Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004462

Physical Location & Seq

Genomic Coordinates Reverse (-)

53441348 .. 53444127

Gene Structure 2780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00036600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGTGATTTCTGATGAATCTGGAGGCCTTGGCTGTGACCAAAATAGTGATGGTAATGATGCTGAGCCTCAACCACCACCATCTCAGCATGAAAATGGGGAATCATCAAAACAGAATTCAATATTCTCGCTTACTCTTGATGAAATTCAAAGCAAGAGTGGGAAGAGTTTTGGGTCCATGAACATGGATGAGTTCCTTGCCAACATATGGAGTGTTGATGAAAATCAAGTTTGTGAAGAACAACCTAACCAAGGTGATCATGAGGACCCTTCCAATGATGGGAAAGACACAACTTCAAAGACGGGATCTCTTTTGCGTCAGGGATCATTCTCCATTCCTACCCCACTTTGCAAGAAAACTGTGGATGAGGTATGGTCAGAGATCGACAAAACTCAACCACCGCCCCCTCCTAACAACATGAGTATTAATCCCGGACCTCCTCAGCGCCAACCAACAATCGGAGAAATAACTCTGGAAGATTTCCTGGTAAAAGCTGGAATAGTTCAAGAAAGACCTCAGAACGGAATGGAAAGTACTACAATTCGACCACAAGGTGGTAACACTATCAATTGTAACGTGGCAACTAGCAGCAGCACATATGGGGATACAAGTTTTGGAATGGGAAATAGTTTGATTGGTTCAGGGTTTTTTAATCCTCAAGGTTTTGTGCCAAATAATTTGTCTGGGAATGGATATGCAACTGCTCCATATCCAATGTTTGGAGAGGGAAAAATGGGGCTGGGAGAAACATCTTATGGAGGTACTAGTAGTGCAATTGAGAAATGTCATAGTTTGCCAGAATCTAGTGGGGCAAACAACAAGAAGAGGATAATCGATGGTCCACCAGAGGTACTAGTGGAGCGGAGGCAACGCAGGATGATCAAGAATCGAGAGTCAGCAGCTCGGTCTCGTGCAAGGAAACAGGCATATACTGTGGAGCTAGAAGCTGAGCTGAATCAACTTCAAGATGAGAATATAAAGCTAAAGCAATGCTTGGCGGAAATTGAAGAGAGGCGAAAACAGAAGGTCATGAGAAGGAAACGGTCGACAAAAGCACAAAAGCTGGCAGCAAAGTTGAGGACAATAAGGAGGTCTGTAAGCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008134 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

368

Amino Acids

40.23

Weight (kDa)

5.86

Isoelectric Point (pI)

57.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	287 - 336	1.8e-08	Basic region leucine zipper
bZIP_1	PF00170	288 - 342	3.8e-11	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44460
fragaria_vesca	FvH4_3g24780 FvH4_3g24800
malus_domestica	MD03G1143300.v1.1
prunus_persica	Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0044361 RchiOBHm_Chr5g0044371
rosa_laevigata	RLG00000034268 RLG00000034269
rosa_multiflora	Rmu_sc0004741.1_g000007 Rmu_sc0004741.1_g000008
rosa_roxburghii	Rroxscaffold_1G00036580 Rroxscaffold_1G00036600
rosa_rugosa	Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700
rosa_samantha	Rh5AG297900 Rh5AG298100 Rh5BG305300 Rh5BG305500 Rh5CG332300 Rh5CG332500 Rh5DG314500 Rh5DG314700
rosa_wichuraiana	Rw5G027580 Rw5G027590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	207, 554, 719
AccBSI	CCGCTC	1 cut(s)	862
AccI	GTMKAC	1 cut(s)	1046
AciI	CCGC	3 cut(s)	401, 862, 998
AclWI	GGATC	2 cut(s)	313, 331
AcsI	RAATTY	2 cut(s)	115, 144
AdeI	CACNNNGTG	1 cut(s)	554
AfaI	GTAC	3 cut(s)	535, 763, 852
AfeI	AGCGCT	1 cut(s)	1102
AfiI	CCNNNNNNNGG	7 cut(s)	207, 251, 279, 458, 521, 554, 719
AgsI	TTSAA	6 cut(s)	120, 149, 297, 506, 965, 1007
AhlI	ACTAGT	2 cut(s)	764, 853
AjnI	CCWGG	1 cut(s)	483
AluBI	AGCT	7 cut(s)	494, 902, 940, 947, 952, 982, 1063
AluI	AGCT	7 cut(s)	494, 902, 940, 947, 952, 982, 1063
Alw26I	GTCTC	1 cut(s)	912
AlwI	GGATC	2 cut(s)	313, 331
Aor51HI	AGCGCT	1 cut(s)	1102
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	4 cut(s)	588, 591, 899, 1067
ApoI	RAATTY	2 cut(s)	115, 144
ArsI	GACNNNNNNTTYG	2 cut(s)	665, 697
AseI	ATTAAT	1 cut(s)	426
AspLEI	GCGC	2 cut(s)	447, 1103
AspS9I	GGNCC	4 cut(s)	174, 265, 434, 839
AsuC2I	CCSGG	1 cut(s)	432
AsuHPI	GGTGA	2 cut(s)	16, 266
AvaII	GGWCC	4 cut(s)	174, 265, 434, 839
BauI	CACGAG	1 cut(s)	909
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	4 cut(s)	600, 603, 911, 1079
BccI	CCATC	4 cut(s)	44, 88, 272, 830
BciT130I	CCWGG	1 cut(s)	485
BciVI	GTATCC	1 cut(s)	598
BclI	TGATCA	2 cut(s)	256, 879
BcnI	CCSGG	1 cut(s)	432
BcoDI	GTCTC	1 cut(s)	912
BcuI	ACTAGT	2 cut(s)	764, 853
BfaI	CTAG	5 cut(s)	585, 765, 804, 854, 941
BfoI	RGCGCY	2 cut(s)	448, 1104
BfuI	GTATCC	1 cut(s)	598
BisI	GCNGC	4 cut(s)	589, 592, 900, 1068
BlpI	GCTNAGC	2 cut(s)	63, 948
BlsI	GCNGC	4 cut(s)	590, 593, 901, 1069
BmcAI	AGTACT	1 cut(s)	535
Bme1390I	CCNGG	2 cut(s)	432, 485
Bme18I	GGWCC	4 cut(s)	174, 265, 434, 839
BmgT120I	GGNCC	4 cut(s)	174, 265, 434, 839
BmiI	GGNNCC	2 cut(s)	175, 267
BmrFI	CCNGG	2 cut(s)	432, 485
BmsI	GCATC	1 cut(s)	49
BpmI	CTGGAG	1 cut(s)	42
Bpu10I	CCTNAGC	1 cut(s)	441
Bpu1102I	GCTNAGC	2 cut(s)	63, 948
BpuEI	CTTGAG	1 cut(s)	642
BpuMI	CCSGG	1 cut(s)	432
Bsa29I	ATCGAT	1 cut(s)	834
BsaBI	GATNNNNATC	1 cut(s)	222
BsaI	GGTCTC	1 cut(s)	912
BsaJI	CCNNGG	2 cut(s)	28, 250
Bsc4I	CCNNNNNNNGG	7 cut(s)	207, 251, 279, 458, 521, 554, 719
Bse3DI	GCAATG	1 cut(s)	995
Bse8I	GATNNNNATC	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	485
BseCI	ATCGAT	1 cut(s)	834
BseDI	CCNNGG	2 cut(s)	28, 250
BseGI	GGATG	3 cut(s)	193, 370, 882
BseJI	GATNNNNATC	1 cut(s)	222
BseLI	CCNNNNNNNGG	7 cut(s)	207, 251, 279, 458, 521, 554, 719
BseMI	GCAATG	1 cut(s)	995
BseMII	CTCAG	5 cut(s)	54, 98, 455, 530, 939
BseRI	GAGGAG	1 cut(s)	429
BseXI	GCAGC	4 cut(s)	600, 603, 911, 1079
BseYI	CCCAGC	1 cut(s)	739
Bsh1285I	CGRYCG	1 cut(s)	1046
BshFI	GGCC	1 cut(s)	27
BshVI	ATCGAT	1 cut(s)	834
BsiEI	CGRYCG	1 cut(s)	1046
BsiSI	CCGG	1 cut(s)	432
BslI	CCNNNNNNNGG	7 cut(s)	207, 251, 279, 458, 521, 554, 719
BsmAI	GTCTC	1 cut(s)	912
BsnI	GGCC	1 cut(s)	27
Bso31I	GGTCTC	1 cut(s)	912
Bsp143I	GATC	5 cut(s)	256, 305, 323, 381, 879
Bsp1720I	GCTNAGC	2 cut(s)	63, 948
BspACI	CCGC	3 cut(s)	401, 862, 998
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	5 cut(s)	55, 97, 454, 529, 940
BspDI	ATCGAT	1 cut(s)	834
BspHI	TCATGA	2 cut(s)	259, 1029
BspLI	GGNNCC	2 cut(s)	175, 267
BspPI	GGATC	2 cut(s)	313, 331
BspTNI	GGTCTC	1 cut(s)	912
BsrBI	CCGCTC	1 cut(s)	862
BsrDI	GCAATG	1 cut(s)	995
BssECI	CCNNGG	2 cut(s)	28, 250
BssMI	GATC	5 cut(s)	256, 305, 323, 381, 879
BssSI	CACGAG	1 cut(s)	909
BssT1I	CCWWGG	2 cut(s)	28, 250
Bst2BI	CACGAG	1 cut(s)	909
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	3 cut(s)	361, 934, 1044
Bst6I	CTCTTC	3 cut(s)	158, 818, 1002
BstC8I	GCNNGC	1 cut(s)	1065
BstDEI	CTNAG	5 cut(s)	63, 84, 441, 516, 948
BstENI	CCTNNNNNAGG	1 cut(s)	249
BstF5I	GGATG	3 cut(s)	193, 370, 882
BstH2I	RGCGCY	2 cut(s)	448, 1104
BstHHI	GCGC	2 cut(s)	447, 1103
BstKTI	GATC	5 cut(s)	259, 308, 326, 384, 882
BstMAI	GTCTC	1 cut(s)	912
BstMBI	GATC	5 cut(s)	256, 305, 323, 381, 879
BstMCI	CGRYCG	1 cut(s)	1046
BstNI	CCWGG	1 cut(s)	485
BstSCI	CCNGG	2 cut(s)	430, 483
BstV1I	GCAGC	4 cut(s)	600, 603, 911, 1079
BstX2I	RGATCY	1 cut(s)	305
BstXI	CCANNNNNNTGG	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	305
Bsu15I	ATCGAT	1 cut(s)	834
BsuI	GTATCC	1 cut(s)	598
BsuRI	GGCC	1 cut(s)	27
BsuTUI	ATCGAT	1 cut(s)	834
BtsCI	GGATG	3 cut(s)	193, 370, 882
Cac8I	GCNNGC	1 cut(s)	1065
CciI	TCATGA	2 cut(s)	259, 1029
CfoI	GCGC	2 cut(s)	447, 1103
Cfr13I	GGNCC	4 cut(s)	174, 265, 434, 839
ClaI	ATCGAT	1 cut(s)	834
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	3 cut(s)	534, 762, 851
CviAII	CATG	6 cut(s)	89, 178, 184, 260, 418, 1030
CviQI	GTAC	3 cut(s)	534, 762, 851
DdeI	CTNAG	5 cut(s)	63, 84, 441, 516, 948
DpnI	GATC	5 cut(s)	258, 307, 325, 383, 881
DpnII	GATC	5 cut(s)	256, 305, 323, 381, 879
DraIII	CACNNNGTG	1 cut(s)	554
Eam1104I	CTCTTC	3 cut(s)	158, 818, 1002
EarI	CTCTTC	3 cut(s)	158, 818, 1002
EciI	GGCGGA	1 cut(s)	1013
Eco130I	CCWWGG	2 cut(s)	28, 250
Eco147I	AGGCCT	1 cut(s)	27
Eco31I	GGTCTC	1 cut(s)	912
Eco47I	GGWCC	4 cut(s)	174, 265, 434, 839
Eco47III	AGCGCT	1 cut(s)	1102
EcoNI	CCTNNNNNAGG	1 cut(s)	249
EcoO109I	RGGNCCY	1 cut(s)	265
EcoRI	GAATTC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	483
EcoT14I	CCWWGG	2 cut(s)	28, 250
ErhI	CCWWGG	2 cut(s)	28, 250
FaeI	CATG	6 cut(s)	92, 181, 187, 263, 421, 1033
FalI	AAGNNNNNCTT	2 cut(s)	977, 1009
FatI	CATG	6 cut(s)	88, 177, 183, 259, 417, 1029
FauNDI	CATATG	2 cut(s)	206, 598
FbaI	TGATCA	2 cut(s)	256, 879
FblI	GTMKAC	1 cut(s)	1046
Fnu4HI	GCNGC	4 cut(s)	589, 592, 900, 1068
FokI	GGATG	3 cut(s)	200, 377, 889
Fsp4HI	GCNGC	4 cut(s)	589, 592, 900, 1068
FspBI	CTAG	5 cut(s)	585, 765, 804, 854, 941
GlaI	GCGC	2 cut(s)	446, 1102
GluI	GCNGC	4 cut(s)	589, 592, 900, 1068
GsaI	CCCAGC	1 cut(s)	743
GsuI	CTGGAG	1 cut(s)	42
HaeII	RGCGCY	2 cut(s)	448, 1104
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	1 cut(s)	432
HgaI	GACGC	1 cut(s)	305
HhaI	GCGC	2 cut(s)	447, 1103
Hin1II	CATG	6 cut(s)	92, 181, 187, 263, 421, 1033
Hin6I	GCGC	2 cut(s)	445, 1101
HinP1I	GCGC	2 cut(s)	445, 1101
HincII	GTYRAC	1 cut(s)	1047
HindII	GTYRAC	1 cut(s)	1047
HinfI	GANTC	6 cut(s)	17, 101, 800, 886, 893, 955
HpaII	CCGG	1 cut(s)	432
HphI	GGTGA	2 cut(s)	16, 266
Hpy166II	GTNNAC	2 cut(s)	842, 1047
Hpy188I	TCNGA	4 cut(s)	13, 379, 461, 519
Hpy188III	TCNNGA	9 cut(s)	21, 137, 260, 473, 506, 883, 890, 965, 1030
Hpy8I	GTNNAC	2 cut(s)	842, 1047
HpyAV	CCTTC	3 cut(s)	279, 1018, 1029
HpyCH4III	ACNGT	3 cut(s)	361, 934, 1044
HpyCH4IV	ACGT	1 cut(s)	576
HpyCH4V	TGCA	4 cut(s)	351, 698, 773, 914
HpyF3I	CTNAG	5 cut(s)	63, 84, 441, 516, 948
HpySE526I	ACGT	1 cut(s)	576
Hsp92II	CATG	6 cut(s)	92, 181, 187, 263, 421, 1033
HspAI	GCGC	2 cut(s)	445, 1101
Ksp22I	TGATCA	2 cut(s)	256, 879
Kzo9I	GATC	5 cut(s)	256, 305, 323, 381, 879
LmnI	GCTCC	3 cut(s)	709, 859, 937
Lsp1109I	GCAGC	4 cut(s)	600, 603, 911, 1079
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	5 cut(s)	585, 765, 804, 854, 941
MaeII	ACGT	1 cut(s)	576
MaeIII	GTNAC	3 cut(s)	35, 557, 572
MalI	GATC	5 cut(s)	258, 307, 325, 383, 881
MbiI	CCGCTC	1 cut(s)	862
MboI	GATC	5 cut(s)	256, 305, 323, 381, 879
MboII	GAAGA	5 cut(s)	175, 248, 488, 835, 1019
MfeI	CAATTG	2 cut(s)	568, 774
MflI	RGATCY	1 cut(s)	305
MluCI	AATT	7 cut(s)	115, 144, 540, 568, 676, 774, 1002
MlyI	GAGTC	1 cut(s)	902
MseI	TTAA	2 cut(s)	426, 651
MslI	CAYNNNNRTG	2 cut(s)	93, 182
MspI	CCGG	1 cut(s)	432
MspR9I	CCNGG	2 cut(s)	432, 485
MunI	CAATTG	2 cut(s)	568, 774
MvaI	CCWGG	1 cut(s)	485
NciI	CCSGG	1 cut(s)	432
NdeI	CATATG	2 cut(s)	206, 598
NdeII	GATC	5 cut(s)	256, 305, 323, 381, 879
NlaIII	CATG	6 cut(s)	92, 181, 187, 263, 421, 1033
NlaIV	GGNNCC	2 cut(s)	175, 267
NmuCI	GTSAC	1 cut(s)	35
PagI	TCATGA	2 cut(s)	259, 1029
PceI	AGGCCT	1 cut(s)	27
PfeI	GAWTC	5 cut(s)	17, 101, 800, 886, 955
PflMI	CCANNNNNTGG	3 cut(s)	207, 554, 719
PfoI	TCCNGGA	1 cut(s)	430
PkrI	GCNGC	4 cut(s)	590, 593, 901, 1069
PleI	GAGTC	1 cut(s)	901
PpsI	GAGTC	1 cut(s)	901
PpuMI	RGGWCCY	1 cut(s)	265
PshBI	ATTAAT	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	483
PspFI	CCCAGC	1 cut(s)	739
PspGI	CCWGG	1 cut(s)	483
PspN4I	GGNNCC	2 cut(s)	175, 267
PspPI	GGNCC	4 cut(s)	174, 265, 434, 839
PspPPI	RGGWCCY	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	305
RsaI	GTAC	3 cut(s)	535, 763, 852
RsaNI	GTAC	3 cut(s)	534, 762, 851
RseI	CAYNNNNRTG	2 cut(s)	93, 182
SalI	GTCGAC	1 cut(s)	1045
SaqAI	TTAA	2 cut(s)	426, 651
SatI	GCNGC	4 cut(s)	589, 592, 900, 1068
Sau3AI	GATC	5 cut(s)	256, 305, 323, 381, 879
Sau96I	GGNCC	4 cut(s)	174, 265, 434, 839
ScaI	AGTACT	1 cut(s)	535
SchI	GAGTC	1 cut(s)	902
ScrFI	CCNGG	2 cut(s)	432, 485
SfaNI	GCATC	1 cut(s)	49
SinI	GGWCC	4 cut(s)	174, 265, 434, 839
SmiMI	CAYNNNNRTG	2 cut(s)	93, 182
SmlI	CTYRAG	1 cut(s)	657
SmoI	CTYRAG	1 cut(s)	657
SpeI	ACTAGT	2 cut(s)	764, 853
Sse9I	AATT	7 cut(s)	115, 144, 540, 568, 676, 774, 1002
SseBI	AGGCCT	1 cut(s)	27
SsiI	CCGC	3 cut(s)	401, 862, 998
SspI	AATATT	1 cut(s)	123
SspMI	CTAG	5 cut(s)	585, 765, 804, 854, 941
StuI	AGGCCT	1 cut(s)	27
StyD4I	CCNGG	2 cut(s)	430, 483
StyI	CCWWGG	2 cut(s)	28, 250
TaaI	ACNGT	3 cut(s)	361, 934, 1044
TaiI	ACGT	1 cut(s)	579
TaqI	TCGA	5 cut(s)	384, 544, 834, 889, 1046
TaqII	GACCGA	1 cut(s)	894
TasI	AATT	7 cut(s)	115, 144, 540, 568, 676, 774, 1002
TatI	WGTACW	1 cut(s)	533
TfiI	GAWTC	5 cut(s)	17, 101, 800, 886, 955
Tru1I	TTAA	2 cut(s)	426, 651
Tru9I	TTAA	2 cut(s)	426, 651
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	4 cut(s)	588, 591, 899, 1067
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	5 cut(s)	30, 105, 156, 194, 234
TspGWI	ACGGA	1 cut(s)	537
Van91I	CCANNNNNTGG	3 cut(s)	207, 554, 719
VpaK11BI	GGWCC	4 cut(s)	174, 265, 434, 839
VspI	ATTAAT	1 cut(s)	426
XagI	CCTNNNNNAGG	1 cut(s)	249
XapI	RAATTY	2 cut(s)	115, 144
XcmI	CCANNNNNNNNNTGG	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	1046
XspI	CTAG	5 cut(s)	585, 765, 804, 854, 941
ZrmI	AGTACT	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.