Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004462

Physical Location & Seq

Genomic Coordinates Forward (+)

9997930 .. 10000923

Gene Structure 2994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G128900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGCTCTTCATAGGATGCTCTCTGCTCCACTTTCTTCTGCCCTCCTCCATTGAAGCATATAATCAGCCTCACCTCAGGGGGCTGATTATTGAGCATCTATTCTTACAACAACATTCTCCATTTTATGCTAAAATGGTAGCTTCTGACGAATCTGGAAGCATCGGCTATGATAATGACAATTTCGAATTCGAATTCGAACCCGAACAGCCACTAGAACCGCAAGAAGAATCATCCCAAGACGACTCACATCATTCCATGGGTAATAATACCAAACAGAATTCAATATTCTCCCTCACTCTGGATGAAATCCAATGCAAGAGTGGGAGGAATTTTGGGTCCATGAACATGGATGAGTTCCTTGCCAACATTTGGAGTGTTGAAGAAGAAAATCAAACACAACAACAACCCAGCCAATGTGACCAAGACGCCAGTGACAAAGACACAACTATCAACCCCAGTACTCTGTCCCGGCAGGGCTCGTTCTCCATCCCTATCCCGCTTTGCAAGAAAACCGTGGACGAGGTCTGGTCGGAAATCGAAAGAAGTCGACCACAACACCATGACCCTGACAACAACATTAGCGACTCTGTACCTCCGCAGCGCCAGCAAACAATCGGAGAAATTACTCTAGAAGATTTCCTCGTAAAAGCCGGGGTTGTTCAAGAATCTCCCTCCAAGTCCAAGCCTCCTCCTCTGAAGAAGATGGAAAGTACCCTAATTCAACAGCAATGTGGTGACACTAATATGGGAAACGAGATCAGCATATGTTTGGATGCAAGTTTTGGAATTGGGAGACAGTTGTTTGGTTCAGGATTTTTTAATCTCCAAAATGATGTGCCAAGCAATTTGTCCGGGAATGGATACGCAATAGGTGCTACATACCCAATGTTGGGTAGACAGAGTAAAGTGATTGTGGGAGAACCATCTTGTGTTAGTGCAATTGAGAAATGCCATAGCTTGCCGGAATCGAGCAGTGGGGGTGGAGCAAAGAACAAGAAGAGGATAATAGATGGTCCACCGGAGGTAGTAGTCGAGCGGAGGCAACGCAGGATGATCAAGAATCGAGAGTCAGCAGCAAGGTCTCGTGCCAGGAAACAGGCATATACAGTGGAACTGGAAGCTGAGCTGAATCAACTTAAAGAGGAGAACACAAAGCTGAAGCAGAATGTGGCCGAATCTGAACAGAAGAGGAAGCAAGAGCTATTGGGAAAGAAACAACCTACAAGAGCACAAAAATTGGCAGAAAAGTTGAGGACAATGAGAAGGGCAGTAAGCTTGGCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008134 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

429

Amino Acids

47.97

Weight (kDa)

5.63

Isoelectric Point (pI)

64.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44460
fragaria_vesca	FvH4_3g24780 FvH4_3g24800
malus_domestica	MD03G1143300.v1.1
prunus_persica	Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0044361 RchiOBHm_Chr5g0044371
rosa_laevigata	RLG00000034268 RLG00000034269
rosa_multiflora	Rmu_sc0004741.1_g000007 Rmu_sc0004741.1_g000008
rosa_roxburghii	Rroxscaffold_1G00036580 Rroxscaffold_1G00036600
rosa_rugosa	Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700
rosa_samantha	Rh5AG297900 Rh5AG298100 Rh5BG305300 Rh5BG305500 Rh5CG332300 Rh5CG332500 Rh5DG314500 Rh5DG314700
rosa_wichuraiana	Rw5G027580 Rw5G027590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	369
AccBSI	CCGCTC	1 cut(s)	1036
AccI	GTMKAC	2 cut(s)	547, 895
AciI	CCGC	4 cut(s)	218, 497, 596, 1036
AcoI	YGGCCR	1 cut(s)	1170
AcsI	RAATTY	4 cut(s)	185, 191, 277, 328
AcuI	CTGAAG	2 cut(s)	716, 1178
AcyI	GRCGYC	1 cut(s)	426
AfaI	GTAC	3 cut(s)	460, 591, 712
AfiI	CCNNNNNNNGG	4 cut(s)	298, 369, 889, 890
AgsI	TTSAA	5 cut(s)	53, 282, 380, 662, 722
AjnI	CCWGG	1 cut(s)	1088
AluBI	AGCT	7 cut(s)	140, 957, 1121, 1126, 1156, 1201, 1275
AluI	AGCT	7 cut(s)	140, 957, 1121, 1126, 1156, 1201, 1275
Alw21I	GWGCWC	1 cut(s)	1231
Alw26I	GTCTC	2 cut(s)	787, 1086
AoxI	GGCC	1 cut(s)	1170
ApeKI	GCWGC	2 cut(s)	598, 1073
ApoI	RAATTY	4 cut(s)	185, 191, 277, 328
AspLEI	GCGC	1 cut(s)	603
AspS9I	GGNCC	2 cut(s)	336, 1013
AsuC2I	CCSGG	3 cut(s)	469, 652, 853
AsuHPI	GGTGA	2 cut(s)	62, 746
AsuII	TTCGAA	3 cut(s)	183, 189, 195
AvaII	GGWCC	2 cut(s)	336, 1013
AxyI	CCTNAGG	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	479
BauI	CACGAG	1 cut(s)	1083
Bbv12I	GWGCWC	1 cut(s)	1231
BbvI	GCAGC	2 cut(s)	610, 1085
BccI	CCATC	4 cut(s)	494, 697, 931, 1004
BciT130I	CCWGG	1 cut(s)	1090
BciVI	GTATCC	1 cut(s)	854
BclI	TGATCA	1 cut(s)	1053
BcnI	CCSGG	3 cut(s)	469, 652, 853
BcoDI	GTCTC	2 cut(s)	787, 1086
BfaI	CTAG	2 cut(s)	212, 629
BfoI	RGCGCY	1 cut(s)	604
BfuI	GTATCC	1 cut(s)	854
BisI	GCNGC	2 cut(s)	599, 1074
BlpI	GCTNAGC	1 cut(s)	1122
BlsI	GCNGC	2 cut(s)	600, 1075
BmcAI	AGTACT	1 cut(s)	460
Bme1390I	CCNGG	4 cut(s)	469, 652, 853, 1090
Bme18I	GGWCC	2 cut(s)	336, 1013
BmgT120I	GGNCC	2 cut(s)	336, 1013
BmiI	GGNNCC	1 cut(s)	337
BmrFI	CCNGG	4 cut(s)	469, 652, 853, 1090
BmrI	ACTGGG	1 cut(s)	450
BmsI	GCATC	4 cut(s)	5, 103, 168, 763
BmuI	ACTGGG	1 cut(s)	450
Bpu1102I	GCTNAGC	1 cut(s)	1122
Bpu14I	TTCGAA	3 cut(s)	183, 189, 195
BpuMI	CCSGG	3 cut(s)	469, 652, 853
BsaHI	GRCGYC	1 cut(s)	426
BsaI	GGTCTC	1 cut(s)	1086
BsaJI	CCNNGG	3 cut(s)	255, 513, 651
BsaWI	WCCGGW	1 cut(s)	1018
Bsc4I	CCNNNNNNNGG	4 cut(s)	298, 369, 889, 890
Bse1I	ACTGG	3 cut(s)	429, 456, 1119
Bse21I	CCTNAGG	1 cut(s)	74
Bse3DI	GCAATG	1 cut(s)	734
BseBI	CCWGG	1 cut(s)	1090
BseDI	CCNNGG	3 cut(s)	255, 513, 651
BseGI	GGATG	7 cut(s)	20, 230, 307, 355, 486, 778, 1056
BseLI	CCNNNNNNNGG	4 cut(s)	298, 369, 889, 890
BseMI	GCAATG	1 cut(s)	734
BseMII	CTCAG	2 cut(s)	88, 1113
BseNI	ACTGG	3 cut(s)	429, 456, 1119
BseRI	GAGGAG	4 cut(s)	34, 678, 681, 1157
BseXI	GCAGC	2 cut(s)	610, 1085
BseYI	CCCAGC	1 cut(s)	407
BshFI	GGCC	1 cut(s)	1172
BsiHKAI	GWGCWC	1 cut(s)	1231
BsiSI	CCGG	5 cut(s)	469, 651, 852, 962, 1019
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	4 cut(s)	298, 369, 889, 890
BsmAI	GTCTC	2 cut(s)	787, 1086
BsmFI	GGGAC	1 cut(s)	451
BsnI	GGCC	1 cut(s)	1172
Bso31I	GGTCTC	1 cut(s)	1086
Bsp119I	TTCGAA	3 cut(s)	183, 189, 195
Bsp1286I	GDGCHC	2 cut(s)	479, 1231
Bsp143I	GATC	2 cut(s)	756, 1053
Bsp1720I	GCTNAGC	1 cut(s)	1122
Bsp19I	CCATGG	1 cut(s)	255
BspACI	CCGC	4 cut(s)	218, 497, 596, 1036
BspANI	GGCC	1 cut(s)	1172
BspCNI	CTCAG	2 cut(s)	87, 1114
BspLI	GGNNCC	1 cut(s)	337
BspQI	GCTCTTC	1 cut(s)	11
BspT104I	TTCGAA	3 cut(s)	183, 189, 195
BspTNI	GGTCTC	1 cut(s)	1086
BsrBI	CCGCTC	1 cut(s)	1036
BsrDI	GCAATG	1 cut(s)	734
BsrI	ACTGG	3 cut(s)	429, 456, 1119
BssECI	CCNNGG	3 cut(s)	255, 513, 651
BssMI	GATC	2 cut(s)	756, 1053
BssNI	GRCGYC	1 cut(s)	426
BssSI	CACGAG	1 cut(s)	1083
BssT1I	CCWWGG	1 cut(s)	255
Bst2BI	CACGAG	1 cut(s)	1083
Bst2UI	CCWGG	1 cut(s)	1090
Bst4CI	ACNGT	3 cut(s)	514, 798, 1108
Bst6I	CTCTTC	3 cut(s)	11, 992, 1181
BstACI	GRCGYC	1 cut(s)	426
BstAPI	GCANNNNNTGC	1 cut(s)	872
BstBI	TTCGAA	3 cut(s)	183, 189, 195
BstC8I	GCNNGC	2 cut(s)	605, 959
BstDEI	CTNAG	2 cut(s)	74, 1122
BstDSI	CCRYGG	2 cut(s)	255, 513
BstF5I	GGATG	7 cut(s)	20, 230, 307, 355, 486, 778, 1056
BstH2I	RGCGCY	1 cut(s)	604
BstHHI	GCGC	1 cut(s)	603
BstKTI	GATC	2 cut(s)	759, 1056
BstMAI	GTCTC	2 cut(s)	787, 1086
BstMBI	GATC	2 cut(s)	756, 1053
BstMWI	GCNNNNNNNGC	2 cut(s)	604, 872
BstNI	CCWGG	1 cut(s)	1090
BstSCI	CCNGG	4 cut(s)	467, 650, 851, 1088
BstV1I	GCAGC	2 cut(s)	610, 1085
BstXI	CCANNNNNNTGG	1 cut(s)	346
Bsu36I	CCTNAGG	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	854
BsuRI	GGCC	1 cut(s)	1172
BtgI	CCRYGG	2 cut(s)	255, 513
BtsCI	GGATG	7 cut(s)	20, 230, 307, 355, 486, 778, 1056
BtsI	GCAGTG	1 cut(s)	979
BtsIMutI	CAGTG	3 cut(s)	436, 979, 1113
Cac8I	GCNNGC	2 cut(s)	605, 959
CfoI	GCGC	1 cut(s)	603
Cfr13I	GGNCC	2 cut(s)	336, 1013
CseI	GACGC	1 cut(s)	434
Csp6I	GTAC	3 cut(s)	459, 590, 711
CviAII	CATG	5 cut(s)	256, 340, 346, 560, 1281
CviQI	GTAC	3 cut(s)	459, 590, 711
DdeI	CTNAG	2 cut(s)	74, 1122
DpnI	GATC	2 cut(s)	758, 1055
DpnII	GATC	2 cut(s)	756, 1053
EaeI	YGGCCR	1 cut(s)	1170
Eam1104I	CTCTTC	3 cut(s)	11, 992, 1181
EarI	CTCTTC	3 cut(s)	11, 992, 1181
Eco130I	CCWWGG	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	479
Eco31I	GGTCTC	1 cut(s)	1086
Eco47I	GGWCC	2 cut(s)	336, 1013
Eco57I	CTGAAG	2 cut(s)	716, 1178
Eco81I	CCTNAGG	1 cut(s)	74
EcoRI	GAATTC	3 cut(s)	185, 191, 277
EcoRII	CCWGG	1 cut(s)	1088
EcoT14I	CCWWGG	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	479
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	5 cut(s)	259, 343, 349, 563, 1284
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	5 cut(s)	255, 339, 345, 559, 1280
FauI	CCCGC	1 cut(s)	504
FauNDI	CATATG	1 cut(s)	764
FbaI	TGATCA	1 cut(s)	1053
FblI	GTMKAC	2 cut(s)	547, 895
Fnu4HI	GCNGC	2 cut(s)	599, 1074
FokI	GGATG	7 cut(s)	27, 217, 314, 362, 473, 785, 1063
FriOI	GRGCYC	1 cut(s)	479
Fsp4HI	GCNGC	2 cut(s)	599, 1074
FspBI	CTAG	2 cut(s)	212, 629
GlaI	GCGC	1 cut(s)	602
GluI	GCNGC	2 cut(s)	599, 1074
GsaI	CCCAGC	1 cut(s)	411
HaeII	RGCGCY	1 cut(s)	604
HaeIII	GGCC	1 cut(s)	1172
HapII	CCGG	5 cut(s)	469, 651, 852, 962, 1019
HgaI	GACGC	1 cut(s)	434
HhaI	GCGC	1 cut(s)	603
Hin1I	GRCGYC	1 cut(s)	426
Hin1II	CATG	5 cut(s)	259, 343, 349, 563, 1284
Hin6I	GCGC	1 cut(s)	601
HinP1I	GCGC	1 cut(s)	601
HincII	GTYRAC	1 cut(s)	548
HindII	GTYRAC	1 cut(s)	548
HindIII	AAGCTT	1 cut(s)	1273
HpaII	CCGG	5 cut(s)	469, 651, 852, 962, 1019
HphI	GGTGA	2 cut(s)	62, 746
Hpy166II	GTNNAC	4 cut(s)	517, 548, 896, 1016
Hpy188I	TCNGA	5 cut(s)	145, 532, 617, 696, 1180
Hpy188III	TCNNGA	7 cut(s)	153, 299, 629, 662, 810, 1057, 1064
Hpy8I	GTNNAC	4 cut(s)	517, 548, 896, 1016
HpyAV	CCTTC	1 cut(s)	1257
HpyCH4III	ACNGT	3 cut(s)	514, 798, 1108
HpyCH4V	TGCA	4 cut(s)	315, 504, 776, 938
HpyF10VI	GCNNNNNNNGC	2 cut(s)	604, 872
HpyF3I	CTNAG	2 cut(s)	74, 1122
Hsp92I	GRCGYC	1 cut(s)	426
Hsp92II	CATG	5 cut(s)	259, 343, 349, 563, 1284
HspAI	GCGC	1 cut(s)	601
Ksp22I	TGATCA	1 cut(s)	1053
Kzo9I	GATC	2 cut(s)	756, 1053
LguI	GCTCTTC	1 cut(s)	11
LmnI	GCTCC	2 cut(s)	30, 983
Lsp1109I	GCAGC	2 cut(s)	610, 1085
LweI	GCATC	4 cut(s)	5, 103, 168, 763
MaeI	CTAG	2 cut(s)	212, 629
MaeIII	GTNAC	3 cut(s)	416, 431, 734
MalI	GATC	2 cut(s)	758, 1055
MbiI	CCGCTC	1 cut(s)	1036
MboI	GATC	2 cut(s)	756, 1053
MboII	GAAGA	9 cut(s)	26, 236, 392, 395, 644, 709, 712, 1009, 1198
MfeI	CAATTG	1 cut(s)	939
MhlI	GDGCHC	2 cut(s)	479, 1231
MlyI	GAGTC	3 cut(s)	236, 578, 1076
MmeI	TCCRAC	1 cut(s)	510
MseI	TTAA	2 cut(s)	819, 1137
MslI	CAYNNNNRTG	2 cut(s)	344, 743
MspI	CCGG	5 cut(s)	469, 651, 852, 962, 1019
MspR9I	CCNGG	4 cut(s)	469, 652, 853, 1090
MunI	CAATTG	1 cut(s)	939
MvaI	CCWGG	1 cut(s)	1090
MwoI	GCNNNNNNNGC	2 cut(s)	604, 872
NciI	CCSGG	3 cut(s)	469, 652, 853
NcoI	CCATGG	1 cut(s)	255
NdeI	CATATG	1 cut(s)	764
NdeII	GATC	2 cut(s)	756, 1053
NlaIII	CATG	5 cut(s)	259, 343, 349, 563, 1284
NlaIV	GGNNCC	1 cut(s)	337
NmuCI	GTSAC	3 cut(s)	416, 431, 734
NspV	TTCGAA	3 cut(s)	183, 189, 195
PciSI	GCTCTTC	1 cut(s)	11
PfeI	GAWTC	7 cut(s)	149, 227, 665, 965, 1060, 1129, 1175
PflFI	GACNNNGTC	1 cut(s)	521
PflMI	CCANNNNNTGG	1 cut(s)	369
PfoI	TCCNGGA	1 cut(s)	851
PkrI	GCNGC	2 cut(s)	600, 1075
PleI	GAGTC	3 cut(s)	236, 578, 1075
PpsI	GAGTC	3 cut(s)	236, 578, 1075
Psp6I	CCWGG	1 cut(s)	1088
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	1088
PspN4I	GGNNCC	1 cut(s)	337
PspPI	GGNCC	2 cut(s)	336, 1013
PsyI	GACNNNGTC	1 cut(s)	521
RsaI	GTAC	3 cut(s)	460, 591, 712
RsaNI	GTAC	3 cut(s)	459, 590, 711
RseI	CAYNNNNRTG	2 cut(s)	344, 743
SalI	GTCGAC	1 cut(s)	546
SapI	GCTCTTC	1 cut(s)	11
SaqAI	TTAA	2 cut(s)	819, 1137
SatI	GCNGC	2 cut(s)	599, 1074
Sau3AI	GATC	2 cut(s)	756, 1053
Sau96I	GGNCC	2 cut(s)	336, 1013
ScaI	AGTACT	1 cut(s)	460
SchI	GAGTC	3 cut(s)	236, 578, 1076
ScrFI	CCNGG	4 cut(s)	469, 652, 853, 1090
SduI	GDGCHC	2 cut(s)	479, 1231
SfaNI	GCATC	4 cut(s)	5, 103, 168, 763
SfuI	TTCGAA	3 cut(s)	183, 189, 195
SinI	GGWCC	2 cut(s)	336, 1013
SmiMI	CAYNNNNRTG	2 cut(s)	344, 743
SsiI	CCGC	4 cut(s)	218, 497, 596, 1036
SspI	AATATT	1 cut(s)	285
SspMI	CTAG	2 cut(s)	212, 629
StyD4I	CCNGG	4 cut(s)	467, 650, 851, 1088
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	3 cut(s)	514, 798, 1108
TaqI	TCGA	8 cut(s)	183, 189, 195, 537, 547, 968, 1032, 1063
TatI	WGTACW	1 cut(s)	458
TfiI	GAWTC	7 cut(s)	149, 227, 665, 965, 1060, 1129, 1175
Tru1I	TTAA	2 cut(s)	819, 1137
Tru9I	TTAA	2 cut(s)	819, 1137
TscAI	CASTG	3 cut(s)	436, 979, 1113
TseFI	GTSAC	3 cut(s)	416, 431, 734
TseI	GCWGC	2 cut(s)	598, 1073
Tsp45I	GTSAC	3 cut(s)	416, 431, 734
TspDTI	ATGAA	2 cut(s)	318, 356
TspRI	CASTG	3 cut(s)	436, 979, 1113
Tth111I	GACNNNGTC	1 cut(s)	521
Van91I	CCANNNNNTGG	1 cut(s)	369
VpaK11BI	GGWCC	2 cut(s)	336, 1013
XapI	RAATTY	4 cut(s)	185, 191, 277, 328
XbaI	TCTAGA	1 cut(s)	628
XcmI	CCANNNNNNNNNTGG	1 cut(s)	317
XmiI	GTMKAC	2 cut(s)	547, 895
XspI	CTAG	2 cut(s)	212, 629
ZrmI	AGTACT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.