Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004462

Physical Location & Seq

Genomic Coordinates Reverse (-)

16079432 .. 16081906

Gene Structure 2475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G44460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGTCGGTTTTCGAATCGGAGACTTCGAACTTCCACGTCTACAACAACCACGAAATCCAAACGCAACCGCAAATGCAAACGTTTCTGTCGGAGGAGGAACCGGTAGGGAGACAGAACTCGATTTTGTCACTAACTCTTGACGAAATTCAGATGAAAAGCGGTAAGAGCTTTGGAGCGATGAACATGGACGAGTTCCTAGCGAACTTGTGGACAACCGTTGAAGAAAACGACAACGAAGGAGGTGGGGCTCACAACGACGGAGAGAAGCCGGCGGTGCTGCCACGTCAAGGGTCGTTGTCCCTCCCTGTGCCTTTATGCAAGAAAACGGTCGACGAGGTTTGGCTCGAGATACAAAACGGTGTACAACAACATCCACCGTCGTCGAATTCCGGTCAAAACTCCGCCGAAAATATTCGCCGGCAACAAACCCTTGGTGAGATCACTCTCGAGGATTTTCTTGTTAAGGCTGGTGTTGTACAAGAACCGTTGAAGACAACGATGAGGATGTCGAGTTCTGATTTTGGTTATAACCCCGAGTTTGGAGTTGGTTTACATTGTCAGAACCAAAACAATTATGGTGATAACCGGTCGGTTTATAGTGAAAACCGACCGTTTTACTCGGTTTTGGGAGAATCTTCAAGCTGTATGACCGGGAATGGGAGGAGTAATCAGTATCTGACCGGTTTAGATGCTTTTCGGATCAAGAAACGGATAATTGATGGTCCACCTGAAATTTTGATGGAGCGGAGACAACGGCGAATGATTAAAAACCGCGAATCTGCGGCTCGGTCTCGAGCCCGGAGACAAGCTTATACTGTGGAACTGGAGTTGGAATTGAACAACCTCACGGAAGAAAACACGAAGCTGAAGGAAATTGTGGAGGAAAATGAGAAGAAAAGAAGACAAGAGATAATAAGTAGAAGCAAACAAGTGACTAAAGAGAAGAGCGGAGACAAATTGAGAAAGATTCGGAGGATGGCCAGTGCCGGGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008134 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

331

Amino Acids

37.66

Weight (kDa)

6.3

Isoelectric Point (pI)

61.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	248 - 298	8.9e-09	Basic region leucine zipper
bZIP_1	PF00170	249 - 301	1.7e-11	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44460
fragaria_vesca	FvH4_3g24780 FvH4_3g24800
malus_domestica	MD03G1143300.v1.1
prunus_persica	Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0044361 RchiOBHm_Chr5g0044371
rosa_laevigata	RLG00000034268 RLG00000034269
rosa_multiflora	Rmu_sc0004741.1_g000007 Rmu_sc0004741.1_g000008
rosa_roxburghii	Rroxscaffold_1G00036580 Rroxscaffold_1G00036600
rosa_rugosa	Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700
rosa_samantha	Rh5AG297900 Rh5AG298100 Rh5BG305300 Rh5BG305500 Rh5CG332300 Rh5CG332500 Rh5DG314500 Rh5DG314700
rosa_wichuraiana	Rw5G027580 Rw5G027590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	528
AccBSI	CCGCTC	2 cut(s)	745, 948
AccI	GTMKAC	2 cut(s)	39, 330
AccII	CGCG	1 cut(s)	774
AciI	CCGC	8 cut(s)	68, 159, 272, 402, 745, 772, 782, 948
AclI	AACGTT	1 cut(s)	80
AclWI	GGATC	1 cut(s)	707
AcoI	YGGCCR	1 cut(s)	978
AcsI	RAATTY	3 cut(s)	144, 385, 732
AcuI	CTGAAG	1 cut(s)	887
AfaI	GTAC	2 cut(s)	363, 477
AfiI	CCNNNNNNNGG	4 cut(s)	287, 539, 657, 987
AgeI	ACCGGT	3 cut(s)	100, 585, 680
AgsI	TTSAA	4 cut(s)	221, 490, 639, 838
AjiI	CACGTC	2 cut(s)	37, 284
AloI	GAACNNNNNNTCC	2 cut(s)	496, 528
AluBI	AGCT	4 cut(s)	168, 642, 809, 865
AluI	AGCT	4 cut(s)	168, 642, 809, 865
Alw26I	GTCTC	6 cut(s)	14, 103, 742, 795, 796, 945
AlwI	GGATC	1 cut(s)	707
AlwNI	CAGNNNCTG	1 cut(s)	676
Ama87I	CYCGRG	4 cut(s)	344, 446, 533, 792
AoxI	GGCC	1 cut(s)	978
ApeKI	GCWGC	1 cut(s)	277
ApoI	RAATTY	3 cut(s)	144, 385, 732
AsiGI	ACCGGT	3 cut(s)	100, 585, 680
Asp700I	GAANNNNTTC	1 cut(s)	411
AspS9I	GGNCC	1 cut(s)	722
AsuC2I	CCSGG	3 cut(s)	652, 799, 988
AsuHPI	GGTGA	2 cut(s)	446, 590
AsuII	TTCGAA	2 cut(s)	12, 26
AvaI	CYCGRG	4 cut(s)	344, 446, 533, 792
AvaII	GGWCC	1 cut(s)	722
BalI	TGGCCA	1 cut(s)	980
BanII	GRGCYC	2 cut(s)	250, 799
BbsI	GAAGAC	2 cut(s)	497, 907
BbvI	GCAGC	1 cut(s)	264
BccI	CCATC	3 cut(s)	713, 733, 970
BceAI	ACGGC	1 cut(s)	770
BcnI	CCSGG	3 cut(s)	652, 799, 988
BcoDI	GTCTC	6 cut(s)	14, 103, 742, 795, 796, 945
BfaI	CTAG	1 cut(s)	197
BisI	GCNGC	2 cut(s)	278, 783
BlsI	GCNGC	2 cut(s)	279, 784
Bme1390I	CCNGG	3 cut(s)	652, 799, 988
Bme18I	GGWCC	1 cut(s)	722
BmeT110I	CYCGRG	4 cut(s)	344, 446, 533, 792
BmgBI	CACGTC	2 cut(s)	37, 284
BmgT120I	GGNCC	1 cut(s)	722
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	3 cut(s)	652, 799, 988
BmsI	GCATC	1 cut(s)	679
BpiI	GAAGAC	2 cut(s)	497, 907
BpmI	CTGGAG	1 cut(s)	845
Bpu14I	TTCGAA	2 cut(s)	12, 26
BpuMI	CCSGG	3 cut(s)	652, 799, 988
BsaI	GGTCTC	1 cut(s)	795
BsaJI	CCNNGG	1 cut(s)	430
BsaWI	WCCGGW	4 cut(s)	100, 389, 585, 680
Bsc4I	CCNNNNNNNGG	4 cut(s)	287, 539, 657, 987
Bse118I	RCCGGY	5 cut(s)	100, 268, 417, 585, 680
Bse1I	ACTGG	2 cut(s)	828, 981
BseDI	CCNNGG	1 cut(s)	430
BseGI	GGATG	3 cut(s)	370, 510, 981
BseLI	CCNNNNNNNGG	4 cut(s)	287, 539, 657, 987
BseNI	ACTGG	2 cut(s)	828, 981
BseRI	GAGGAG	2 cut(s)	107, 676
BseXI	GCAGC	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	774
Bsh1285I	CGRYCG	3 cut(s)	330, 590, 611
BshFI	GGCC	1 cut(s)	980
BshTI	ACCGGT	3 cut(s)	100, 585, 680
BsiEI	CGRYCG	3 cut(s)	330, 590, 611
BsiHKCI	CYCGRG	4 cut(s)	344, 446, 533, 792
BsiSI	CCGG	9 cut(s)	101, 269, 390, 418, 586, 651, 681, 799, 987
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	4 cut(s)	287, 539, 657, 987
BsmAI	GTCTC	6 cut(s)	14, 103, 742, 795, 796, 945
BsmFI	GGGAC	1 cut(s)	283
BsnI	GGCC	1 cut(s)	980
Bso31I	GGTCTC	1 cut(s)	795
BsoBI	CYCGRG	4 cut(s)	344, 446, 533, 792
Bsp119I	TTCGAA	2 cut(s)	12, 26
Bsp1286I	GDGCHC	2 cut(s)	250, 799
Bsp1407I	TGTACA	2 cut(s)	361, 475
Bsp143I	GATC	2 cut(s)	438, 699
BspACI	CCGC	8 cut(s)	68, 159, 272, 402, 745, 772, 782, 948
BspANI	GGCC	1 cut(s)	980
BspFNI	CGCG	1 cut(s)	774
BspLI	GGNNCC	1 cut(s)	99
BspPI	GGATC	1 cut(s)	707
BspQI	GCTCTTC	1 cut(s)	938
BspT104I	TTCGAA	2 cut(s)	12, 26
BspTNI	GGTCTC	1 cut(s)	795
BsrBI	CCGCTC	2 cut(s)	745, 948
BsrFI	RCCGGY	5 cut(s)	100, 268, 417, 585, 680
BsrGI	TGTACA	2 cut(s)	361, 475
BsrI	ACTGG	2 cut(s)	828, 981
BssAI	RCCGGY	5 cut(s)	100, 268, 417, 585, 680
BssECI	CCNNGG	1 cut(s)	430
BssMI	GATC	2 cut(s)	438, 699
BssT1I	CCWWGG	1 cut(s)	430
Bst4CI	ACNGT	7 cut(s)	217, 328, 359, 378, 486, 612, 817
Bst6I	CTCTTC	1 cut(s)	938
BstAUI	TGTACA	2 cut(s)	361, 475
BstBI	TTCGAA	2 cut(s)	12, 26
BstC8I	GCNNGC	2 cut(s)	270, 419
BstF5I	GGATG	3 cut(s)	370, 510, 981
BstFNI	CGCG	1 cut(s)	774
BstKTI	GATC	2 cut(s)	441, 702
BstMAI	GTCTC	6 cut(s)	14, 103, 742, 795, 796, 945
BstMBI	GATC	2 cut(s)	438, 699
BstMCI	CGRYCG	3 cut(s)	330, 590, 611
BstMWI	GCNNNNNNNGC	2 cut(s)	165, 274
BstSCI	CCNGG	3 cut(s)	650, 797, 986
BstUI	CGCG	1 cut(s)	774
BstV1I	GCAGC	1 cut(s)	264
BstV2I	GAAGAC	2 cut(s)	497, 907
BsuRI	GGCC	1 cut(s)	980
BtgZI	GCGATG	1 cut(s)	191
BtrI	CACGTC	2 cut(s)	37, 284
BtsCI	GGATG	3 cut(s)	370, 510, 981
BtsIMutI	CAGTG	1 cut(s)	988
Cac8I	GCNNGC	2 cut(s)	270, 419
CaiI	CAGNNNCTG	1 cut(s)	676
Cfr10I	RCCGGY	5 cut(s)	100, 268, 417, 585, 680
Cfr13I	GGNCC	1 cut(s)	722
Csp6I	GTAC	2 cut(s)	362, 476
CspAI	ACCGGT	3 cut(s)	100, 585, 680
CviAII	CATG	1 cut(s)	184
CviQI	GTAC	2 cut(s)	362, 476
DpnI	GATC	2 cut(s)	440, 701
DpnII	GATC	2 cut(s)	438, 699
EaeI	YGGCCR	1 cut(s)	978
Eam1104I	CTCTTC	1 cut(s)	938
EarI	CTCTTC	1 cut(s)	938
EciI	GGCGGA	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	430
Eco24I	GRGCYC	2 cut(s)	250, 799
Eco31I	GGTCTC	1 cut(s)	795
Eco47I	GGWCC	1 cut(s)	722
Eco57I	CTGAAG	1 cut(s)	887
Eco88I	CYCGRG	4 cut(s)	344, 446, 533, 792
EcoRI	GAATTC	1 cut(s)	385
EcoT14I	CCWWGG	1 cut(s)	430
EcoT38I	GRGCYC	2 cut(s)	250, 799
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	1 cut(s)	187
FaiI	YATR	7 cut(s)	185, 316, 528, 576, 597, 647, 813
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	1 cut(s)	183
FblI	GTMKAC	2 cut(s)	39, 330
Fnu4HI	GCNGC	2 cut(s)	278, 783
FokI	GGATG	3 cut(s)	357, 517, 988
FriOI	GRGCYC	2 cut(s)	250, 799
Fsp4HI	GCNGC	2 cut(s)	278, 783
FspBI	CTAG	1 cut(s)	197
GluI	GCNGC	2 cut(s)	278, 783
GsuI	CTGGAG	1 cut(s)	845
HaeIII	GGCC	1 cut(s)	980
HapII	CCGG	9 cut(s)	101, 269, 390, 418, 586, 651, 681, 799, 987
Hin1II	CATG	1 cut(s)	187
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HindIII	AAGCTT	1 cut(s)	807
HinfI	GANTC	4 cut(s)	14, 632, 776, 967
HpaII	CCGG	9 cut(s)	101, 269, 390, 418, 586, 651, 681, 799, 987
HphI	GGTGA	2 cut(s)	446, 590
Hpy166II	GTNNAC	6 cut(s)	40, 210, 331, 362, 551, 725
Hpy188I	TCNGA	8 cut(s)	19, 91, 150, 517, 561, 678, 699, 972
Hpy188III	TCNNGA	5 cut(s)	137, 346, 446, 703, 792
Hpy8I	GTNNAC	6 cut(s)	40, 210, 331, 362, 551, 725
Hpy99I	CGWCG	4 cut(s)	260, 335, 382, 385
HpyAV	CCTTC	2 cut(s)	230, 862
HpyCH4III	ACNGT	7 cut(s)	217, 328, 359, 378, 486, 612, 817
HpyCH4IV	ACGT	3 cut(s)	36, 80, 283
HpyCH4V	TGCA	2 cut(s)	76, 318
HpyF10VI	GCNNNNNNNGC	2 cut(s)	165, 274
HpySE526I	ACGT	3 cut(s)	36, 80, 283
Hsp92II	CATG	1 cut(s)	187
KroI	GCCGGC	2 cut(s)	268, 417
KroNI	GCCGGC	2 cut(s)	270, 419
Kzo9I	GATC	2 cut(s)	438, 699
LguI	GCTCTTC	1 cut(s)	938
LmnI	GCTCC	2 cut(s)	173, 742
Lsp1109I	GCAGC	1 cut(s)	264
LweI	GCATC	1 cut(s)	679
MaeI	CTAG	1 cut(s)	197
MaeII	ACGT	3 cut(s)	36, 80, 283
MaeIII	GTNAC	2 cut(s)	126, 931
MalI	GATC	2 cut(s)	440, 701
MbiI	CCGCTC	2 cut(s)	745, 948
MboI	GATC	2 cut(s)	438, 699
MboII	GAAGA	7 cut(s)	233, 502, 627, 863, 904, 912, 955
MhlI	GDGCHC	2 cut(s)	250, 799
MlsI	TGGCCA	1 cut(s)	980
MluCI	AATT	8 cut(s)	144, 385, 571, 714, 732, 833, 873, 956
MluNI	TGGCCA	1 cut(s)	980
MmeI	TCCRAC	2 cut(s)	69, 810
Mox20I	TGGCCA	1 cut(s)	980
MroNI	GCCGGC	2 cut(s)	268, 417
MroXI	GAANNNNTTC	1 cut(s)	411
MscI	TGGCCA	1 cut(s)	980
MseI	TTAA	2 cut(s)	462, 765
Msp20I	TGGCCA	1 cut(s)	980
MspI	CCGG	9 cut(s)	101, 269, 390, 418, 586, 651, 681, 799, 987
MspR9I	CCNGG	3 cut(s)	652, 799, 988
MvnI	CGCG	1 cut(s)	774
MwoI	GCNNNNNNNGC	2 cut(s)	165, 274
NaeI	GCCGGC	2 cut(s)	270, 419
NciI	CCSGG	3 cut(s)	652, 799, 988
NdeII	GATC	2 cut(s)	438, 699
NgoMIV	GCCGGC	2 cut(s)	268, 417
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	1 cut(s)	99
NmuCI	GTSAC	2 cut(s)	126, 931
NspV	TTCGAA	2 cut(s)	12, 26
PaeR7I	CTCGAG	3 cut(s)	344, 446, 792
PciSI	GCTCTTC	1 cut(s)	938
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PdiI	GCCGGC	2 cut(s)	270, 419
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	4 cut(s)	14, 632, 776, 967
PinAI	ACCGGT	3 cut(s)	100, 585, 680
PkrI	GCNGC	2 cut(s)	279, 784
PsiI	TTATAA	1 cut(s)	528
Psp1406I	AACGTT	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	99
PspPI	GGNCC	1 cut(s)	722
PstNI	CAGNNNCTG	1 cut(s)	676
RsaI	GTAC	2 cut(s)	363, 477
RsaNI	GTAC	2 cut(s)	362, 476
SalI	GTCGAC	1 cut(s)	329
SapI	GCTCTTC	1 cut(s)	938
SaqAI	TTAA	2 cut(s)	462, 765
SatI	GCNGC	2 cut(s)	278, 783
Sau3AI	GATC	2 cut(s)	438, 699
Sau96I	GGNCC	1 cut(s)	722
ScrFI	CCNGG	3 cut(s)	652, 799, 988
SduI	GDGCHC	2 cut(s)	250, 799
SfaNI	GCATC	1 cut(s)	679
Sfr274I	CTCGAG	3 cut(s)	344, 446, 792
SfuI	TTCGAA	2 cut(s)	12, 26
SinI	GGWCC	1 cut(s)	722
SlaI	CTCGAG	3 cut(s)	344, 446, 792
SmlI	CTYRAG	3 cut(s)	344, 446, 792
SmoI	CTYRAG	3 cut(s)	344, 446, 792
Sse9I	AATT	8 cut(s)	144, 385, 571, 714, 732, 833, 873, 956
SsiI	CCGC	8 cut(s)	68, 159, 272, 402, 745, 772, 782, 948
SspI	AATATT	1 cut(s)	412
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	3 cut(s)	650, 797, 986
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	7 cut(s)	217, 328, 359, 378, 486, 612, 817
TaiI	ACGT	3 cut(s)	39, 83, 286
TaqI	TCGA	9 cut(s)	12, 26, 119, 330, 345, 383, 447, 509, 793
TaqII	GACCGA	1 cut(s)	777
TasI	AATT	8 cut(s)	144, 385, 571, 714, 732, 833, 873, 956
TatI	WGTACW	2 cut(s)	361, 475
TauI	GCSGC	1 cut(s)	785
TfiI	GAWTC	4 cut(s)	14, 632, 776, 967
Tru1I	TTAA	2 cut(s)	462, 765
Tru9I	TTAA	2 cut(s)	462, 765
TscAI	CASTG	1 cut(s)	988
TseFI	GTSAC	2 cut(s)	126, 931
TseI	GCWGC	1 cut(s)	277
Tsp45I	GTSAC	2 cut(s)	126, 931
TspDTI	ATGAA	2 cut(s)	167, 194
TspGWI	ACGGA	3 cut(s)	273, 724, 863
TspRI	CASTG	1 cut(s)	988
VpaK11BI	GGWCC	1 cut(s)	722
XapI	RAATTY	3 cut(s)	144, 385, 732
XcmI	CCANNNNNNNNNTGG	1 cut(s)	572
XhoI	CTCGAG	3 cut(s)	344, 446, 792
XmiI	GTMKAC	2 cut(s)	39, 330
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.