	909
Bst2UI	CCWGG	1 cut(s)	916
Bst4CI	ACNGT	3 cut(s)	367, 839, 934
Bst6I	CTCTTC	3 cut(s)	9, 551, 818
BstC8I	GCNNGC	4 cut(s)	467, 568, 1019, 1112
BstDEI	CTNAG	4 cut(s)	552, 640, 758, 948
BstF5I	GGATG	1 cut(s)	882
BstH2I	RGCGCY	1 cut(s)	466
BstHHI	GCGC	2 cut(s)	465, 1017
BstKTI	GATC	5 cut(s)	40, 70, 271, 831, 882
BstMAI	GTCTC	2 cut(s)	324, 912
BstMBI	GATC	5 cut(s)	37, 67, 268, 828, 879
BstMWI	GCNNNNNNNGC	2 cut(s)	432, 466
BstNI	CCWGG	1 cut(s)	916
BstPAI	GACNNNNGTC	1 cut(s)	396
BstSCI	CCNGG	2 cut(s)	512, 914
BstSFI	CTRYAG	1 cut(s)	366
BstV1I	GCAGC	3 cut(s)	435, 438, 472
BstV2I	GAAGAC	1 cut(s)	252
BstXI	CCANNNNNNTGG	1 cut(s)	208
BtgZI	GCGATG	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	882
BtsIMutI	CAGTG	1 cut(s)	930
Cac8I	GCNNGC	4 cut(s)	467, 568, 1019, 1112
CfoI	GCGC	2 cut(s)	465, 1017
Cfr13I	GGNCC	4 cut(s)	198, 443, 452, 839
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	3 cut(s)	129, 708, 729
CviAII	CATG	5 cut(s)	58, 202, 208, 413, 739
CviQI	GTAC	3 cut(s)	129, 708, 729
DdeI	CTNAG	4 cut(s)	552, 640, 758, 948
DpnI	GATC	5 cut(s)	39, 69, 270, 830, 881
DpnII	GATC	5 cut(s)	37, 67, 268, 828, 879
DraI	TTTAAA	1 cut(s)	651
Eam1104I	CTCTTC	3 cut(s)	9, 551, 818
EarI	CTCTTC	3 cut(s)	9, 551, 818
Eco24I	GRGCYC	1 cut(s)	332
Eco31I	GGTCTC	1 cut(s)	912
Eco32I	GATATC	1 cut(s)	698
Eco47I	GGWCC	4 cut(s)	198, 443, 452, 839
Eco57I	CTGAAG	2 cut(s)	33, 1004
EcoRII	CCWGG	1 cut(s)	914
EcoRV	GATATC	1 cut(s)	698
EcoT38I	GRGCYC	1 cut(s)	332
FaeI	CATG	5 cut(s)	61, 205, 211, 416, 742
FalI	AAGNNNNNCTT	2 cut(s)	486, 518
FatI	CATG	5 cut(s)	57, 201, 207, 412, 738
FauI	CCCGC	2 cut(s)	357, 794
FbaI	TGATCA	3 cut(s)	37, 268, 879
FblI	GTMKAC	1 cut(s)	400
Fnu4HI	GCNGC	5 cut(s)	74, 424, 427, 461, 900
FokI	GGATG	1 cut(s)	889
FriOI	GRGCYC	1 cut(s)	332
Fsp4HI	GCNGC	5 cut(s)	74, 424, 427, 461, 900
FspBI	CTAG	3 cut(s)	77, 491, 903
GlaI	GCGC	2 cut(s)	464, 1016
GluI	GCNGC	5 cut(s)	74, 424, 427, 461, 900
GsaI	CCCAGC	1 cut(s)	423
HaeII	RGCGCY	1 cut(s)	466
HapII	CCGG	2 cut(s)	513, 687
HgaI	GACGC	1 cut(s)	226
HhaI	GCGC	2 cut(s)	465, 1017
Hin1II	CATG	5 cut(s)	61, 205, 211, 416, 742
Hin6I	GCGC	2 cut(s)	463, 1015
HinP1I	GCGC	2 cut(s)	463, 1015
HincII	GTYRAC	1 cut(s)	401
HindII	GTYRAC	1 cut(s)	401
HindIII	AAGCTT	1 cut(s)	1108
HpaII	CCGG	2 cut(s)	513, 687
HphI	GGTGA	2 cut(s)	104, 278
Hpy166II	GTNNAC	4 cut(s)	401, 731, 842, 997
Hpy188I	TCNGA	5 cut(s)	13, 385, 479, 553, 1006
Hpy188III	TCNNGA	9 cut(s)	21, 161, 272, 321, 450, 524, 687, 883, 890
Hpy8I	GTNNAC	4 cut(s)	401, 731, 842, 997
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	6 cut(s)	83, 126, 283, 456, 558, 1033
HpyCH4III	ACNGT	3 cut(s)	367, 839, 934
HpyCH4V	TGCA	4 cut(s)	177, 357, 586, 608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	432, 466
HpyF3I	CTNAG	4 cut(s)	552, 640, 758, 948
Hsp92II	CATG	5 cut(s)	61, 205, 211, 416, 742
HspAI	GCGC	2 cut(s)	463, 1015
Kpn2I	TCCGGA	1 cut(s)	686
Ksp22I	TGATCA	3 cut(s)	37, 268, 879
Kzo9I	GATC	5 cut(s)	37, 67, 268, 828, 879
LmnI	GCTCC	2 cut(s)	234, 859
Lsp1109I	GCAGC	3 cut(s)	435, 438, 472
LweI	GCATC	1 cut(s)	595
MaeI	CTAG	3 cut(s)	77, 491, 903
MaeIII	GTNAC	2 cut(s)	593, 761
MalI	GATC	5 cut(s)	39, 69, 270, 830, 881
MbiI	CCGCTC	2 cut(s)	352, 862
MboI	GATC	5 cut(s)	37, 67, 268, 828, 879
MboII	GAAGA	6 cut(s)	26, 254, 257, 506, 568, 835
MfeI	CAATTG	1 cut(s)	702
MhlI	GDGCHC	2 cut(s)	332, 1066
MluCI	AATT	9 cut(s)	168, 190, 387, 483, 576, 618, 677, 702, 938
MlyI	GAGTC	4 cut(s)	26, 536, 902, 1010
MroI	TCCGGA	1 cut(s)	686
MseI	TTAA	3 cut(s)	650, 963, 1047
MslI	CAYNNNNRTG	1 cut(s)	206
MspI	CCGG	2 cut(s)	513, 687
MspR9I	CCNGG	2 cut(s)	514, 916
MunI	CAATTG	1 cut(s)	702
MvaI	CCWGG	1 cut(s)	916
MwoI	GCNNNNNNNGC	2 cut(s)	432, 466
NciI	CCSGG	1 cut(s)	514
NdeII	GATC	5 cut(s)	37, 67, 268, 828, 879
NlaIII	CATG	5 cut(s)	61, 205, 211, 416, 742
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	1 cut(s)	761
PfeI	GAWTC	6 cut(s)	275, 408, 746, 791, 886, 955
PflFI	GACNNNGTC	1 cut(s)	316
PflMI	CCANNNNNTGG	2 cut(s)	231, 725
PkrI	GCNGC	5 cut(s)	75, 425, 428, 462, 901
PleI	GAGTC	4 cut(s)	25, 535, 901, 1009
PpsI	GAGTC	4 cut(s)	25, 535, 901, 1009
PshAI	GACNNNNGTC	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	914
PspFI	CCCAGC	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	914
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	4 cut(s)	198, 443, 452, 839
PsyI	GACNNNGTC	1 cut(s)	316
RsaI	GTAC	3 cut(s)	130, 709, 730
RsaNI	GTAC	3 cut(s)	129, 708, 729
RseI	CAYNNNNRTG	1 cut(s)	206
SalI	GTCGAC	1 cut(s)	399
SaqAI	TTAA	3 cut(s)	650, 963, 1047
SatI	GCNGC	5 cut(s)	74, 424, 427, 461, 900
Sau3AI	GATC	5 cut(s)	37, 67, 268, 828, 879
Sau96I	GGNCC	4 cut(s)	198, 443, 452, 839
ScaI	AGTACT	1 cut(s)	130
SchI	GAGTC	4 cut(s)	26, 536, 902, 1010
ScrFI	CCNGG	2 cut(s)	514, 916
SduI	GDGCHC	2 cut(s)	332, 1066
SetI	ASST	9 cut(s)	110, 268, 378, 457, 852, 908, 949, 1029, 1112
SfaNI	GCATC	1 cut(s)	595
SfcI	CTRYAG	1 cut(s)	366
SinI	GGWCC	4 cut(s)	198, 443, 452, 839
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	9 cut(s)	168, 190, 387, 483, 576, 618, 677, 702, 938
SsiI	CCGC	6 cut(s)	74, 350, 458, 801, 862, 899
SspMI	CTAG	3 cut(s)	77, 491, 903
StyD4I	CCNGG	2 cut(s)	512, 914
TaaI	ACNGT	3 cut(s)	367, 839, 934
TaqI	TCGA	6 cut(s)	98, 240, 322, 400, 794, 889
TasI	AATT	9 cut(s)	168, 190, 387, 483, 576, 618, 677, 702, 938
TatI	WGTACW	1 cut(s)	128
TauI	GCSGC	2 cut(s)	76, 902
TfiI	GAWTC	6 cut(s)	275, 408, 746, 791, 886, 955
Tru1I	TTAA	3 cut(s)	650, 963, 1047
Tru9I	TTAA	3 cut(s)	650, 963, 1047
TscAI	CASTG	1 cut(s)	937
TseFI	GTSAC	1 cut(s)	761
TseI	GCWGC	3 cut(s)	423, 426, 460
Tsp45I	GTSAC	1 cut(s)	761
TspDTI	ATGAA	3 cut(s)	137, 180, 218
TspRI	CASTG	1 cut(s)	937
Tth111I	GACNNNGTC	1 cut(s)	316
Van91I	CCANNNNNTGG	2 cut(s)	231, 725
VpaK11BI	GGWCC	4 cut(s)	198, 443, 452, 839
XapI	RAATTY	2 cut(s)	168, 190
XmiI	GTMKAC	1 cut(s)	400
XspI	CTAG	3 cut(s)	77, 491, 903
ZrmI	AGTACT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.