Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004462

Physical Location & Seq

Genomic Coordinates Forward (+)

40332263 .. 40334511

Gene Structure 2249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG314700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGCTAATAACAATGGTAGCTTCTGATGAATCTGGAGGCCTTGGTTATGACCACAATGATGATAGTAATGATGCTAAACCTCAACCACCACCAACACAGCACGAAAATGGGGAATCATCAAAACAGAATTCGATACTCTCACTTACTATTGATGAAATTCAAAGCAAGAGTGGGAAGAGTTTTGGGTCCATGAACATGGATGAATTCCTTGCCAACATATGGAGTGCTGATGAAAATCAAGTTTCTTCAGAACAACCCAACCAAGGTGATCTGGATGACCCTGCCAATGGGAAAGACACAACTTCAAAGCCTGCCTCTCTTTCACGGCAGGGATCATTCTCCATTCCTACCCCACTCTGCAAGAAAACTGTGGATGAGGTATGGTCAGAGATCGACAAAACTCGACCACCACCCCTGCCTAACTACATGAGTAATCTTGATCATCCCCAGAGCCAATCAACCATTGGAGAAATAACTCTGGAAGATTTCCTAGTAAAAGCTGGTGTAGTTCAAGAATCACCTTCTCAGAACCGAATGGGAAGTGACCCAATTCATCCACAAGGTGGTGACGCCAACAATTCTAATATGGCAACTAGCAGTAGCATGTATGTGGGTACAAGTTCTGAAATGGGGAATAATGTGATTGCTTCAGGACATTTGAATCCCCAAAATGCTGTGCCAAACAATCTGCCTGGAAATAGATATGCGATTGCTGGATATCCAATTTTTGGGCAGAATAAAATGATTGTGGGAAATGCATCTTTTTGTACCAGTAATGAAACTGAGAAACGTCACAGTTTGCCAGAATCTAGTGGGACAAAGAACAAGAAGAGGATGATTGATGGTCCACTGGAGGTAGCAGTGGAGCGGAGGCAACGAAGGATGATCAAAAATCGAGAGTCAGCAGCTCGGTCTCGTGCAAGGAAACAGGCATACACTGTGGAACTAGAAGCTGAGGTGAATCAACTTGAAGACGAGAATGAAAAGCTGAAGCAAACAGTGGAGGGAATCGAACAGAGGCGAAAACAAGAGGTGATGGGAAGGAAACAATCCACAAAAGCGCAAAGGTTGGCAGCAAAGTTGAGGACAATGAGGAGGACTGTTAGCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008134 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

370

Amino Acids

40.65

Weight (kDa)

5.97

Isoelectric Point (pI)

58.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	289 - 339	3.6e-11	Basic region leucine zipper
bZIP_1	PF00170	290 - 342	1.2e-14	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44460
fragaria_vesca	FvH4_3g24780 FvH4_3g24800
malus_domestica	MD03G1143300.v1.1
prunus_persica	Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0044361 RchiOBHm_Chr5g0044371
rosa_laevigata	RLG00000034268 RLG00000034269
rosa_multiflora	Rmu_sc0004741.1_g000007 Rmu_sc0004741.1_g000008
rosa_roxburghii	Rroxscaffold_1G00036580 Rroxscaffold_1G00036600
rosa_rugosa	Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700
rosa_samantha	Rh5AG297900 Rh5AG298100 Rh5BG305300 Rh5BG305500 Rh5CG332300 Rh5CG332500 Rh5DG314500 Rh5DG314700
rosa_wichuraiana	Rw5G027580 Rw5G027590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	219, 563, 728
AccBSI	CCGCTC	1 cut(s)	868
AciI	CCGC	1 cut(s)	868
AclWI	GGATC	1 cut(s)	340
AcsI	RAATTY	3 cut(s)	127, 156, 203
AcuI	CTGAAG	3 cut(s)	231, 633, 1010
AcyI	GRCGYC	1 cut(s)	570
AdeI	CACNNNGTG	1 cut(s)	563
AfaI	GTAC	2 cut(s)	616, 769
AfeI	AGCGCT	1 cut(s)	1108
AfiI	CCNNNNNNNGG	5 cut(s)	219, 263, 287, 563, 728
AgsI	TTSAA	5 cut(s)	161, 306, 512, 661, 971
AjnI	CCWGG	1 cut(s)	691
AluBI	AGCT	5 cut(s)	20, 500, 908, 953, 988
AluI	AGCT	5 cut(s)	20, 500, 908, 953, 988
Alw26I	GTCTC	1 cut(s)	918
AlwI	GGATC	1 cut(s)	340
Aor51HI	AGCGCT	1 cut(s)	1108
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	2 cut(s)	905, 1073
ApoI	RAATTY	3 cut(s)	127, 156, 203
AspLEI	GCGC	2 cut(s)	1063, 1109
AspS9I	GGNCC	2 cut(s)	186, 845
AsuHPI	GGTGA	5 cut(s)	278, 510, 578, 970, 1045
AvaII	GGWCC	2 cut(s)	186, 845
BauI	CACGAG	1 cut(s)	915
BbsI	GAAGAC	1 cut(s)	978
BbvCI	CCTCAGC	1 cut(s)	954
BbvI	GCAGC	2 cut(s)	917, 1085
BccI	CCATC	2 cut(s)	836, 1030
BceAI	ACGGC	1 cut(s)	341
BciT130I	CCWGG	1 cut(s)	693
BclI	TGATCA	2 cut(s)	439, 885
BcoDI	GTCTC	1 cut(s)	918
BfaI	CTAG	4 cut(s)	491, 594, 810, 947
BfoI	RGCGCY	1 cut(s)	1110
BisI	GCNGC	2 cut(s)	906, 1074
BlsI	GCNGC	2 cut(s)	907, 1075
Bme1390I	CCNGG	1 cut(s)	693
Bme18I	GGWCC	2 cut(s)	186, 845
BmgT120I	GGNCC	2 cut(s)	186, 845
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	693
BmsI	GCATC	2 cut(s)	61, 767
BpiI	GAAGAC	1 cut(s)	978
BpmI	CTGGAG	2 cut(s)	54, 872
Bpu10I	CCTNAGC	1 cut(s)	954
BsaBI	GATNNNNATC	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	570
BsaI	GGTCTC	1 cut(s)	918
BsaJI	CCNNGG	2 cut(s)	40, 262
Bsc4I	CCNNNNNNNGG	5 cut(s)	219, 263, 287, 563, 728
Bse1I	ACTGG	2 cut(s)	771, 855
Bse8I	GATNNNNATC	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	693
BseDI	CCNNGG	2 cut(s)	40, 262
BseGI	GGATG	7 cut(s)	205, 280, 379, 442, 553, 840, 888
BseJI	GATNNNNATC	1 cut(s)	234
BseLI	CCNNNNNNNGG	5 cut(s)	219, 263, 287, 563, 728
BseMII	CTCAG	3 cut(s)	539, 774, 945
BseNI	ACTGG	2 cut(s)	771, 855
BseRI	GAGGAG	1 cut(s)	1108
BseXI	GCAGC	2 cut(s)	917, 1085
BshFI	GGCC	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	829
BslI	CCNNNNNNNGG	5 cut(s)	219, 263, 287, 563, 728
BsmAI	GTCTC	1 cut(s)	918
BsmFI	GGGAC	1 cut(s)	829
BsnI	GGCC	1 cut(s)	39
Bso31I	GGTCTC	1 cut(s)	918
Bsp143I	GATC	5 cut(s)	268, 332, 390, 439, 885
BspACI	CCGC	1 cut(s)	868
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	3 cut(s)	538, 775, 946
BspLI	GGNNCC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	340
BspTNI	GGTCTC	1 cut(s)	918
BsrBI	CCGCTC	1 cut(s)	868
BsrI	ACTGG	2 cut(s)	771, 855
BssECI	CCNNGG	2 cut(s)	40, 262
BssMI	GATC	5 cut(s)	268, 332, 390, 439, 885
BssNI	GRCGYC	1 cut(s)	570
BssSI	CACGAG	1 cut(s)	915
BssT1I	CCWWGG	2 cut(s)	40, 262
Bst2BI	CACGAG	1 cut(s)	915
Bst2UI	CCWGG	1 cut(s)	693
Bst4CI	ACNGT	5 cut(s)	370, 797, 940, 1000, 1102
Bst6I	CTCTTC	2 cut(s)	170, 824
BstACI	GRCGYC	1 cut(s)	570
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	3 cut(s)	525, 783, 954
BstF5I	GGATG	7 cut(s)	205, 280, 379, 442, 553, 840, 888
BstH2I	RGCGCY	1 cut(s)	1110
BstHHI	GCGC	2 cut(s)	1063, 1109
BstKTI	GATC	5 cut(s)	271, 335, 393, 442, 888
BstMAI	GTCTC	1 cut(s)	918
BstMBI	GATC	5 cut(s)	268, 332, 390, 439, 885
BstNI	CCWGG	1 cut(s)	693
BstNSI	RCATGY	1 cut(s)	607
BstSCI	CCNGG	1 cut(s)	691
BstV1I	GCAGC	2 cut(s)	917, 1085
BstV2I	GAAGAC	1 cut(s)	978
BstXI	CCANNNNNNTGG	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	39
BtsCI	GGATG	7 cut(s)	205, 280, 379, 442, 553, 840, 888
BtsI	GCAGTG	1 cut(s)	867
BtsIMutI	CAGTG	4 cut(s)	848, 867, 936, 1005
Cac8I	GCNNGC	1 cut(s)	312
CfoI	GCGC	2 cut(s)	1063, 1109
Cfr13I	GGNCC	2 cut(s)	186, 845
CseI	GACGC	1 cut(s)	578
Csp6I	GTAC	2 cut(s)	615, 768
CviAII	CATG	4 cut(s)	190, 196, 427, 604
CviJI	RGCY	8 cut(s)	20, 39, 310, 453, 500, 908, 953, 988
CviKI_1	RGCY	8 cut(s)	20, 39, 310, 453, 500, 908, 953, 988
CviQI	GTAC	2 cut(s)	615, 768
DdeI	CTNAG	3 cut(s)	525, 783, 954
DpnI	GATC	5 cut(s)	270, 334, 392, 441, 887
DpnII	GATC	5 cut(s)	268, 332, 390, 439, 885
DraIII	CACNNNGTG	1 cut(s)	563
Eam1104I	CTCTTC	2 cut(s)	170, 824
EarI	CTCTTC	2 cut(s)	170, 824
Eco130I	CCWWGG	2 cut(s)	40, 262
Eco147I	AGGCCT	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	918
Eco32I	GATATC	1 cut(s)	719
Eco47I	GGWCC	2 cut(s)	186, 845
Eco47III	AGCGCT	1 cut(s)	1108
Eco57I	CTGAAG	3 cut(s)	231, 633, 1010
EcoRI	GAATTC	2 cut(s)	127, 203
EcoRII	CCWGG	1 cut(s)	691
EcoRV	GATATC	1 cut(s)	719
EcoT14I	CCWWGG	2 cut(s)	40, 262
EcoT22I	ATGCAT	1 cut(s)	760
ErhI	CCWWGG	2 cut(s)	40, 262
FaeI	CATG	4 cut(s)	193, 199, 430, 607
FaqI	GGGAC	1 cut(s)	829
FatI	CATG	4 cut(s)	189, 195, 426, 603
FauNDI	CATATG	1 cut(s)	218
FbaI	TGATCA	2 cut(s)	439, 885
Fnu4HI	GCNGC	2 cut(s)	906, 1074
FokI	GGATG	7 cut(s)	212, 287, 386, 429, 540, 847, 895
Fsp4HI	GCNGC	2 cut(s)	906, 1074
FspBI	CTAG	4 cut(s)	491, 594, 810, 947
GlaI	GCGC	2 cut(s)	1062, 1108
GluI	GCNGC	2 cut(s)	906, 1074
GsuI	CTGGAG	2 cut(s)	54, 872
HaeII	RGCGCY	1 cut(s)	1110
HaeIII	GGCC	1 cut(s)	39
HgaI	GACGC	1 cut(s)	578
HhaI	GCGC	2 cut(s)	1063, 1109
Hin1I	GRCGYC	1 cut(s)	570
Hin1II	CATG	4 cut(s)	193, 199, 430, 607
Hin6I	GCGC	2 cut(s)	1061, 1107
HinP1I	GCGC	2 cut(s)	1061, 1107
HinfI	GANTC	8 cut(s)	29, 113, 515, 661, 806, 899, 961, 1008
HphI	GGTGA	5 cut(s)	278, 510, 578, 970, 1045
Hpy166II	GTNNAC	1 cut(s)	848
Hpy188I	TCNGA	5 cut(s)	25, 250, 388, 528, 625
Hpy188III	TCNNGA	7 cut(s)	33, 272, 437, 479, 512, 651, 896
Hpy8I	GTNNAC	1 cut(s)	848
HpyAV	CCTTC	3 cut(s)	531, 873, 1035
HpyCH4III	ACNGT	5 cut(s)	370, 797, 940, 1000, 1102
HpyCH4IV	ACGT	1 cut(s)	790
HpyCH4V	TGCA	3 cut(s)	360, 758, 920
HpyF3I	CTNAG	3 cut(s)	525, 783, 954
HpySE526I	ACGT	1 cut(s)	790
Hsp92I	GRCGYC	1 cut(s)	570
Hsp92II	CATG	4 cut(s)	193, 199, 430, 607
HspAI	GCGC	2 cut(s)	1061, 1107
Ksp22I	TGATCA	2 cut(s)	439, 885
Kzo9I	GATC	5 cut(s)	268, 332, 390, 439, 885
LmnI	GCTCC	1 cut(s)	865
Lsp1109I	GCAGC	2 cut(s)	917, 1085
LweI	GCATC	2 cut(s)	61, 767
MaeI	CTAG	4 cut(s)	491, 594, 810, 947
MaeII	ACGT	1 cut(s)	790
MaeIII	GTNAC	3 cut(s)	542, 566, 791
MalI	GATC	5 cut(s)	270, 334, 392, 441, 887
MbiI	CCGCTC	1 cut(s)	868
MboI	GATC	5 cut(s)	268, 332, 390, 439, 885
MboII	GAAGA	5 cut(s)	187, 237, 494, 841, 983
MluCI	AATT	6 cut(s)	127, 156, 203, 549, 577, 723
MlyI	GAGTC	1 cut(s)	908
Mph1103I	ATGCAT	1 cut(s)	760
MslI	CAYNNNNRTG	4 cut(s)	57, 105, 194, 608
MspR9I	CCNGG	1 cut(s)	693
MvaI	CCWGG	1 cut(s)	693
NdeI	CATATG	1 cut(s)	218
NdeII	GATC	5 cut(s)	268, 332, 390, 439, 885
NlaIII	CATG	4 cut(s)	193, 199, 430, 607
NlaIV	GGNNCC	1 cut(s)	187
NmuCI	GTSAC	3 cut(s)	542, 566, 791
NsiI	ATGCAT	1 cut(s)	760
NspI	RCATGY	1 cut(s)	607
PceI	AGGCCT	1 cut(s)	39
PfeI	GAWTC	7 cut(s)	29, 113, 515, 661, 806, 961, 1008
PflMI	CCANNNNNTGG	3 cut(s)	219, 563, 728
PkrI	GCNGC	2 cut(s)	907, 1075
PleI	GAGTC	1 cut(s)	907
PpsI	GAGTC	1 cut(s)	907
Psp6I	CCWGG	1 cut(s)	691
PspGI	CCWGG	1 cut(s)	691
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	2 cut(s)	186, 845
RsaI	GTAC	2 cut(s)	616, 769
RsaNI	GTAC	2 cut(s)	615, 768
RseI	CAYNNNNRTG	4 cut(s)	57, 105, 194, 608
SatI	GCNGC	2 cut(s)	906, 1074
Sau3AI	GATC	5 cut(s)	268, 332, 390, 439, 885
Sau96I	GGNCC	2 cut(s)	186, 845
SchI	GAGTC	1 cut(s)	908
ScrFI	CCNGG	1 cut(s)	693
SfaNI	GCATC	2 cut(s)	61, 767
SinI	GGWCC	2 cut(s)	186, 845
SmiMI	CAYNNNNRTG	4 cut(s)	57, 105, 194, 608
Sse9I	AATT	6 cut(s)	127, 156, 203, 549, 577, 723
SseBI	AGGCCT	1 cut(s)	39
SsiI	CCGC	1 cut(s)	868
SspMI	CTAG	4 cut(s)	491, 594, 810, 947
StuI	AGGCCT	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	691
StyI	CCWWGG	2 cut(s)	40, 262
TaaI	ACNGT	5 cut(s)	370, 797, 940, 1000, 1102
TaiI	ACGT	1 cut(s)	793
TaqI	TCGA	5 cut(s)	131, 393, 403, 895, 1011
TaqII	GACCGA	1 cut(s)	900
TasI	AATT	6 cut(s)	127, 156, 203, 549, 577, 723
TfiI	GAWTC	7 cut(s)	29, 113, 515, 661, 806, 961, 1008
TscAI	CASTG	4 cut(s)	855, 867, 943, 1005
TseFI	GTSAC	3 cut(s)	542, 566, 791
TseI	GCWGC	2 cut(s)	905, 1073
Tsp45I	GTSAC	3 cut(s)	542, 566, 791
TspDTI	ATGAA	8 cut(s)	42, 168, 206, 216, 246, 542, 792, 996
TspRI	CASTG	4 cut(s)	855, 867, 943, 1005
Van91I	CCANNNNNTGG	3 cut(s)	219, 563, 728
VpaK11BI	GGWCC	2 cut(s)	186, 845
XapI	RAATTY	3 cut(s)	127, 156, 203
XceI	RCATGY	1 cut(s)	607
XcmI	CCANNNNNNNNNTGG	1 cut(s)	461
XspI	CTAG	4 cut(s)	491, 594, 810, 947
Zsp2I	ATGCAT	1 cut(s)	760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.