Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004741.1

Orthogroup ID

OG0004462

Physical Location & Seq

Genomic Coordinates Reverse (-)

41543 .. 42499

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004741.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atggtgatttctgatgaatttggaggccttggctgtgaccaaaatagtgatggtaatgatgctaaacctcaaccaccaccatctcagcatgaaaatggggaatcatcaaaacagaattcgatattctcgcttactcttgatgaaattcaaagcaagagtgggaagagttttgggtccatgaacatggatgagttccttgccaacatatggagtgttgatgaaaatcaagtttgtgaagaacaacctaaccaaggtggtcaggaggacccttccaatgatgggaaagacacaacttcaaagacgggatctctttctcgtcagggatcattctccattcctaccccactttgcaagaaaactgtagatgaggtatggtcagagatcgacaaaactcaacaaccaccccctcctaacaacatgagtattaatcctggacctcctcagcgccaaccaacaatcggagaaataactctggaagatttcctggtaaaagctggaatagttcaagaaagacctcagaacggaatggaaagtactacaattcaaccacacggtggtaacactaacaattgtaacgtggcaactagcagcagcacatatggggatacaagttttggaatgggaaatcatttgatcggttcagggttttttaatcctcaaggttttgttccaaataatttgtccgggaatggatatgcaactgctccatatccaatgttcggagagagaaaaatggggctgggagaaacatcttgtggaggtactagtactgcaattgagaaatgtcatagtttgccagaatctagtgggacaaacaacaagaagaggataatcgatggtccaccagaggtactagtggagcggaggcaacgcaggatgatcaagaatcgagagtcagcagctcggtctcgtgcaaggaaacaggtatattatccaacattccattttcaattatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008134 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

318

Amino Acids

34.58

Weight (kDa)

5.26

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44460
fragaria_vesca	FvH4_3g24780 FvH4_3g24800
malus_domestica	MD03G1143300.v1.1
prunus_persica	Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1 Prupe.6G128900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0044361 RchiOBHm_Chr5g0044371
rosa_laevigata	RLG00000034268 RLG00000034269
rosa_multiflora	Rmu_sc0004741.1_g000007 Rmu_sc0004741.1_g000008
rosa_roxburghii	Rroxscaffold_1G00036580 Rroxscaffold_1G00036600
rosa_rugosa	Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700 Rorug05G0213700
rosa_samantha	Rh5AG297900 Rh5AG298100 Rh5BG305300 Rh5BG305500 Rh5CG332300 Rh5CG332500 Rh5DG314500 Rh5DG314700
rosa_wichuraiana	Rw5G027580 Rw5G027590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	207, 554
AccBSI	CCGCTC	1 cut(s)	862
AciI	CCGC	1 cut(s)	862
AclWI	GGATC	2 cut(s)	313, 331
AcsI	RAATTY	3 cut(s)	17, 115, 144
AdeI	CACNNNGTG	1 cut(s)	554
AfaI	GTAC	4 cut(s)	535, 763, 769, 852
AfiI	CCNNNNNNNGG	7 cut(s)	207, 251, 279, 458, 521, 554, 719
AgsI	TTSAA	5 cut(s)	149, 297, 506, 545, 950
AhlI	ACTAGT	2 cut(s)	764, 853
AjnI	CCWGG	2 cut(s)	430, 483
AluBI	AGCT	2 cut(s)	494, 902
AluI	AGCT	2 cut(s)	494, 902
Alw26I	GTCTC	1 cut(s)	912
AlwI	GGATC	2 cut(s)	313, 331
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	3 cut(s)	588, 591, 899
ApoI	RAATTY	3 cut(s)	17, 115, 144
ArsI	GACNNNNNNTTYG	2 cut(s)	665, 697
AseI	ATTAAT	1 cut(s)	426
AspLEI	GCGC	1 cut(s)	447
AspS9I	GGNCC	4 cut(s)	174, 265, 434, 839
AsuC2I	CCSGG	1 cut(s)	685
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	4 cut(s)	174, 265, 434, 839
BauI	CACGAG	1 cut(s)	909
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	3 cut(s)	600, 603, 911
BccI	CCATC	4 cut(s)	44, 88, 272, 830
BciT130I	CCWGG	2 cut(s)	432, 485
BciVI	GTATCC	1 cut(s)	598
BclI	TGATCA	1 cut(s)	879
BcnI	CCSGG	1 cut(s)	685
BcoDI	GTCTC	1 cut(s)	912
BcuI	ACTAGT	2 cut(s)	764, 853
BfaI	CTAG	4 cut(s)	585, 765, 804, 854
BfmI	CTRYAG	1 cut(s)	360
BfoI	RGCGCY	1 cut(s)	448
BfuI	GTATCC	1 cut(s)	598
BisI	GCNGC	3 cut(s)	589, 592, 900
BlsI	GCNGC	3 cut(s)	590, 593, 901
BmcAI	AGTACT	2 cut(s)	535, 769
Bme1390I	CCNGG	3 cut(s)	432, 485, 685
Bme18I	GGWCC	4 cut(s)	174, 265, 434, 839
BmgT120I	GGNCC	4 cut(s)	174, 265, 434, 839
BmiI	GGNNCC	2 cut(s)	175, 267
BmrFI	CCNGG	3 cut(s)	432, 485, 685
BmsI	GCATC	1 cut(s)	49
Bpu10I	CCTNAGC	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	642
BpuMI	CCSGG	1 cut(s)	685
Bsa29I	ATCGAT	1 cut(s)	834
BsaBI	GATNNNNATC	1 cut(s)	222
BsaI	GGTCTC	1 cut(s)	912
BsaJI	CCNNGG	2 cut(s)	28, 250
Bsc4I	CCNNNNNNNGG	7 cut(s)	207, 251, 279, 458, 521, 554, 719
Bse8I	GATNNNNATC	1 cut(s)	222
BseBI	CCWGG	2 cut(s)	432, 485
BseCI	ATCGAT	1 cut(s)	834
BseDI	CCNNGG	2 cut(s)	28, 250
BseGI	GGATG	2 cut(s)	193, 882
BseJI	GATNNNNATC	1 cut(s)	222
BseLI	CCNNNNNNNGG	7 cut(s)	207, 251, 279, 458, 521, 554, 719
BseMII	CTCAG	3 cut(s)	98, 455, 530
BseRI	GAGGAG	1 cut(s)	429
BseXI	GCAGC	3 cut(s)	600, 603, 911
BseYI	CCCAGC	1 cut(s)	739
BshFI	GGCC	1 cut(s)	27
BshVI	ATCGAT	1 cut(s)	834
BsiSI	CCGG	1 cut(s)	684
BslFI	GGGAC	1 cut(s)	823
BslI	CCNNNNNNNGG	7 cut(s)	207, 251, 279, 458, 521, 554, 719
BsmAI	GTCTC	1 cut(s)	912
BsmFI	GGGAC	1 cut(s)	823
BsnI	GGCC	1 cut(s)	27
Bso31I	GGTCTC	1 cut(s)	912
Bsp143I	GATC	5 cut(s)	305, 323, 381, 633, 879
BspACI	CCGC	1 cut(s)	862
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	3 cut(s)	97, 454, 529
BspDI	ATCGAT	1 cut(s)	834
BspLI	GGNNCC	2 cut(s)	175, 267
BspPI	GGATC	2 cut(s)	313, 331
BspTNI	GGTCTC	1 cut(s)	912
BsrBI	CCGCTC	1 cut(s)	862
BssECI	CCNNGG	2 cut(s)	28, 250
BssMI	GATC	5 cut(s)	305, 323, 381, 633, 879
BssSI	CACGAG	1 cut(s)	909
BssT1I	CCWWGG	2 cut(s)	28, 250
Bst2BI	CACGAG	1 cut(s)	909
Bst2UI	CCWGG	2 cut(s)	432, 485
Bst4CI	ACNGT	2 cut(s)	361, 554
Bst6I	CTCTTC	2 cut(s)	158, 818
BstDEI	CTNAG	3 cut(s)	84, 441, 516
BstENI	CCTNNNNNAGG	1 cut(s)	249
BstF5I	GGATG	2 cut(s)	193, 882
BstH2I	RGCGCY	1 cut(s)	448
BstHHI	GCGC	1 cut(s)	447
BstKTI	GATC	5 cut(s)	308, 326, 384, 636, 882
BstMAI	GTCTC	1 cut(s)	912
BstMBI	GATC	5 cut(s)	305, 323, 381, 633, 879
BstNI	CCWGG	2 cut(s)	432, 485
BstSCI	CCNGG	3 cut(s)	430, 483, 683
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	3 cut(s)	600, 603, 911
BstX2I	RGATCY	1 cut(s)	305
BstXI	CCANNNNNNTGG	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	305
Bsu15I	ATCGAT	1 cut(s)	834
BsuI	GTATCC	1 cut(s)	598
BsuRI	GGCC	1 cut(s)	27
BsuTUI	ATCGAT	1 cut(s)	834
BtsCI	GGATG	2 cut(s)	193, 882
CfoI	GCGC	1 cut(s)	447
Cfr13I	GGNCC	4 cut(s)	174, 265, 434, 839
ClaI	ATCGAT	1 cut(s)	834
Csp6I	GTAC	4 cut(s)	534, 762, 768, 851
CviAII	CATG	4 cut(s)	89, 178, 184, 418
CviJI	RGCY	5 cut(s)	27, 33, 494, 739, 902
CviKI_1	RGCY	5 cut(s)	27, 33, 494, 739, 902
CviQI	GTAC	4 cut(s)	534, 762, 768, 851
DdeI	CTNAG	3 cut(s)	84, 441, 516
DpnI	GATC	5 cut(s)	307, 325, 383, 635, 881
DpnII	GATC	5 cut(s)	305, 323, 381, 633, 879
DraIII	CACNNNGTG	1 cut(s)	554
Eam1104I	CTCTTC	2 cut(s)	158, 818
EarI	CTCTTC	2 cut(s)	158, 818
Eco130I	CCWWGG	2 cut(s)	28, 250
Eco147I	AGGCCT	1 cut(s)	27
Eco31I	GGTCTC	1 cut(s)	912
Eco47I	GGWCC	4 cut(s)	174, 265, 434, 839
EcoNI	CCTNNNNNAGG	1 cut(s)	249
EcoO109I	RGGNCCY	1 cut(s)	265
EcoRI	GAATTC	1 cut(s)	115
EcoRII	CCWGG	2 cut(s)	430, 483
EcoT14I	CCWWGG	2 cut(s)	28, 250
ErhI	CCWWGG	2 cut(s)	28, 250
FaeI	CATG	4 cut(s)	92, 181, 187, 421
FaqI	GGGAC	1 cut(s)	823
FatI	CATG	4 cut(s)	88, 177, 183, 417
FauNDI	CATATG	2 cut(s)	206, 598
FbaI	TGATCA	1 cut(s)	879
Fnu4HI	GCNGC	3 cut(s)	589, 592, 900
FokI	GGATG	2 cut(s)	200, 889
Fsp4HI	GCNGC	3 cut(s)	589, 592, 900
FspBI	CTAG	4 cut(s)	585, 765, 804, 854
GlaI	GCGC	1 cut(s)	446
GluI	GCNGC	3 cut(s)	589, 592, 900
GsaI	CCCAGC	1 cut(s)	743
HaeII	RGCGCY	1 cut(s)	448
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	1 cut(s)	684
HhaI	GCGC	1 cut(s)	447
Hin1II	CATG	4 cut(s)	92, 181, 187, 421
Hin6I	GCGC	1 cut(s)	445
HinP1I	GCGC	1 cut(s)	445
HinfI	GANTC	4 cut(s)	101, 800, 886, 893
HpaII	CCGG	1 cut(s)	684
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	842
Hpy188I	TCNGA	5 cut(s)	13, 379, 461, 519, 722
Hpy188III	TCNNGA	6 cut(s)	137, 260, 473, 506, 883, 890
Hpy8I	GTNNAC	1 cut(s)	842
HpyAV	CCTTC	1 cut(s)	279
HpyCH4III	ACNGT	2 cut(s)	361, 554
HpyCH4IV	ACGT	1 cut(s)	576
HpyCH4V	TGCA	4 cut(s)	351, 698, 773, 914
HpyF3I	CTNAG	3 cut(s)	84, 441, 516
HpySE526I	ACGT	1 cut(s)	576
Hsp92II	CATG	4 cut(s)	92, 181, 187, 421
HspAI	GCGC	1 cut(s)	445
Ksp22I	TGATCA	1 cut(s)	879
Kzo9I	GATC	5 cut(s)	305, 323, 381, 633, 879
LmnI	GCTCC	2 cut(s)	709, 859
Lsp1109I	GCAGC	3 cut(s)	600, 603, 911
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	4 cut(s)	585, 765, 804, 854
MaeII	ACGT	1 cut(s)	576
MaeIII	GTNAC	3 cut(s)	35, 557, 572
MalI	GATC	5 cut(s)	307, 325, 383, 635, 881
MbiI	CCGCTC	1 cut(s)	862
MboI	GATC	5 cut(s)	305, 323, 381, 633, 879
MboII	GAAGA	4 cut(s)	175, 248, 488, 835
MfeI	CAATTG	2 cut(s)	568, 774
MflI	RGATCY	1 cut(s)	305
MluCI	AATT	8 cut(s)	17, 115, 144, 540, 568, 676, 774, 950
MlyI	GAGTC	1 cut(s)	902
MseI	TTAA	2 cut(s)	426, 651
MslI	CAYNNNNRTG	2 cut(s)	93, 182
MspI	CCGG	1 cut(s)	684
MspR9I	CCNGG	3 cut(s)	432, 485, 685
MunI	CAATTG	2 cut(s)	568, 774
MvaI	CCWGG	2 cut(s)	432, 485
NciI	CCSGG	1 cut(s)	685
NdeI	CATATG	2 cut(s)	206, 598
NdeII	GATC	5 cut(s)	305, 323, 381, 633, 879
NlaIII	CATG	4 cut(s)	92, 181, 187, 421
NlaIV	GGNNCC	2 cut(s)	175, 267
NmuCI	GTSAC	1 cut(s)	35
PceI	AGGCCT	1 cut(s)	27
PfeI	GAWTC	3 cut(s)	101, 800, 886
PflMI	CCANNNNNTGG	2 cut(s)	207, 554
PfoI	TCCNGGA	2 cut(s)	430, 683
PkrI	GCNGC	3 cut(s)	590, 593, 901
PleI	GAGTC	1 cut(s)	901
PpsI	GAGTC	1 cut(s)	901
PpuMI	RGGWCCY	1 cut(s)	265
PshBI	ATTAAT	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	265
Psp6I	CCWGG	2 cut(s)	430, 483
PspFI	CCCAGC	1 cut(s)	739
PspGI	CCWGG	2 cut(s)	430, 483
PspN4I	GGNNCC	2 cut(s)	175, 267
PspPI	GGNCC	4 cut(s)	174, 265, 434, 839
PspPPI	RGGWCCY	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	305
RsaI	GTAC	4 cut(s)	535, 763, 769, 852
RsaNI	GTAC	4 cut(s)	534, 762, 768, 851
RseI	CAYNNNNRTG	2 cut(s)	93, 182
SaqAI	TTAA	2 cut(s)	426, 651
SatI	GCNGC	3 cut(s)	589, 592, 900
Sau3AI	GATC	5 cut(s)	305, 323, 381, 633, 879
Sau96I	GGNCC	4 cut(s)	174, 265, 434, 839
ScaI	AGTACT	2 cut(s)	535, 769
SchI	GAGTC	1 cut(s)	902
ScrFI	CCNGG	3 cut(s)	432, 485, 685
SfaNI	GCATC	1 cut(s)	49
SfcI	CTRYAG	1 cut(s)	360
SinI	GGWCC	4 cut(s)	174, 265, 434, 839
SmiMI	CAYNNNNRTG	2 cut(s)	93, 182
SmlI	CTYRAG	1 cut(s)	657
SmoI	CTYRAG	1 cut(s)	657
SpeI	ACTAGT	2 cut(s)	764, 853
Sse9I	AATT	8 cut(s)	17, 115, 144, 540, 568, 676, 774, 950
SseBI	AGGCCT	1 cut(s)	27
SsiI	CCGC	1 cut(s)	862
SspMI	CTAG	4 cut(s)	585, 765, 804, 854
StuI	AGGCCT	1 cut(s)	27
StyD4I	CCNGG	3 cut(s)	430, 483, 683
StyI	CCWWGG	2 cut(s)	28, 250
TaaI	ACNGT	2 cut(s)	361, 554
TaiI	ACGT	1 cut(s)	579
TaqI	TCGA	4 cut(s)	119, 384, 834, 889
TaqII	GACCGA	1 cut(s)	894
TasI	AATT	8 cut(s)	17, 115, 144, 540, 568, 676, 774, 950
TatI	WGTACW	2 cut(s)	533, 767
TfiI	GAWTC	3 cut(s)	101, 800, 886
Tru1I	TTAA	2 cut(s)	426, 651
Tru9I	TTAA	2 cut(s)	426, 651
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	3 cut(s)	588, 591, 899
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	5 cut(s)	30, 105, 156, 194, 234
TspGWI	ACGGA	1 cut(s)	537
Van91I	CCANNNNNTGG	2 cut(s)	207, 554
VpaK11BI	GGWCC	4 cut(s)	174, 265, 434, 839
VspI	ATTAAT	1 cut(s)	426
XagI	CCTNNNNNAGG	1 cut(s)	249
XapI	RAATTY	3 cut(s)	17, 115, 144
XcmI	CCANNNNNNNNNTGG	1 cut(s)	47
XspI	CTAG	4 cut(s)	585, 765, 804, 854
ZrmI	AGTACT	2 cut(s)	535, 769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.