Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004462

Physical Location & Seq

Genomic Coordinates Forward (+)

39685293 .. 39687521

Gene Structure 2229 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034269

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGTAGCTTCTGATGAATCTGGAGGCCTTGGTTATGACCAAAATGGTGATAGTAATGATGCTAAACCTCAGCCACCACCATCACAGCACGAAAATGGGGAATCATCAAAACAGAATTCGATATTCTCGCTTACTCTTGATGAAATTCAAAGCAAGAGTGGGAAGAGTTTTGGGTCCATGAACATGGATGAATTCCTTGCCAACATATGGAGTGCTGATGAAAATCAAGTTTCTTCAGAACAGCCCAACCAAGGTGATCTGGATGACCATGCTGATGGGAAAGACACAACTTCAAAGCCTGCCTCTCTTTCATGGCAGGGATCATTCTCCATTCCTACCCCACTCTGCAAGAAAACTGTGGATGAGGTATGGTCAGAGATCGACAAAACTCAACCACCACCCCCGCCTAATGACATGAGTAATCTTGATCATCCCCAGCGCCATTCAACCATAGGAGAAATAACTCTGGAAGATTTCCTAGTAAAAGCTGGTGTAGTTCAAGAATCACCTTCTCAGAACCGAATGGAAAGTGACCCAATTCATCCACAAGGTGGTGATGCCAACAACTCTAATATGGCAACTAGCAGTAGCATGTATGTGGGTACAAGTTCCAAAATGGGGAATAATGTGATTACTTCAGGACATTTGAATCCCCAAAATGCTGTGCCAAACAATCTGTCTGGAAATGGATATGCAATTGCTGGATATCCAATTTTTGGACAGAATAAAATGATTGTGGGAAATGCATCTTTTGGTACCTGTAATGAAATTGAGAAATGTCACAGTTTGCCAGAATCTAGTGGGACAAAGAACAAGAAGAGGATGATTGATGGTCCACTGGAGGTAGCAGTGGAGCGGAGGCAACGAAGGATGATCAAAAATCGAGAGTCAGCAGCTCGGTCTCGTGCAAGGAAACAGGCATACACTGTGGAACTAGAAGCTGAGGTGAATCAACTTGAAGACGAGAATGAAAAGCTGAAGCAAACAGTGGAGGGAATCGAACAGAGGCGAAAACAAGAGGTAATGGGAAGGAAACAATCCACAAAAGCGCAAAGGTTGGCAGCAAAGTTGAGGACAATGAGGAGGACTGTTAGCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008134 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

367

Amino Acids

40.12

Weight (kDa)

5.64

Isoelectric Point (pI)

53.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	285 - 335	3.5e-11	Basic region leucine zipper
bZIP_1	PF00170	286 - 338	1.2e-14	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44460
fragaria_vesca	FvH4_3g24780 FvH4_3g24800
malus_domestica	MD03G1143300.v1.1
prunus_persica	Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0044361 RchiOBHm_Chr5g0044371
rosa_laevigata	RLG00000034268 RLG00000034269
rosa_multiflora	Rmu_sc0004741.1_g000007 Rmu_sc0004741.1_g000008
rosa_roxburghii	Rroxscaffold_1G00036580 Rroxscaffold_1G00036600
rosa_rugosa	Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700
rosa_samantha	Rh5AG297900 Rh5AG298100 Rh5BG305300 Rh5BG305500 Rh5CG332300 Rh5CG332500 Rh5DG314500 Rh5DG314700
rosa_wichuraiana	Rw5G027580 Rw5G027590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	755
AccB1I	GGYRCC	1 cut(s)	755
AccB7I	CCANNNNNTGG	3 cut(s)	207, 551, 716
AccBSI	CCGCTC	1 cut(s)	856
AciI	CCGC	2 cut(s)	404, 856
AclWI	GGATC	1 cut(s)	328
AcsI	RAATTY	3 cut(s)	115, 144, 191
AcuI	CTGAAG	3 cut(s)	219, 621, 998
AdeI	CACNNNGTG	1 cut(s)	551
AfaI	GTAC	2 cut(s)	604, 757
AfeI	AGCGCT	1 cut(s)	1096
AfiI	CCNNNNNNNGG	5 cut(s)	207, 251, 551, 618, 716
AgsI	TTSAA	6 cut(s)	149, 294, 447, 500, 649, 959
AluBI	AGCT	5 cut(s)	8, 488, 896, 941, 976
AluI	AGCT	5 cut(s)	8, 488, 896, 941, 976
Alw26I	GTCTC	1 cut(s)	906
AlwI	GGATC	1 cut(s)	328
Aor51HI	AGCGCT	1 cut(s)	1096
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	2 cut(s)	893, 1061
ApoI	RAATTY	3 cut(s)	115, 144, 191
ArsI	GACNNNNNNTTYG	2 cut(s)	662, 694
Asp718I	GGTACC	1 cut(s)	755
AspLEI	GCGC	3 cut(s)	441, 1051, 1097
AspS9I	GGNCC	2 cut(s)	174, 833
AsuHPI	GGTGA	5 cut(s)	59, 266, 498, 566, 958
AvaII	GGWCC	2 cut(s)	174, 833
BanI	GGYRCC	1 cut(s)	755
BauI	CACGAG	1 cut(s)	903
BbsI	GAAGAC	1 cut(s)	966
BbvCI	CCTCAGC	2 cut(s)	69, 942
BbvI	GCAGC	2 cut(s)	905, 1073
BccI	CCATC	3 cut(s)	88, 269, 824
BclI	TGATCA	2 cut(s)	427, 873
BcoDI	GTCTC	1 cut(s)	906
BfaI	CTAG	4 cut(s)	479, 582, 798, 935
BfoI	RGCGCY	2 cut(s)	442, 1098
BisI	GCNGC	2 cut(s)	894, 1062
BlsI	GCNGC	2 cut(s)	895, 1063
Bme18I	GGWCC	2 cut(s)	174, 833
BmgT120I	GGNCC	2 cut(s)	174, 833
BmiI	GGNNCC	2 cut(s)	175, 757
BmsI	GCATC	3 cut(s)	49, 547, 755
BpiI	GAAGAC	1 cut(s)	966
BpmI	CTGGAG	2 cut(s)	42, 860
Bpu10I	CCTNAGC	2 cut(s)	69, 942
BsaBI	GATNNNNATC	1 cut(s)	222
BsaI	GGTCTC	1 cut(s)	906
BsaJI	CCNNGG	2 cut(s)	28, 250
Bsc4I	CCNNNNNNNGG	5 cut(s)	207, 251, 551, 618, 716
Bse1I	ACTGG	1 cut(s)	843
Bse8I	GATNNNNATC	1 cut(s)	222
BseDI	CCNNGG	2 cut(s)	28, 250
BseGI	GGATG	7 cut(s)	193, 268, 367, 430, 541, 828, 876
BseJI	GATNNNNATC	1 cut(s)	222
BseLI	CCNNNNNNNGG	5 cut(s)	207, 251, 551, 618, 716
BseMII	CTCAG	3 cut(s)	83, 527, 933
BseNI	ACTGG	1 cut(s)	843
BseRI	GAGGAG	1 cut(s)	1096
BseXI	GCAGC	2 cut(s)	905, 1073
BseYI	CCCAGC	1 cut(s)	435
BshFI	GGCC	1 cut(s)	27
BshNI	GGYRCC	1 cut(s)	755
BslFI	GGGAC	1 cut(s)	817
BslI	CCNNNNNNNGG	5 cut(s)	207, 251, 551, 618, 716
BsmAI	GTCTC	1 cut(s)	906
BsmFI	GGGAC	1 cut(s)	817
BsnI	GGCC	1 cut(s)	27
Bso31I	GGTCTC	1 cut(s)	906
Bsp143I	GATC	5 cut(s)	256, 320, 378, 427, 873
BspACI	CCGC	2 cut(s)	404, 856
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	3 cut(s)	82, 526, 934
BspLI	GGNNCC	2 cut(s)	175, 757
BspPI	GGATC	1 cut(s)	328
BspT107I	GGYRCC	1 cut(s)	755
BspTNI	GGTCTC	1 cut(s)	906
BsrBI	CCGCTC	1 cut(s)	856
BsrI	ACTGG	1 cut(s)	843
BssECI	CCNNGG	2 cut(s)	28, 250
BssMI	GATC	5 cut(s)	256, 320, 378, 427, 873
BssSI	CACGAG	1 cut(s)	903
BssT1I	CCWWGG	2 cut(s)	28, 250
Bst2BI	CACGAG	1 cut(s)	903
Bst4CI	ACNGT	5 cut(s)	358, 785, 928, 988, 1090
Bst6I	CTCTTC	2 cut(s)	158, 812
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	3 cut(s)	69, 513, 942
BstF5I	GGATG	7 cut(s)	193, 268, 367, 430, 541, 828, 876
BstH2I	RGCGCY	2 cut(s)	442, 1098
BstHHI	GCGC	3 cut(s)	441, 1051, 1097
BstKTI	GATC	5 cut(s)	259, 323, 381, 430, 876
BstMAI	GTCTC	1 cut(s)	906
BstMBI	GATC	5 cut(s)	256, 320, 378, 427, 873
BstNSI	RCATGY	1 cut(s)	595
BstV1I	GCAGC	2 cut(s)	905, 1073
BstV2I	GAAGAC	1 cut(s)	966
BstXI	CCANNNNNNTGG	2 cut(s)	184, 275
BsuRI	GGCC	1 cut(s)	27
BtsCI	GGATG	7 cut(s)	193, 268, 367, 430, 541, 828, 876
BtsI	GCAGTG	1 cut(s)	855
BtsIMutI	CAGTG	4 cut(s)	836, 855, 924, 993
Cac8I	GCNNGC	1 cut(s)	300
CfoI	GCGC	3 cut(s)	441, 1051, 1097
Cfr13I	GGNCC	2 cut(s)	174, 833
Csp6I	GTAC	2 cut(s)	603, 756
CviAII	CATG	6 cut(s)	178, 184, 269, 312, 415, 592
CviJI	RGCY	9 cut(s)	8, 27, 73, 244, 298, 488, 896, 941, 976
CviKI_1	RGCY	9 cut(s)	8, 27, 73, 244, 298, 488, 896, 941, 976
CviQI	GTAC	2 cut(s)	603, 756
DdeI	CTNAG	3 cut(s)	69, 513, 942
DpnI	GATC	5 cut(s)	258, 322, 380, 429, 875
DpnII	GATC	5 cut(s)	256, 320, 378, 427, 873
DraIII	CACNNNGTG	1 cut(s)	551
Eam1104I	CTCTTC	2 cut(s)	158, 812
EarI	CTCTTC	2 cut(s)	158, 812
Eco130I	CCWWGG	2 cut(s)	28, 250
Eco147I	AGGCCT	1 cut(s)	27
Eco31I	GGTCTC	1 cut(s)	906
Eco32I	GATATC	1 cut(s)	707
Eco47I	GGWCC	2 cut(s)	174, 833
Eco47III	AGCGCT	1 cut(s)	1096
Eco57I	CTGAAG	3 cut(s)	219, 621, 998
EcoRI	GAATTC	2 cut(s)	115, 191
EcoRV	GATATC	1 cut(s)	707
EcoT14I	CCWWGG	2 cut(s)	28, 250
EcoT22I	ATGCAT	1 cut(s)	748
ErhI	CCWWGG	2 cut(s)	28, 250
FaeI	CATG	6 cut(s)	181, 187, 272, 315, 418, 595
FaqI	GGGAC	1 cut(s)	817
FatI	CATG	6 cut(s)	177, 183, 268, 311, 414, 591
FauI	CCCGC	1 cut(s)	411
FauNDI	CATATG	1 cut(s)	206
FbaI	TGATCA	2 cut(s)	427, 873
Fnu4HI	GCNGC	2 cut(s)	894, 1062
FokI	GGATG	7 cut(s)	200, 275, 374, 417, 528, 835, 883
Fsp4HI	GCNGC	2 cut(s)	894, 1062
FspBI	CTAG	4 cut(s)	479, 582, 798, 935
GlaI	GCGC	3 cut(s)	440, 1050, 1096
GluI	GCNGC	2 cut(s)	894, 1062
GsaI	CCCAGC	1 cut(s)	439
GsuI	CTGGAG	2 cut(s)	42, 860
HaeII	RGCGCY	2 cut(s)	442, 1098
HaeIII	GGCC	1 cut(s)	27
HhaI	GCGC	3 cut(s)	441, 1051, 1097
Hin1II	CATG	6 cut(s)	181, 187, 272, 315, 418, 595
Hin6I	GCGC	3 cut(s)	439, 1049, 1095
HinP1I	GCGC	3 cut(s)	439, 1049, 1095
HinfI	GANTC	8 cut(s)	17, 101, 503, 649, 794, 887, 949, 996
HphI	GGTGA	5 cut(s)	59, 266, 498, 566, 958
Hpy166II	GTNNAC	1 cut(s)	836
Hpy188I	TCNGA	4 cut(s)	13, 238, 376, 516
Hpy188III	TCNNGA	9 cut(s)	21, 137, 260, 425, 467, 500, 639, 681, 884
Hpy8I	GTNNAC	1 cut(s)	836
HpyAV	CCTTC	3 cut(s)	519, 861, 1023
HpyCH4III	ACNGT	5 cut(s)	358, 785, 928, 988, 1090
HpyCH4V	TGCA	4 cut(s)	348, 695, 746, 908
HpyF3I	CTNAG	3 cut(s)	69, 513, 942
Hsp92II	CATG	6 cut(s)	181, 187, 272, 315, 418, 595
HspAI	GCGC	3 cut(s)	439, 1049, 1095
KpnI	GGTACC	1 cut(s)	759
Ksp22I	TGATCA	2 cut(s)	427, 873
Kzo9I	GATC	5 cut(s)	256, 320, 378, 427, 873
LmnI	GCTCC	1 cut(s)	853
Lsp1109I	GCAGC	2 cut(s)	905, 1073
LweI	GCATC	3 cut(s)	49, 547, 755
MaeI	CTAG	4 cut(s)	479, 582, 798, 935
MaeIII	GTNAC	2 cut(s)	530, 779
MalI	GATC	5 cut(s)	258, 322, 380, 429, 875
MbiI	CCGCTC	1 cut(s)	856
MboI	GATC	5 cut(s)	256, 320, 378, 427, 873
MboII	GAAGA	5 cut(s)	175, 225, 482, 829, 971
MfeI	CAATTG	1 cut(s)	696
MluCI	AATT	7 cut(s)	115, 144, 191, 537, 696, 711, 768
MlyI	GAGTC	1 cut(s)	896
Mph1103I	ATGCAT	1 cut(s)	748
MslI	CAYNNNNRTG	4 cut(s)	93, 182, 273, 596
MunI	CAATTG	1 cut(s)	696
NdeI	CATATG	1 cut(s)	206
NdeII	GATC	5 cut(s)	256, 320, 378, 427, 873
NlaIII	CATG	6 cut(s)	181, 187, 272, 315, 418, 595
NlaIV	GGNNCC	2 cut(s)	175, 757
NmuCI	GTSAC	2 cut(s)	530, 779
NsiI	ATGCAT	1 cut(s)	748
NspI	RCATGY	1 cut(s)	595
PceI	AGGCCT	1 cut(s)	27
PfeI	GAWTC	7 cut(s)	17, 101, 503, 649, 794, 949, 996
PflMI	CCANNNNNTGG	3 cut(s)	207, 551, 716
PkrI	GCNGC	2 cut(s)	895, 1063
PleI	GAGTC	1 cut(s)	895
PpsI	GAGTC	1 cut(s)	895
PspFI	CCCAGC	1 cut(s)	435
PspN4I	GGNNCC	2 cut(s)	175, 757
PspPI	GGNCC	2 cut(s)	174, 833
RsaI	GTAC	2 cut(s)	604, 757
RsaNI	GTAC	2 cut(s)	603, 756
RseI	CAYNNNNRTG	4 cut(s)	93, 182, 273, 596
SatI	GCNGC	2 cut(s)	894, 1062
Sau3AI	GATC	5 cut(s)	256, 320, 378, 427, 873
Sau96I	GGNCC	2 cut(s)	174, 833
SchI	GAGTC	1 cut(s)	896
SfaNI	GCATC	3 cut(s)	49, 547, 755
SinI	GGWCC	2 cut(s)	174, 833
SmiMI	CAYNNNNRTG	4 cut(s)	93, 182, 273, 596
Sse9I	AATT	7 cut(s)	115, 144, 191, 537, 696, 711, 768
SseBI	AGGCCT	1 cut(s)	27
SsiI	CCGC	2 cut(s)	404, 856
SspMI	CTAG	4 cut(s)	479, 582, 798, 935
StuI	AGGCCT	1 cut(s)	27
StyI	CCWWGG	2 cut(s)	28, 250
TaaI	ACNGT	5 cut(s)	358, 785, 928, 988, 1090
TaqI	TCGA	4 cut(s)	119, 381, 883, 999
TaqII	GACCGA	1 cut(s)	888
TasI	AATT	7 cut(s)	115, 144, 191, 537, 696, 711, 768
TfiI	GAWTC	7 cut(s)	17, 101, 503, 649, 794, 949, 996
TscAI	CASTG	4 cut(s)	843, 855, 931, 993
TseFI	GTSAC	2 cut(s)	530, 779
TseI	GCWGC	2 cut(s)	893, 1061
Tsp45I	GTSAC	2 cut(s)	530, 779
TspDTI	ATGAA	9 cut(s)	30, 156, 194, 204, 234, 300, 530, 780, 984
TspRI	CASTG	4 cut(s)	843, 855, 931, 993
Van91I	CCANNNNNTGG	3 cut(s)	207, 551, 716
VpaK11BI	GGWCC	2 cut(s)	174, 833
XapI	RAATTY	3 cut(s)	115, 144, 191
XceI	RCATGY	1 cut(s)	595
XspI	CTAG	4 cut(s)	479, 582, 798, 935
Zsp2I	ATGCAT	1 cut(s)	748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.