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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G22450 AT5G22450 AT5G22450 |
| fragaria_vesca | FvH4_3g24820 FvH4_3g24820 |
| malus_domestica | MD03G1143400.v1.1 MD11G1164200.v1.1 |
| prunus_persica | Prupe.6G129000_v2.0.a1 Prupe.6G129000_v2.0.a1 Prupe.6G129000_v2.0.a1 Prupe.6G129000_v2.0.a1 Prupe.6G129000_v2.0.a1 Prupe.6G129000_v2.0.a1 Prupe.6G129000_v2.0.a1 |
| pyrus_communis | pycom03g09860 pycom11g13560 |
| rosa_chinensis | RchiOBHm_Chr5g0044401 |
| rosa_laevigata | RLG00000034271 |
| rosa_multiflora | Rmu_sc0004741.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00036550 |
| rosa_rugosa | Rorug05G0213700 Rorug05G0213700 |
| rosa_samantha | Rh5AG298300 Rh5BG305600 Rh5CG332600 Rh5DG314800 |
| rosa_wichuraiana | Rw5G027600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 62 |
| Acc36I | ACCTGC | 3 cut(s) | 103, 2633, 3171 |
| AccB1I | GGYRCC | 1 cut(s) | 589 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 599, 1884 |
| AccIII | TCCGGA | 1 cut(s) | 2188 |
| AciI | CCGC | 5 cut(s) | 76, 158, 782, 2122, 2648 |
| AclI | AACGTT | 2 cut(s) | 238, 975 |
| AclWI | GGATC | 4 cut(s) | 225, 922, 2525, 2655 |
| AcsI | RAATTY | 6 cut(s) | 1228, 1442, 2498, 2953, 3002, 3019 |
| AcuI | CTGAAG | 2 cut(s) | 953, 2853 |
| AcyI | GRCGYC | 2 cut(s) | 59, 590 |
| AfeI | AGCGCT | 1 cut(s) | 1975 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 599, 659, 1884, 2647 |
| AflII | CTTAAG | 1 cut(s) | 323 |
| AflIII | ACRYGT | 2 cut(s) | 49, 2004 |
| AhlI | ACTAGT | 1 cut(s) | 2353 |
| AjiI | CACGTC | 2 cut(s) | 2007, 2979 |
| AjnI | CCWGG | 3 cut(s) | 1195, 2025, 2142 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 463, 495, 1470, 1502 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2404, 2436 |
| Alw26I | GTCTC | 4 cut(s) | 507, 772, 1251, 1569 |
| AlwI | GGATC | 4 cut(s) | 225, 922, 2525, 2655 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 68, 875, 2063 |
| Ama87I | CYCGRG | 2 cut(s) | 201, 2249 |
| Aor13HI | TCCGGA | 1 cut(s) | 2188 |
| Aor51HI | AGCGCT | 1 cut(s) | 1975 |
| AoxI | GGCC | 7 cut(s) | 1193, 1255, 1648, 2926, 3091, 3235, 3259 |
| ApaI | GGGCCC | 1 cut(s) | 3095 |
| ApoI | RAATTY | 6 cut(s) | 1228, 1442, 2498, 2953, 3002, 3019 |
| AseI | ATTAAT | 1 cut(s) | 2229 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 580, 601, 895, 1177 |
| AspA2I | CCTAGG | 1 cut(s) | 2084 |
| AspLEI | GCGC | 2 cut(s) | 592, 1976 |
| AspS9I | GGNCC | 7 cut(s) | 906, 1457, 1648, 2365, 2926, 3091, 3092 |
| AsuC2I | CCSGG | 2 cut(s) | 2665, 3105 |
| AsuHPI | GGTGA | 8 cut(s) | 218, 329, 692, 1116, 1391, 1565, 1778, 2735 |
| AvaI | CYCGRG | 2 cut(s) | 201, 2249 |
| AvaII | GGWCC | 3 cut(s) | 906, 1457, 2365 |
| AvrII | CCTAGG | 1 cut(s) | 2084 |
| AxyI | CCTNAGG | 1 cut(s) | 144 |
| BaeGI | GKGCMC | 1 cut(s) | 3095 |
| BanI | GGYRCC | 1 cut(s) | 589 |
| BanII | GRGCYC | 2 cut(s) | 1096, 3095 |
| BbsI | GAAGAC | 4 cut(s) | 24, 1162, 1679, 3237 |
| BccI | CCATC | 5 cut(s) | 614, 1794, 1961, 2374, 2649 |
| BceAI | ACGGC | 1 cut(s) | 3250 |
| BciT130I | CCWGG | 3 cut(s) | 1197, 2027, 2144 |
| BclI | TGATCA | 1 cut(s) | 1393 |
| BcnI | CCSGG | 2 cut(s) | 2665, 3105 |
| BcoDI | GTCTC | 4 cut(s) | 507, 772, 1251, 1569 |
| BcuI | ACTAGT | 1 cut(s) | 2353 |
| BfmI | CTRYAG | 7 cut(s) | 546, 867, 1014, 1074, 2168, 2331, 2540 |
| BfoI | RGCGCY | 2 cut(s) | 593, 1977 |
| BfrI | CTTAAG | 1 cut(s) | 323 |
| BfuAI | ACCTGC | 3 cut(s) | 103, 2633, 3171 |
| BglII | AGATCT | 1 cut(s) | 3202 |
| BlnI | CCTAGG | 1 cut(s) | 2084 |
| BmcAI | AGTACT | 2 cut(s) | 438, 3211 |
| Bme1390I | CCNGG | 5 cut(s) | 1197, 2027, 2144, 2665, 3105 |
| Bme18I | GGWCC | 3 cut(s) | 906, 1457, 2365 |
| BmeT110I | CYCGRG | 2 cut(s) | 201, 2249 |
| BmgBI | CACGTC | 2 cut(s) | 2007, 2979 |
| BmgT120I | GGNCC | 7 cut(s) | 906, 1457, 1648, 2365, 2926, 3091, 3092 |
| BmiI | GGNNCC | 7 cut(s) | 591, 604, 907, 1649, 2638, 2927, 3093 |
| BmrFI | CCNGG | 5 cut(s) | 1197, 2027, 2144, 2665, 3105 |
| BmrI | ACTGGG | 1 cut(s) | 2955 |
| BmsI | GCATC | 6 cut(s) | 310, 1596, 1669, 2272, 2681, 3285 |
| BmuI | ACTGGG | 1 cut(s) | 2955 |
| BpiI | GAAGAC | 4 cut(s) | 24, 1162, 1679, 3237 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1549, 1581 |
| BpmI | CTGGAG | 1 cut(s) | 2183 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1069, 1623 |
| BpuEI | CTTGAG | 3 cut(s) | 88, 425, 2997 |
| BpuMI | CCSGG | 2 cut(s) | 2665, 3105 |
| BsaAI | YACGTR | 1 cut(s) | 2438 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1392 |
| BsaHI | GRCGYC | 2 cut(s) | 59, 590 |
| BsaI | GGTCTC | 1 cut(s) | 772 |
| BsaJI | CCNNGG | 4 cut(s) | 1196, 2084, 2407, 2664 |
| BsaWI | WCCGGW | 2 cut(s) | 2009, 2188 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 796, 826, 2208, 2238 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 599, 659, 1884, 2647 |
| Bse1I | ACTGG | 3 cut(s) | 604, 2961, 3192 |
| Bse21I | CCTNAGG | 1 cut(s) | 144 |
| Bse3DI | GCAATG | 5 cut(s) | 735, 1062, 1363, 2367, 2635 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1392 |
| BseAI | TCCGGA | 1 cut(s) | 2188 |
| BseBI | CCWGG | 3 cut(s) | 1197, 2027, 2144 |
| BseDI | CCNNGG | 4 cut(s) | 1196, 2084, 2407, 2664 |
| BseGI | GGATG | 4 cut(s) | 136, 301, 2152, 3283 |
| BseJI | GATNNNNATC | 1 cut(s) | 1392 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 599, 659, 1884, 2647 |
| BseMI | GCAATG | 5 cut(s) | 735, 1062, 1363, 2367, 2635 |
| BseNI | ACTGG | 3 cut(s) | 604, 2961, 3192 |
| BseRI | GAGGAG | 3 cut(s) | 551, 1559, 2845 |
| BseSI | GKGCMC | 1 cut(s) | 3095 |
| BsgI | GTGCAG | 1 cut(s) | 633 |
| BshFI | GGCC | 7 cut(s) | 1195, 1257, 1650, 2928, 3093, 3237, 3261 |
| BshNI | GGYRCC | 1 cut(s) | 589 |
| BsiHKCI | CYCGRG | 2 cut(s) | 201, 2249 |
| BsiSI | CCGG | 4 cut(s) | 2010, 2189, 2664, 3104 |
| BslFI | GGGAC | 3 cut(s) | 919, 1901, 2259 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 599, 659, 1884, 2647 |
| BsmAI | GTCTC | 4 cut(s) | 507, 772, 1251, 1569 |
| BsmFI | GGGAC | 3 cut(s) | 919, 1901, 2259 |
| BsmI | GAATGC | 1 cut(s) | 1627 |
| BsnI | GGCC | 7 cut(s) | 1195, 1257, 1650, 2928, 3093, 3237, 3261 |
| Bso31I | GGTCTC | 1 cut(s) | 772 |
| BsoBI | CYCGRG | 2 cut(s) | 201, 2249 |
| Bsp120I | GGGCCC | 1 cut(s) | 3091 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1096, 3095 |
| Bsp13I | TCCGGA | 1 cut(s) | 2188 |
| Bsp1407I | TGTACA | 3 cut(s) | 343, 431, 1985 |
| Bsp19I | CCATGG | 1 cut(s) | 2407 |
| BspACI | CCGC | 5 cut(s) | 76, 158, 782, 2122, 2648 |
| BspANI | GGCC | 7 cut(s) | 1195, 1257, 1650, 2928, 3093, 3237, 3261 |
| BspEI | TCCGGA | 1 cut(s) | 2188 |
| BspHI | TCATGA | 3 cut(s) | 609, 1396, 3247 |
| BspLI | GGNNCC | 7 cut(s) | 591, 604, 907, 1649, 2638, 2927, 3093 |
| BspMAI | CTGCAG | 3 cut(s) | 871, 1018, 1078 |
| BspMI | ACCTGC | 3 cut(s) | 103, 2633, 3171 |
| BspPI | GGATC | 4 cut(s) | 225, 922, 2525, 2655 |
| BspQI | GCTCTTC | 1 cut(s) | 2760 |
| BspT107I | GGYRCC | 1 cut(s) | 589 |
| BspTI | CTTAAG | 1 cut(s) | 323 |
| BspTNI | GGTCTC | 1 cut(s) | 772 |
| BsrDI | GCAATG | 5 cut(s) | 735, 1062, 1363, 2367, 2635 |
| BsrGI | TGTACA | 3 cut(s) | 343, 431, 1985 |
| BsrI | ACTGG | 3 cut(s) | 604, 2961, 3192 |
| BssECI | CCNNGG | 4 cut(s) | 1196, 2084, 2407, 2664 |
| BssNI | GRCGYC | 2 cut(s) | 59, 590 |
| BssT1I | CCWWGG | 2 cut(s) | 2084, 2407 |
| Bst2UI | CCWGG | 3 cut(s) | 1197, 2027, 2144 |
| Bst4CI | ACNGT | 6 cut(s) | 436, 479, 565, 2034, 2565, 2576 |
| Bst6I | CTCTTC | 4 cut(s) | 1254, 2760, 2810, 3186 |
| BstACI | GRCGYC | 2 cut(s) | 59, 590 |
| BstAFI | CTTAAG | 1 cut(s) | 323 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2260, 2520 |
| BstAUI | TGTACA | 3 cut(s) | 343, 431, 1985 |
| BstBAI | YACGTR | 1 cut(s) | 2438 |
| BstC8I | GCNNGC | 7 cut(s) | 78, 198, 675, 726, 1946, 3070, 3239 |
| BstDSI | CCRYGG | 1 cut(s) | 2407 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 657 |
| BstF5I | GGATG | 4 cut(s) | 136, 301, 2152, 3283 |
| BstH2I | RGCGCY | 2 cut(s) | 593, 1977 |
| BstHHI | GCGC | 2 cut(s) | 592, 1976 |
| BstMAI | GTCTC | 4 cut(s) | 507, 772, 1251, 1569 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 155, 307, 1073, 1424, 1433, 2260, 2520 |
| BstNI | CCWGG | 3 cut(s) | 1197, 2027, 2144 |
| BstNSI | RCATGY | 2 cut(s) | 1356, 1948 |
| BstSCI | CCNGG | 5 cut(s) | 1195, 2025, 2142, 2663, 3103 |
| BstSFI | CTRYAG | 7 cut(s) | 546, 867, 1014, 1074, 2168, 2331, 2540 |
| BstSLI | GKGCMC | 1 cut(s) | 3095 |
| BstSNI | TACGTA | 1 cut(s) | 2438 |
| BstV2I | GAAGAC | 4 cut(s) | 24, 1162, 1679, 3237 |
| BstX2I | RGATCY | 2 cut(s) | 2660, 3202 |
| BstYI | RGATCY | 2 cut(s) | 2660, 3202 |
| Bsu36I | CCTNAGG | 1 cut(s) | 144 |
| BsuRI | GGCC | 7 cut(s) | 1195, 1257, 1650, 2928, 3093, 3237, 3261 |
| BtgI | CCRYGG | 1 cut(s) | 2407 |
| BtgZI | GCGATG | 1 cut(s) | 609 |
| BtrI | CACGTC | 2 cut(s) | 2007, 2979 |
| BtsCI | GGATG | 4 cut(s) | 136, 301, 2152, 3283 |
| BtsI | GCAGTG | 1 cut(s) | 258 |
| BtsIMutI | CAGTG | 9 cut(s) | 69, 258, 770, 2039, 2581, 2754, 2968, 3147, 3185 |
| BveI | ACCTGC | 3 cut(s) | 103, 2633, 3171 |
| Cac8I | GCNNGC | 7 cut(s) | 78, 198, 675, 726, 1946, 3070, 3239 |
| CaiI | CAGNNNCTG | 3 cut(s) | 68, 875, 2063 |
| CciI | TCATGA | 3 cut(s) | 609, 1396, 3247 |
| CfoI | GCGC | 2 cut(s) | 592, 1976 |
| Cfr13I | GGNCC | 7 cut(s) | 906, 1457, 1648, 2365, 2926, 3091, 3092 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3136, 3171 |
| DinI | GGCGCC | 1 cut(s) | 591 |
| Eam1104I | CTCTTC | 4 cut(s) | 1254, 2760, 2810, 3186 |
| EarI | CTCTTC | 4 cut(s) | 1254, 2760, 2810, 3186 |
| Eco105I | TACGTA | 1 cut(s) | 2438 |
| Eco130I | CCWWGG | 2 cut(s) | 2084, 2407 |
| Eco147I | AGGCCT | 2 cut(s) | 1195, 1257 |
| Eco24I | GRGCYC | 2 cut(s) | 1096, 3095 |
| Eco31I | GGTCTC | 1 cut(s) | 772 |
| Eco47I | GGWCC | 3 cut(s) | 906, 1457, 2365 |
| Eco47III | AGCGCT | 1 cut(s) | 1975 |
| Eco57I | CTGAAG | 2 cut(s) | 953, 2853 |
| Eco81I | CCTNAGG | 1 cut(s) | 144 |
| Eco88I | CYCGRG | 2 cut(s) | 201, 2249 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 657 |
| EcoRI | GAATTC | 1 cut(s) | 3002 |
| EcoRII | CCWGG | 3 cut(s) | 1195, 2025, 2142 |
| EcoT14I | CCWWGG | 2 cut(s) | 2084, 2407 |
| EcoT38I | GRGCYC | 2 cut(s) | 1096, 3095 |
| EgeI | GGCGCC | 1 cut(s) | 591 |
| EheI | GGCGCC | 1 cut(s) | 591 |
| ErhI | CCWWGG | 2 cut(s) | 2084, 2407 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2276, 2308 |
| FaqI | GGGAC | 3 cut(s) | 919, 1901, 2259 |
| FauI | CCCGC | 1 cut(s) | 69 |
| FbaI | TGATCA | 1 cut(s) | 1393 |
| FokI | GGATG | 4 cut(s) | 143, 288, 2159, 3290 |
| FriOI | GRGCYC | 2 cut(s) | 1096, 3095 |
| GlaI | GCGC | 2 cut(s) | 591, 1975 |
| GsuI | CTGGAG | 1 cut(s) | 2183 |
| HaeII | RGCGCY | 2 cut(s) | 593, 1977 |
| HaeIII | GGCC | 7 cut(s) | 1195, 1257, 1650, 2928, 3093, 3237, 3261 |
| HapII | CCGG | 4 cut(s) | 2010, 2189, 2664, 3104 |
| HhaI | GCGC | 2 cut(s) | 592, 1976 |
| Hin1I | GRCGYC | 2 cut(s) | 59, 590 |
| Hin6I | GCGC | 2 cut(s) | 590, 1974 |
| HinP1I | GCGC | 2 cut(s) | 590, 1974 |
| HincII | GTYRAC | 1 cut(s) | 1335 |
| HindII | GTYRAC | 1 cut(s) | 1335 |
| HindIII | AAGCTT | 1 cut(s) | 2769 |
| HpaI | GTTAAC | 1 cut(s) | 1335 |
| HpaII | CCGG | 4 cut(s) | 2010, 2189, 2664, 3104 |
| HphI | GGTGA | 8 cut(s) | 218, 329, 692, 1116, 1391, 1565, 1778, 2735 |
| Hpy166II | GTNNAC | 7 cut(s) | 637, 1301, 1335, 1691, 1988, 2480, 3119 |
| Hpy8I | GTNNAC | 7 cut(s) | 637, 1301, 1335, 1691, 1988, 2480, 3119 |
| Hpy99I | CGWCG | 1 cut(s) | 2983 |
| HpyCH4III | ACNGT | 6 cut(s) | 436, 479, 565, 2034, 2565, 2576 |
| HpyCH4IV | ACGT | 8 cut(s) | 49, 59, 238, 975, 2006, 2437, 2476, 2978 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 155, 307, 1073, 1424, 1433, 2260, 2520 |
| HpySE526I | ACGT | 8 cut(s) | 49, 59, 238, 975, 2006, 2437, 2476, 2978 |
| Hsp92I | GRCGYC | 2 cut(s) | 59, 590 |
| HspAI | GCGC | 2 cut(s) | 590, 1974 |
| KasI | GGCGCC | 1 cut(s) | 589 |
| Kpn2I | TCCGGA | 1 cut(s) | 2188 |
| Ksp22I | TGATCA | 1 cut(s) | 1393 |
| KspAI | GTTAAC | 1 cut(s) | 1335 |
| LguI | GCTCTTC | 1 cut(s) | 2760 |
| LmnI | GCTCC | 6 cut(s) | 248, 466, 826, 1546, 2071, 2164 |
| LweI | GCATC | 6 cut(s) | 310, 1596, 1669, 2272, 2681, 3285 |
| MaeII | ACGT | 8 cut(s) | 49, 59, 238, 975, 2006, 2437, 2476, 2978 |
| MaeIII | GTNAC | 6 cut(s) | 118, 857, 1122, 1720, 2863, 3042 |
| MfeI | CAATTG | 1 cut(s) | 3255 |
| MflI | RGATCY | 2 cut(s) | 2660, 3202 |
| MhlI | GDGCHC | 2 cut(s) | 1096, 3095 |
| Mly113I | GGCGCC | 1 cut(s) | 590 |
| MlyI | GAGTC | 9 cut(s) | 265, 384, 419, 614, 1210, 1919, 1924, 2241, 2981 |
| MmeI | TCCRAC | 5 cut(s) | 195, 1232, 1692, 1952, 2964 |
| MroI | TCCGGA | 1 cut(s) | 2188 |
| MroXI | GAANNNNTTC | 4 cut(s) | 580, 601, 895, 1177 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1791, 1866, 2043 |
| MspA1I | CMGCKG | 1 cut(s) | 95 |
| MspCI | CTTAAG | 1 cut(s) | 323 |
| MspI | CCGG | 4 cut(s) | 2010, 2189, 2664, 3104 |
| MspR9I | CCNGG | 5 cut(s) | 1197, 2027, 2144, 2665, 3105 |
| MunI | CAATTG | 1 cut(s) | 3255 |
| Mva1269I | GAATGC | 1 cut(s) | 1627 |
| MvaI | CCWGG | 3 cut(s) | 1197, 2027, 2144 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 155, 307, 1073, 1424, 1433, 2260, 2520 |
| NarI | GGCGCC | 1 cut(s) | 590 |
| NciI | CCSGG | 2 cut(s) | 2665, 3105 |
| NcoI | CCATGG | 1 cut(s) | 2407 |
| NlaIV | GGNNCC | 7 cut(s) | 591, 604, 907, 1649, 2638, 2927, 3093 |
| NmuCI | GTSAC | 4 cut(s) | 118, 857, 1122, 1720 |
| NspI | RCATGY | 2 cut(s) | 1356, 1948 |
| PaeI | GCATGC | 1 cut(s) | 1948 |
| PaeR7I | CTCGAG | 2 cut(s) | 201, 2249 |
| PagI | TCATGA | 3 cut(s) | 609, 1396, 3247 |
| PceI | AGGCCT | 2 cut(s) | 1195, 1257 |
| PciSI | GCTCTTC | 1 cut(s) | 2760 |
| PctI | GAATGC | 1 cut(s) | 1627 |
| PdmI | GAANNNNTTC | 4 cut(s) | 580, 601, 895, 1177 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 599, 1884 |
| PleI | GAGTC | 9 cut(s) | 264, 383, 418, 614, 1209, 1918, 1924, 2241, 2981 |
| PluTI | GGCGCC | 1 cut(s) | 593 |
| PpsI | GAGTC | 9 cut(s) | 264, 383, 418, 614, 1209, 1918, 1924, 2241, 2981 |
| Ppu21I | YACGTR | 1 cut(s) | 2438 |
| PshBI | ATTAAT | 1 cut(s) | 2229 |
| Psp1406I | AACGTT | 2 cut(s) | 238, 975 |
| Psp6I | CCWGG | 3 cut(s) | 1195, 2025, 2142 |
| PspGI | CCWGG | 3 cut(s) | 1195, 2025, 2142 |
| PspN4I | GGNNCC | 7 cut(s) | 591, 604, 907, 1649, 2638, 2927, 3093 |
| PspOMI | GGGCCC | 1 cut(s) | 3091 |
| PspPI | GGNCC | 7 cut(s) | 906, 1457, 1648, 2365, 2926, 3091, 3092 |
| PspXI | VCTCGAGB | 2 cut(s) | 201, 2249 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 270, 302 |
| PstI | CTGCAG | 3 cut(s) | 871, 1018, 1078 |
| PstNI | CAGNNNCTG | 3 cut(s) | 68, 875, 2063 |
| PsuI | RGATCY | 2 cut(s) | 2660, 3202 |
| PvuII | CAGCTG | 1 cut(s) | 95 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1791, 1866, 2043 |
| SapI | GCTCTTC | 1 cut(s) | 2760 |
| Sau96I | GGNCC | 7 cut(s) | 906, 1457, 1648, 2365, 2926, 3091, 3092 |
| ScaI | AGTACT | 2 cut(s) | 438, 3211 |
| SchI | GAGTC | 9 cut(s) | 265, 384, 419, 614, 1210, 1919, 1924, 2241, 2981 |
| ScrFI | CCNGG | 5 cut(s) | 1197, 2027, 2144, 2665, 3105 |
| SduI | GDGCHC | 2 cut(s) | 1096, 3095 |
| SfaNI | GCATC | 6 cut(s) | 310, 1596, 1669, 2272, 2681, 3285 |
| SfcI | CTRYAG | 7 cut(s) | 546, 867, 1014, 1074, 2168, 2331, 2540 |
| SfoI | GGCGCC | 1 cut(s) | 591 |
| Sfr274I | CTCGAG | 2 cut(s) | 201, 2249 |
| SinI | GGWCC | 3 cut(s) | 906, 1457, 2365 |
| SlaI | CTCGAG | 2 cut(s) | 201, 2249 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1791, 1866, 2043 |
| SmlI | CTYRAG | 6 cut(s) | 103, 201, 323, 440, 2249, 3012 |
| SmoI | CTYRAG | 6 cut(s) | 103, 201, 323, 440, 2249, 3012 |
| SnaBI | TACGTA | 1 cut(s) | 2438 |
| SpeI | ACTAGT | 1 cut(s) | 2353 |
| SphI | GCATGC | 1 cut(s) | 1948 |
| SseBI | AGGCCT | 2 cut(s) | 1195, 1257 |
| SsiI | CCGC | 5 cut(s) | 76, 158, 782, 2122, 2648 |
| SspDI | GGCGCC | 1 cut(s) | 589 |
| SspI | AATATT | 2 cut(s) | 529, 1591 |
| StuI | AGGCCT | 2 cut(s) | 1195, 1257 |
| StyD4I | CCNGG | 5 cut(s) | 1195, 2025, 2142, 2663, 3103 |
| StyI | CCWWGG | 2 cut(s) | 2084, 2407 |
| TaaI | ACNGT | 6 cut(s) | 436, 479, 565, 2034, 2565, 2576 |
| TaiI | ACGT | 8 cut(s) | 52, 62, 241, 978, 2009, 2440, 2479, 2981 |
| TaqI | TCGA | 8 cut(s) | 202, 734, 1913, 2094, 2250, 2494, 2715, 3264 |
| TatI | WGTACW | 6 cut(s) | 343, 431, 436, 1985, 2896, 3209 |
| TauI | GCSGC | 1 cut(s) | 161 |
| TscAI | CASTG | 9 cut(s) | 69, 258, 770, 2039, 2581, 2754, 2968, 3154, 3192 |
| TseFI | GTSAC | 4 cut(s) | 118, 857, 1122, 1720 |
| Tsp45I | GTSAC | 4 cut(s) | 118, 857, 1122, 1720 |
| TspGWI | ACGGA | 5 cut(s) | 633, 927, 1905, 2356, 2748 |
| TspRI | CASTG | 9 cut(s) | 69, 258, 770, 2039, 2581, 2754, 2968, 3154, 3192 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 599, 1884 |
| Vha464I | CTTAAG | 1 cut(s) | 323 |
| VpaK11BI | GGWCC | 3 cut(s) | 906, 1457, 2365 |
| VspI | ATTAAT | 1 cut(s) | 2229 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 657 |
| XapI | RAATTY | 6 cut(s) | 1228, 1442, 2498, 2953, 3002, 3019 |
| XbaI | TCTAGA | 2 cut(s) | 616, 2486 |
| XceI | RCATGY | 2 cut(s) | 1356, 1948 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2414 |
| XhoI | CTCGAG | 2 cut(s) | 201, 2249 |
| XmaJI | CCTAGG | 1 cut(s) | 2084 |
| XmnI | GAANNNNTTC | 4 cut(s) | 580, 601, 895, 1177 |
| ZraI | GACGTC | 1 cut(s) | 60 |
| ZrmI | AGTACT | 2 cut(s) | 438, 3211 |