Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004462

Physical Location & Seq

Genomic Coordinates Forward (+)

17900383 .. 17901432

Gene Structure 1050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g24800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGTAGCTTCTGACGAACCTGGAGGCCTTGGATATGACCCAAATGGTGATGGAAATGATGCTAAACCTCAACCATCACCATCTCAGCACCAAAATGGGGAATCTTCAAAACAGAACTCGATATTCTCGCTTACTCTTGATGAAATTCAAAGCAAGAGTGGGAAGAGTTTTGGGTCCATGAATATGGATGAATTCCTTGCCAACATATGGAGTGCTGATGAAAACCAAGTTTCTTCAGAACAACCCAACCAAGGTGATCAGGAAAACCCTGCCAATGGGAAAGATACAACTTCAAATCCAGCCTCTCTTTCACGGCAAGGATCATTCTCCATTCCTACCCCACTCTGCAAGAAAACTGTGGAAGAGGTATGGTCAGAGATCGACAAAACTCGACCACCACCCCCGCCTGACGACATGAGTAATGGAGAACATCCCCAACGCCAATCAACCATTGGAGAAATAACCTTGGAAGATTTCCTAGTAAAAGCTGGTGTAGTTCAAGAATCACATTCTCAGAACCGAATGGAAAGTGACCCAATTCATCCACAAGGTGGTGATGCCAACAATTCTAATATGGCAAGTTGCAGTAGCATGTATGGGGGTACAAGTTCTGAAATGGGGAATAATATGATTGGTTCAGGATATTTGAATCCCCAAAATGCTATGCCAAACAATCTATCCGGAAATGAATATGCGATTGCTGGATATCCAATTTTTGGACAGGCTAAAATGATTGTGGGAAATGCATCTTTTGGTACCAATAGTGAAATTGAGAAATGTCTAAGTTTGCCTGAATCTAGTGGGACAAAGAACAAGAAGAGGATAATTGATGGTCCACTAGAGGTAGTAGTGGAGCGCAGGCAACGAAGGATGATAAAAAATCGAGAGTCAGCAGCTCGGTCTCGTGCAAGGAAACAGGATCAAATCATTCATTGTCTGCATGGCATTTCAAAGATCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008134 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

321

Amino Acids

34.65

Weight (kDa)

5.18

Isoelectric Point (pI)

54.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	286 - 309	4.9e-06	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44460
fragaria_vesca	FvH4_3g24780 FvH4_3g24800
malus_domestica	MD03G1143300.v1.1
prunus_persica	Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0044361 RchiOBHm_Chr5g0044371
rosa_laevigata	RLG00000034268 RLG00000034269
rosa_multiflora	Rmu_sc0004741.1_g000007 Rmu_sc0004741.1_g000008
rosa_roxburghii	Rroxscaffold_1G00036580 Rroxscaffold_1G00036600
rosa_rugosa	Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700
rosa_samantha	Rh5AG297900 Rh5AG298100 Rh5BG305300 Rh5BG305500 Rh5CG332300 Rh5CG332500 Rh5DG314500 Rh5DG314700
rosa_wichuraiana	Rw5G027580 Rw5G027590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	755
AccB1I	GGYRCC	1 cut(s)	755
AccB7I	CCANNNNNTGG	3 cut(s)	207, 551, 716
AccIII	TCCGGA	1 cut(s)	680
AciI	CCGC	1 cut(s)	404
AclWI	GGATC	2 cut(s)	328, 927
AcsI	RAATTY	2 cut(s)	144, 191
AcuI	CTGAAG	1 cut(s)	219
AdeI	CACNNNGTG	1 cut(s)	551
AfaI	GTAC	2 cut(s)	604, 757
AfiI	CCNNNNNNNGG	6 cut(s)	97, 207, 251, 275, 551, 716
AgsI	TTSAA	6 cut(s)	108, 149, 294, 500, 649, 951
AjnI	CCWGG	1 cut(s)	19
AluBI	AGCT	3 cut(s)	8, 488, 896
AluI	AGCT	3 cut(s)	8, 488, 896
Alw26I	GTCTC	1 cut(s)	906
AlwI	GGATC	2 cut(s)	328, 927
Aor13HI	TCCGGA	1 cut(s)	680
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	1 cut(s)	893
ApoI	RAATTY	2 cut(s)	144, 191
Asp718I	GGTACC	1 cut(s)	755
AspLEI	GCGC	1 cut(s)	858
AspS9I	GGNCC	2 cut(s)	174, 833
AsuHPI	GGTGA	4 cut(s)	59, 69, 266, 566
AvaII	GGWCC	2 cut(s)	174, 833
BanI	GGYRCC	1 cut(s)	755
BauI	CACGAG	1 cut(s)	903
BbvI	GCAGC	1 cut(s)	905
BccI	CCATC	4 cut(s)	44, 82, 88, 824
BceAI	ACGGC	1 cut(s)	329
BciT130I	CCWGG	1 cut(s)	21
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	906
BfaI	CTAG	3 cut(s)	479, 798, 839
BisI	GCNGC	1 cut(s)	894
BlsI	GCNGC	1 cut(s)	895
Bme1390I	CCNGG	1 cut(s)	21
Bme18I	GGWCC	2 cut(s)	174, 833
BmgT120I	GGNCC	2 cut(s)	174, 833
BmiI	GGNNCC	2 cut(s)	175, 757
BmrFI	CCNGG	1 cut(s)	21
BmsI	GCATC	3 cut(s)	49, 547, 755
BpmI	CTGGAG	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	906
BsaJI	CCNNGG	3 cut(s)	28, 250, 465
BsaWI	WCCGGW	1 cut(s)	680
Bsc4I	CCNNNNNNNGG	6 cut(s)	97, 207, 251, 275, 551, 716
BseAI	TCCGGA	1 cut(s)	680
BseBI	CCWGG	1 cut(s)	21
BseDI	CCNNGG	3 cut(s)	28, 250, 465
BseGI	GGATG	4 cut(s)	193, 430, 541, 876
BseLI	CCNNNNNNNGG	6 cut(s)	97, 207, 251, 275, 551, 716
BseMII	CTCAG	2 cut(s)	98, 527
BseXI	GCAGC	1 cut(s)	905
BshFI	GGCC	1 cut(s)	27
BshNI	GGYRCC	1 cut(s)	755
BsiSI	CCGG	1 cut(s)	681
BslFI	GGGAC	1 cut(s)	817
BslI	CCNNNNNNNGG	6 cut(s)	97, 207, 251, 275, 551, 716
BsmAI	GTCTC	1 cut(s)	906
BsmFI	GGGAC	1 cut(s)	817
BsnI	GGCC	1 cut(s)	27
Bso31I	GGTCTC	1 cut(s)	906
Bsp13I	TCCGGA	1 cut(s)	680
Bsp143I	GATC	5 cut(s)	256, 320, 378, 919, 954
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	2 cut(s)	97, 526
BspEI	TCCGGA	1 cut(s)	680
BspLI	GGNNCC	2 cut(s)	175, 757
BspPI	GGATC	2 cut(s)	328, 927
BspT107I	GGYRCC	1 cut(s)	755
BspTNI	GGTCTC	1 cut(s)	906
BssECI	CCNNGG	3 cut(s)	28, 250, 465
BssMI	GATC	5 cut(s)	256, 320, 378, 919, 954
BssSI	CACGAG	1 cut(s)	903
BssT1I	CCWWGG	3 cut(s)	28, 250, 465
Bst2BI	CACGAG	1 cut(s)	903
Bst2UI	CCWGG	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	3 cut(s)	158, 357, 812
BstC8I	GCNNGC	1 cut(s)	860
BstDEI	CTNAG	3 cut(s)	84, 513, 782
BstF5I	GGATG	4 cut(s)	193, 430, 541, 876
BstHHI	GCGC	1 cut(s)	858
BstKTI	GATC	5 cut(s)	259, 323, 381, 922, 957
BstMAI	GTCTC	1 cut(s)	906
BstMBI	GATC	5 cut(s)	256, 320, 378, 919, 954
BstNI	CCWGG	1 cut(s)	21
BstNSI	RCATGY	1 cut(s)	595
BstSCI	CCNGG	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	905
BstXI	CCANNNNNNTGG	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	27
BtsCI	GGATG	4 cut(s)	193, 430, 541, 876
Cac8I	GCNNGC	1 cut(s)	860
CfoI	GCGC	1 cut(s)	858
Cfr13I	GGNCC	2 cut(s)	174, 833
Csp6I	GTAC	2 cut(s)	603, 756
CviAII	CATG	4 cut(s)	178, 415, 592, 941
CviJI	RGCY	6 cut(s)	8, 27, 302, 488, 725, 896
CviKI_1	RGCY	6 cut(s)	8, 27, 302, 488, 725, 896
CviQI	GTAC	2 cut(s)	603, 756
DdeI	CTNAG	3 cut(s)	84, 513, 782
DpnI	GATC	5 cut(s)	258, 322, 380, 921, 956
DpnII	GATC	5 cut(s)	256, 320, 378, 919, 954
DraIII	CACNNNGTG	1 cut(s)	551
Eam1104I	CTCTTC	3 cut(s)	158, 357, 812
EarI	CTCTTC	3 cut(s)	158, 357, 812
Eco130I	CCWWGG	3 cut(s)	28, 250, 465
Eco147I	AGGCCT	1 cut(s)	27
Eco31I	GGTCTC	1 cut(s)	906
Eco32I	GATATC	1 cut(s)	707
Eco47I	GGWCC	2 cut(s)	174, 833
Eco57I	CTGAAG	1 cut(s)	219
EcoRI	GAATTC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	19
EcoRV	GATATC	1 cut(s)	707
EcoT14I	CCWWGG	3 cut(s)	28, 250, 465
EcoT22I	ATGCAT	1 cut(s)	748
ErhI	CCWWGG	3 cut(s)	28, 250, 465
FaeI	CATG	4 cut(s)	181, 418, 595, 944
FaqI	GGGAC	1 cut(s)	817
FatI	CATG	4 cut(s)	177, 414, 591, 940
FauI	CCCGC	1 cut(s)	411
FauNDI	CATATG	1 cut(s)	206
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	894
FokI	GGATG	4 cut(s)	200, 417, 528, 883
Fsp4HI	GCNGC	1 cut(s)	894
FspBI	CTAG	3 cut(s)	479, 798, 839
GlaI	GCGC	1 cut(s)	857
GluI	GCNGC	1 cut(s)	894
GsuI	CTGGAG	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	1 cut(s)	681
HhaI	GCGC	1 cut(s)	858
Hin1II	CATG	4 cut(s)	181, 418, 595, 944
Hin6I	GCGC	1 cut(s)	856
HinP1I	GCGC	1 cut(s)	856
HinfI	GANTC	5 cut(s)	101, 503, 649, 794, 887
HpaII	CCGG	1 cut(s)	681
HphI	GGTGA	4 cut(s)	59, 69, 266, 566
Hpy166II	GTNNAC	1 cut(s)	836
Hpy188I	TCNGA	5 cut(s)	13, 238, 376, 516, 613
Hpy188III	TCNNGA	6 cut(s)	137, 260, 500, 639, 681, 884
Hpy8I	GTNNAC	1 cut(s)	836
HpyAV	CCTTC	1 cut(s)	861
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4V	TGCA	5 cut(s)	348, 585, 746, 908, 940
HpyF3I	CTNAG	3 cut(s)	84, 513, 782
Hsp92II	CATG	4 cut(s)	181, 418, 595, 944
HspAI	GCGC	1 cut(s)	856
Kpn2I	TCCGGA	1 cut(s)	680
KpnI	GGTACC	1 cut(s)	759
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	5 cut(s)	256, 320, 378, 919, 954
LmnI	GCTCC	1 cut(s)	853
Lsp1109I	GCAGC	1 cut(s)	905
LweI	GCATC	3 cut(s)	49, 547, 755
MaeI	CTAG	3 cut(s)	479, 798, 839
MaeIII	GTNAC	1 cut(s)	530
MalI	GATC	5 cut(s)	258, 322, 380, 921, 956
MboI	GATC	5 cut(s)	256, 320, 378, 919, 954
MboII	GAAGA	6 cut(s)	96, 175, 225, 374, 482, 829
MluCI	AATT	7 cut(s)	144, 191, 537, 565, 711, 768, 825
MlyI	GAGTC	1 cut(s)	896
MnlI	CCTC	6 cut(s)	17, 78, 313, 358, 813, 835
Mph1103I	ATGCAT	1 cut(s)	748
MroI	TCCGGA	1 cut(s)	680
MslI	CAYNNNNRTG	2 cut(s)	93, 182
MspI	CCGG	1 cut(s)	681
MspR9I	CCNGG	1 cut(s)	21
MvaI	CCWGG	1 cut(s)	21
NdeI	CATATG	1 cut(s)	206
NdeII	GATC	5 cut(s)	256, 320, 378, 919, 954
NlaIII	CATG	4 cut(s)	181, 418, 595, 944
NlaIV	GGNNCC	2 cut(s)	175, 757
NmuCI	GTSAC	1 cut(s)	530
NsiI	ATGCAT	1 cut(s)	748
NspI	RCATGY	1 cut(s)	595
PceI	AGGCCT	1 cut(s)	27
PfeI	GAWTC	4 cut(s)	101, 503, 649, 794
PflMI	CCANNNNNTGG	3 cut(s)	207, 551, 716
PkrI	GCNGC	1 cut(s)	895
PleI	GAGTC	1 cut(s)	895
PpsI	GAGTC	1 cut(s)	895
Psp6I	CCWGG	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	19
PspN4I	GGNNCC	2 cut(s)	175, 757
PspPI	GGNCC	2 cut(s)	174, 833
RsaI	GTAC	2 cut(s)	604, 757
RsaNI	GTAC	2 cut(s)	603, 756
RseI	CAYNNNNRTG	2 cut(s)	93, 182
SatI	GCNGC	1 cut(s)	894
Sau3AI	GATC	5 cut(s)	256, 320, 378, 919, 954
Sau96I	GGNCC	2 cut(s)	174, 833
SchI	GAGTC	1 cut(s)	896
ScrFI	CCNGG	1 cut(s)	21
SfaNI	GCATC	3 cut(s)	49, 547, 755
SinI	GGWCC	2 cut(s)	174, 833
SmiMI	CAYNNNNRTG	2 cut(s)	93, 182
Sse9I	AATT	7 cut(s)	144, 191, 537, 565, 711, 768, 825
SseBI	AGGCCT	1 cut(s)	27
SsiI	CCGC	1 cut(s)	404
SspMI	CTAG	3 cut(s)	479, 798, 839
StuI	AGGCCT	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	19
StyI	CCWWGG	3 cut(s)	28, 250, 465
TaaI	ACNGT	1 cut(s)	358
TaqI	TCGA	4 cut(s)	119, 381, 391, 883
TaqII	GACCGA	1 cut(s)	888
TasI	AATT	7 cut(s)	144, 191, 537, 565, 711, 768, 825
TfiI	GAWTC	4 cut(s)	101, 503, 649, 794
TseFI	GTSAC	1 cut(s)	530
TseI	GCWGC	1 cut(s)	893
Tsp45I	GTSAC	1 cut(s)	530
TspDTI	ATGAA	7 cut(s)	156, 194, 204, 234, 530, 702, 920
Van91I	CCANNNNNTGG	3 cut(s)	207, 551, 716
VpaK11BI	GGWCC	2 cut(s)	174, 833
XapI	RAATTY	2 cut(s)	144, 191
XceI	RCATGY	1 cut(s)	595
XcmI	CCANNNNNNNNNTGG	1 cut(s)	449
XspI	CTAG	3 cut(s)	479, 798, 839
Zsp2I	ATGCAT	1 cut(s)	748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.