Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004462

Physical Location & Seq

Genomic Coordinates Forward (+)

17891439 .. 17892055

Gene Structure 617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g24780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGTGATGTCTGATGAATCTGGAGGCCTTGGCTATGACCAAAATGGGGATGGAAATGATGTTAAACCTCAACAAACACCACCACAGCACGAAAATGGGGAATCATCAAAACAGAATTCGATATTCTTGCTTACTCTTGATGAGATTCAAAGCAAGAGTGGGAAGAGTTTTGGGTCCATGAACATGGATGAATTCCTTGCCAACATATGGAGTGTCGATGAAAATCAACTTTGTGAAGAACAACCCAACCAAGGTGATCATGAGGACCCCTGCAGTAATGTGAAAGACACAATTTCAAAGCCGCTGGGATCTCTTTCGCGTCAAGGATCATACTGCATTCCTACCCCACTTTGCAAGAAAACTGTGGATGAGCCGATGAGGTCTGGTCAGAGATCGACAAAACTCAACCACCACCCCCGCTTACTGACCGGCACATATGGGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008134 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

149

Amino Acids

16.32

Weight (kDa)

4.83

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44460
fragaria_vesca	FvH4_3g24780 FvH4_3g24800
malus_domestica	MD03G1143300.v1.1
prunus_persica	Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0044361 RchiOBHm_Chr5g0044371
rosa_laevigata	RLG00000034268 RLG00000034269
rosa_multiflora	Rmu_sc0004741.1_g000007 Rmu_sc0004741.1_g000008
rosa_roxburghii	Rroxscaffold_1G00036580 Rroxscaffold_1G00036600
rosa_rugosa	Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700
rosa_samantha	Rh5AG297900 Rh5AG298100 Rh5BG305300 Rh5BG305500 Rh5CG332300 Rh5CG332500 Rh5DG314500 Rh5DG314700
rosa_wichuraiana	Rw5G027580 Rw5G027590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	207
AccII	CGCG	1 cut(s)	319
AciI	CCGC	2 cut(s)	302, 418
AclWI	GGATC	2 cut(s)	316, 334
AcsI	RAATTY	2 cut(s)	115, 191
AfiI	CCNNNNNNNGG	3 cut(s)	46, 207, 251
AgsI	TTSAA	2 cut(s)	149, 297
AlwI	GGATC	2 cut(s)	316, 334
AoxI	GGCC	1 cut(s)	25
ApoI	RAATTY	2 cut(s)	115, 191
AspS9I	GGNCC	2 cut(s)	174, 265
AsuHPI	GGTGA	2 cut(s)	16, 266
AvaII	GGWCC	2 cut(s)	174, 265
BccI	CCATC	1 cut(s)	44
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BclI	TGATCA	1 cut(s)	256
BfmI	CTRYAG	1 cut(s)	271
BisI	GCNGC	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	303
Bme18I	GGWCC	2 cut(s)	174, 265
BmgT120I	GGNCC	2 cut(s)	174, 265
BmiI	GGNNCC	2 cut(s)	175, 267
BpmI	CTGGAG	1 cut(s)	42
BsaBI	GATNNNNATC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	28, 250
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 207, 251
Bse118I	RCCGGY	1 cut(s)	428
Bse8I	GATNNNNATC	1 cut(s)	222
BseDI	CCNNGG	2 cut(s)	28, 250
BseGI	GGATG	3 cut(s)	55, 193, 373
BseJI	GATNNNNATC	1 cut(s)	222
BseLI	CCNNNNNNNGG	3 cut(s)	46, 207, 251
BseYI	CCCAGC	1 cut(s)	304
Bsh1236I	CGCG	1 cut(s)	319
BshFI	GGCC	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	429
BslI	CCNNNNNNNGG	3 cut(s)	46, 207, 251
BsmI	GAATGC	1 cut(s)	336
BsnI	GGCC	1 cut(s)	27
Bsp143I	GATC	4 cut(s)	256, 308, 326, 392
BspACI	CCGC	2 cut(s)	302, 418
BspANI	GGCC	1 cut(s)	27
BspFNI	CGCG	1 cut(s)	319
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	2 cut(s)	175, 267
BspMAI	CTGCAG	1 cut(s)	275
BspPI	GGATC	2 cut(s)	316, 334
BsrFI	RCCGGY	1 cut(s)	428
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	2 cut(s)	28, 250
BssMI	GATC	4 cut(s)	256, 308, 326, 392
BssT1I	CCWWGG	2 cut(s)	28, 250
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	1 cut(s)	158
BstF5I	GGATG	3 cut(s)	55, 193, 373
BstFNI	CGCG	1 cut(s)	319
BstKTI	GATC	4 cut(s)	259, 311, 329, 395
BstMBI	GATC	4 cut(s)	256, 308, 326, 392
BstSFI	CTRYAG	1 cut(s)	271
BstUI	CGCG	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	308
BstXI	CCANNNNNNTGG	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	308
BsuRI	GGCC	1 cut(s)	27
BtsCI	GGATG	3 cut(s)	55, 193, 373
CciI	TCATGA	1 cut(s)	259
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	2 cut(s)	174, 265
CseI	GACGC	1 cut(s)	308
CviAII	CATG	3 cut(s)	178, 184, 260
CviJI	RGCY	4 cut(s)	27, 33, 301, 373
CviKI_1	RGCY	4 cut(s)	27, 33, 301, 373
DpnI	GATC	4 cut(s)	258, 310, 328, 394
DpnII	GATC	4 cut(s)	256, 308, 326, 392
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco130I	CCWWGG	2 cut(s)	28, 250
Eco147I	AGGCCT	1 cut(s)	27
Eco47I	GGWCC	2 cut(s)	174, 265
EcoO109I	RGGNCCY	1 cut(s)	265
EcoRI	GAATTC	2 cut(s)	115, 191
EcoT14I	CCWWGG	2 cut(s)	28, 250
ErhI	CCWWGG	2 cut(s)	28, 250
FaeI	CATG	3 cut(s)	181, 187, 263
FaiI	YATR	9 cut(s)	36, 179, 185, 206, 208, 261, 331, 436, 438
FatI	CATG	3 cut(s)	177, 183, 259
FauI	CCCGC	1 cut(s)	425
FauNDI	CATATG	2 cut(s)	206, 436
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	302
FokI	GGATG	3 cut(s)	62, 200, 380
Fsp4HI	GCNGC	1 cut(s)	302
GluI	GCNGC	1 cut(s)	302
GsaI	CCCAGC	1 cut(s)	308
GsuI	CTGGAG	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	1 cut(s)	429
HgaI	GACGC	1 cut(s)	308
Hin1II	CATG	3 cut(s)	181, 187, 263
HinfI	GANTC	3 cut(s)	17, 101, 145
HpaII	CCGG	1 cut(s)	429
HphI	GGTGA	2 cut(s)	16, 266
Hpy188I	TCNGA	2 cut(s)	13, 390
Hpy188III	TCNNGA	3 cut(s)	21, 137, 260
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4V	TGCA	3 cut(s)	273, 336, 354
Hsp92II	CATG	3 cut(s)	181, 187, 263
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	4 cut(s)	256, 308, 326, 392
LpnPI	CCDG	5 cut(s)	6, 283, 290, 369, 442
MalI	GATC	4 cut(s)	258, 310, 328, 394
MboI	GATC	4 cut(s)	256, 308, 326, 392
MboII	GAAGA	2 cut(s)	175, 248
MflI	RGATCY	1 cut(s)	308
MluCI	AATT	3 cut(s)	115, 191, 291
MnlI	CCTC	4 cut(s)	17, 78, 256, 372
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	2 cut(s)	93, 182
MspA1I	CMGCKG	1 cut(s)	304
MspI	CCGG	1 cut(s)	429
Mva1269I	GAATGC	1 cut(s)	336
MvnI	CGCG	1 cut(s)	319
NdeI	CATATG	2 cut(s)	206, 436
NdeII	GATC	4 cut(s)	256, 308, 326, 392
NlaIII	CATG	3 cut(s)	181, 187, 263
NlaIV	GGNNCC	2 cut(s)	175, 267
PagI	TCATGA	1 cut(s)	259
PceI	AGGCCT	1 cut(s)	27
PctI	GAATGC	1 cut(s)	336
PfeI	GAWTC	3 cut(s)	17, 101, 145
PflMI	CCANNNNNTGG	1 cut(s)	207
PkrI	GCNGC	1 cut(s)	303
PpuMI	RGGWCCY	1 cut(s)	265
Psp5II	RGGWCCY	1 cut(s)	265
PspFI	CCCAGC	1 cut(s)	304
PspN4I	GGNNCC	2 cut(s)	175, 267
PspPI	GGNCC	2 cut(s)	174, 265
PspPPI	RGGWCCY	1 cut(s)	265
PstI	CTGCAG	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	308
RseI	CAYNNNNRTG	2 cut(s)	93, 182
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	1 cut(s)	302
Sau3AI	GATC	4 cut(s)	256, 308, 326, 392
Sau96I	GGNCC	2 cut(s)	174, 265
SetI	ASST	3 cut(s)	70, 256, 383
SfcI	CTRYAG	1 cut(s)	271
SinI	GGWCC	2 cut(s)	174, 265
SmiMI	CAYNNNNRTG	2 cut(s)	93, 182
Sse9I	AATT	3 cut(s)	115, 191, 291
SseBI	AGGCCT	1 cut(s)	27
SsiI	CCGC	2 cut(s)	302, 418
StuI	AGGCCT	1 cut(s)	27
StyI	CCWWGG	2 cut(s)	28, 250
TaaI	ACNGT	1 cut(s)	364
TaqI	TCGA	3 cut(s)	119, 216, 395
TasI	AATT	3 cut(s)	115, 191, 291
TauI	GCSGC	1 cut(s)	304
TfiI	GAWTC	3 cut(s)	17, 101, 145
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TspDTI	ATGAA	4 cut(s)	30, 194, 204, 234
Van91I	CCANNNNNTGG	1 cut(s)	207
VpaK11BI	GGWCC	2 cut(s)	174, 265
XapI	RAATTY	2 cut(s)	115, 191
XcmI	CCANNNNNNNNNTGG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.