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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G22450 AT5G22450 AT5G22450 |
| fragaria_vesca | FvH4_3g24820 FvH4_3g24820 |
| malus_domestica | MD03G1143400.v1.1 MD11G1164200.v1.1 |
| prunus_persica | Prupe.6G129000_v2.0.a1 Prupe.6G129000_v2.0.a1 Prupe.6G129000_v2.0.a1 Prupe.6G129000_v2.0.a1 Prupe.6G129000_v2.0.a1 Prupe.6G129000_v2.0.a1 Prupe.6G129000_v2.0.a1 |
| pyrus_communis | pycom03g09860 pycom11g13560 |
| rosa_chinensis | RchiOBHm_Chr5g0044401 |
| rosa_laevigata | RLG00000034271 |
| rosa_multiflora | Rmu_sc0004741.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00036550 |
| rosa_rugosa | Rorug05G0213700 Rorug05G0213700 |
| rosa_samantha | Rh5AG298300 Rh5BG305600 Rh5CG332600 Rh5DG314800 |
| rosa_wichuraiana | Rw5G027600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 451 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1734 |
| AccI | GTMKAC | 1 cut(s) | 480 |
| AccII | CGCG | 1 cut(s) | 1287 |
| AccIII | TCCGGA | 1 cut(s) | 2459 |
| AciI | CCGC | 8 cut(s) | 557, 652, 1381, 1898, 2051, 2131, 2529, 2811 |
| AclI | AACGTT | 1 cut(s) | 100 |
| AclWI | GGATC | 5 cut(s) | 87, 2378, 2518, 2628, 2641 |
| AcsI | RAATTY | 3 cut(s) | 1550, 1880, 3031 |
| AcuI | CTGAAG | 2 cut(s) | 500, 809 |
| AdeI | CACNNNGTG | 1 cut(s) | 2908 |
| AfaI | GTAC | 5 cut(s) | 289, 300, 424, 1640, 1951 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 461, 506, 657, 969, 1734 |
| AflIII | ACRYGT | 2 cut(s) | 1365, 2305 |
| AhlI | ACTAGT | 1 cut(s) | 2206 |
| AjnI | CCWGG | 5 cut(s) | 232, 1052, 1921, 1995, 2953 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1326, 1358, 2129, 2161 |
| Alw21I | GWGCWC | 1 cut(s) | 775 |
| Alw26I | GTCTC | 3 cut(s) | 448, 679, 2039 |
| AlwI | GGATC | 5 cut(s) | 87, 2378, 2518, 2628, 2641 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2519 |
| Ama87I | CYCGRG | 1 cut(s) | 2841 |
| Aor13HI | TCCGGA | 1 cut(s) | 2459 |
| AoxI | GGCC | 6 cut(s) | 615, 1055, 1724, 2110, 2942, 3049 |
| ApaI | GGGCCC | 1 cut(s) | 1728 |
| ApeKI | GCWGC | 7 cut(s) | 529, 1271, 1384, 1454, 2020, 2677, 3016 |
| ApoI | RAATTY | 3 cut(s) | 1550, 1880, 3031 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1522, 1554 |
| AseI | ATTAAT | 3 cut(s) | 570, 2082, 3066 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 463, 751, 2701 |
| AspA2I | CCTAGG | 1 cut(s) | 1937 |
| AspLEI | GCGC | 1 cut(s) | 2331 |
| AsuC2I | CCSGG | 1 cut(s) | 1059 |
| AvaI | CYCGRG | 1 cut(s) | 2841 |
| AvaII | GGWCC | 6 cut(s) | 762, 1034, 1313, 2218, 2773, 2992 |
| AvrII | CCTAGG | 1 cut(s) | 1937 |
| BaeGI | GKGCMC | 2 cut(s) | 454, 1728 |
| BamHI | GGATCC | 1 cut(s) | 2633 |
| BanI | GGYRCC | 1 cut(s) | 451 |
| BanII | GRGCYC | 1 cut(s) | 1728 |
| BauI | CACGAG | 1 cut(s) | 1200 |
| BbsI | GAAGAC | 3 cut(s) | 1122, 1535, 1626 |
| Bbv12I | GWGCWC | 1 cut(s) | 775 |
| BbvCI | CCTCAGC | 1 cut(s) | 1398 |
| BbvI | GCAGC | 7 cut(s) | 541, 1258, 1396, 1441, 2007, 2664, 3028 |
| BccI | CCATC | 4 cut(s) | 971, 995, 3031, 3104 |
| BceAI | ACGGC | 2 cut(s) | 1284, 2244 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1166, 1200, 2238, 2272 |
| BciT130I | CCWGG | 5 cut(s) | 234, 1054, 1923, 1997, 2955 |
| BclI | TGATCA | 1 cut(s) | 1249 |
| BcnI | CCSGG | 1 cut(s) | 1059 |
| BcoDI | GTCTC | 3 cut(s) | 448, 679, 2039 |
| BcuI | ACTAGT | 1 cut(s) | 2206 |
| BfmI | CTRYAG | 8 cut(s) | 267, 294, 606, 930, 1670, 2021, 2184, 2393 |
| BglII | AGATCT | 1 cut(s) | 3079 |
| BisI | GCNGC | 9 cut(s) | 530, 558, 1272, 1382, 1385, 1455, 2021, 2678, 3017 |
| BlnI | CCTAGG | 1 cut(s) | 1937 |
| BlsI | GCNGC | 9 cut(s) | 531, 559, 1273, 1383, 1386, 1456, 2022, 2679, 3018 |
| BmcAI | AGTACT | 3 cut(s) | 300, 424, 1951 |
| Bme1390I | CCNGG | 6 cut(s) | 234, 1054, 1059, 1923, 1997, 2955 |
| Bme18I | GGWCC | 6 cut(s) | 762, 1034, 1313, 2218, 2773, 2992 |
| BmeT110I | CYCGRG | 1 cut(s) | 2841 |
| BmiI | GGNNCC | 9 cut(s) | 453, 466, 763, 1035, 1726, 2458, 2635, 2994, 3052 |
| BmrFI | CCNGG | 6 cut(s) | 234, 1054, 1059, 1923, 1997, 2955 |
| BmrI | ACTGGG | 4 cut(s) | 573, 613, 878, 2900 |
| BmsI | GCATC | 5 cut(s) | 1117, 1279, 1885, 1933, 2476 |
| BmuI | ACTGGG | 4 cut(s) | 573, 613, 878, 2900 |
| BpiI | GAAGAC | 3 cut(s) | 1122, 1535, 1626 |
| BpmI | CTGGAG | 5 cut(s) | 84, 255, 528, 2036, 2123 |
| Bpu10I | CCTNAGC | 4 cut(s) | 925, 1398, 1712, 2805 |
| BpuEI | CTTGAG | 3 cut(s) | 287, 2309, 2692 |
| BpuMI | CCSGG | 1 cut(s) | 1059 |
| BsaBI | GATNNNNATC | 2 cut(s) | 223, 1248 |
| BsaI | GGTCTC | 1 cut(s) | 448 |
| BsaJI | CCNNGG | 5 cut(s) | 49, 1937, 2260, 2842, 2997 |
| BsaWI | WCCGGW | 1 cut(s) | 2459 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 990, 1020, 2061, 2091 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 461, 506, 657, 969, 1734 |
| Bse1I | ACTGG | 9 cut(s) | 541, 568, 619, 859, 873, 1275, 1978, 2106, 2906 |
| Bse3DI | GCAATG | 4 cut(s) | 594, 918, 2220, 2238 |
| Bse8I | GATNNNNATC | 2 cut(s) | 223, 1248 |
| BseAI | TCCGGA | 1 cut(s) | 2459 |
| BseBI | CCWGG | 5 cut(s) | 234, 1054, 1923, 1997, 2955 |
| BseDI | CCNNGG | 5 cut(s) | 49, 1937, 2260, 2842, 2997 |
| BseGI | GGATG | 4 cut(s) | 151, 1948, 2005, 3160 |
| BseJI | GATNNNNATC | 2 cut(s) | 223, 1248 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 461, 506, 657, 969, 1734 |
| BseMI | GCAATG | 4 cut(s) | 594, 918, 2220, 2238 |
| BseMII | CTCAG | 8 cut(s) | 164, 716, 1366, 1371, 1379, 1389, 1703, 2819 |
| BseNI | ACTGG | 9 cut(s) | 541, 568, 619, 859, 873, 1275, 1978, 2106, 2906 |
| BseRI | GAGGAG | 1 cut(s) | 1415 |
| BseSI | GKGCMC | 2 cut(s) | 454, 1728 |
| BseXI | GCAGC | 7 cut(s) | 541, 1258, 1396, 1441, 2007, 2664, 3028 |
| BseYI | CCCAGC | 3 cut(s) | 944, 2629, 2871 |
| BsgI | GTGCAG | 1 cut(s) | 2595 |
| Bsh1236I | CGCG | 1 cut(s) | 1287 |
| BshFI | GGCC | 6 cut(s) | 617, 1057, 1726, 2112, 2944, 3051 |
| BshNI | GGYRCC | 1 cut(s) | 451 |
| BsiHKAI | GWGCWC | 1 cut(s) | 775 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2841 |
| BsiSI | CCGG | 2 cut(s) | 1059, 2460 |
| BslFI | GGGAC | 4 cut(s) | 34, 775, 916, 1751 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 461, 506, 657, 969, 1734 |
| BsmAI | GTCTC | 3 cut(s) | 448, 679, 2039 |
| BsmFI | GGGAC | 4 cut(s) | 34, 775, 916, 1751 |
| BsmI | GAATGC | 4 cut(s) | 835, 1062, 2920, 2971 |
| BsnI | GGCC | 6 cut(s) | 617, 1057, 1726, 2112, 2944, 3051 |
| Bso31I | GGTCTC | 1 cut(s) | 448 |
| BsoBI | CYCGRG | 1 cut(s) | 2841 |
| Bsp120I | GGGCCC | 1 cut(s) | 1724 |
| Bsp1286I | GDGCHC | 3 cut(s) | 454, 775, 1728 |
| Bsp13I | TCCGGA | 1 cut(s) | 2459 |
| Bsp1407I | TGTACA | 1 cut(s) | 1638 |
| Bsp19I | CCATGG | 2 cut(s) | 49, 2997 |
| Bsp68I | TCGCGA | 1 cut(s) | 1287 |
| BspACI | CCGC | 8 cut(s) | 557, 652, 1381, 1898, 2051, 2131, 2529, 2811 |
| BspANI | GGCC | 6 cut(s) | 617, 1057, 1726, 2112, 2944, 3051 |
| BspCNI | CTCAG | 8 cut(s) | 165, 715, 1365, 1370, 1380, 1390, 1704, 2818 |
| BspEI | TCCGGA | 1 cut(s) | 2459 |
| BspFNI | CGCG | 1 cut(s) | 1287 |
| BspHI | TCATGA | 1 cut(s) | 1252 |
| BspLI | GGNNCC | 9 cut(s) | 453, 466, 763, 1035, 1726, 2458, 2635, 2994, 3052 |
| BspMAI | CTGCAG | 3 cut(s) | 2025, 2188, 2397 |
| BspPI | GGATC | 5 cut(s) | 87, 2378, 2518, 2628, 2641 |
| BspQI | GCTCTTC | 2 cut(s) | 2592, 3036 |
| BspT107I | GGYRCC | 1 cut(s) | 451 |
| BspTNI | GGTCTC | 1 cut(s) | 448 |
| BsrDI | GCAATG | 4 cut(s) | 594, 918, 2220, 2238 |
| BsrGI | TGTACA | 1 cut(s) | 1638 |
| BsrI | ACTGG | 9 cut(s) | 541, 568, 619, 859, 873, 1275, 1978, 2106, 2906 |
| BssECI | CCNNGG | 5 cut(s) | 49, 1937, 2260, 2842, 2997 |
| BssSI | CACGAG | 1 cut(s) | 1200 |
| BssT1I | CCWWGG | 3 cut(s) | 49, 1937, 2997 |
| Bst2BI | CACGAG | 1 cut(s) | 1200 |
| Bst2UI | CCWGG | 5 cut(s) | 234, 1054, 1923, 1997, 2955 |
| Bst6I | CTCTTC | 5 cut(s) | 2352, 2416, 2592, 2660, 3036 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 589, 2373 |
| BstAUI | TGTACA | 1 cut(s) | 1638 |
| BstC8I | GCNNGC | 8 cut(s) | 412, 585, 784, 1285, 1306, 2257, 2946, 3116 |
| BstDSI | CCRYGG | 3 cut(s) | 49, 2260, 2997 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 459 |
| BstF5I | GGATG | 4 cut(s) | 151, 1948, 2005, 3160 |
| BstFNI | CGCG | 1 cut(s) | 1287 |
| BstHHI | GCGC | 1 cut(s) | 2331 |
| BstMAI | GTCTC | 3 cut(s) | 448, 679, 2039 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 589, 717, 779, 1280, 1289, 1305, 2373 |
| BstNI | CCWGG | 5 cut(s) | 234, 1054, 1923, 1997, 2955 |
| BstNSI | RCATGY | 6 cut(s) | 1308, 1369, 2259, 2309, 2424, 2481 |
| BstSCI | CCNGG | 6 cut(s) | 232, 1052, 1057, 1921, 1995, 2953 |
| BstSFI | CTRYAG | 8 cut(s) | 267, 294, 606, 930, 1670, 2021, 2184, 2393 |
| BstSLI | GKGCMC | 2 cut(s) | 454, 1728 |
| BstUI | CGCG | 1 cut(s) | 1287 |
| BstV1I | GCAGC | 7 cut(s) | 541, 1258, 1396, 1441, 2007, 2664, 3028 |
| BstV2I | GAAGAC | 3 cut(s) | 1122, 1535, 1626 |
| BstX2I | RGATCY | 2 cut(s) | 2633, 3079 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 626 |
| BstYI | RGATCY | 2 cut(s) | 2633, 3079 |
| BsuRI | GGCC | 6 cut(s) | 617, 1057, 1726, 2112, 2944, 3051 |
| BtgI | CCRYGG | 3 cut(s) | 49, 2260, 2997 |
| BtgZI | GCGATG | 1 cut(s) | 1302 |
| BtsCI | GGATG | 4 cut(s) | 151, 1948, 2005, 3160 |
| BtsI | GCAGTG | 2 cut(s) | 120, 919 |
| BtsIMutI | CAGTG | 5 cut(s) | 120, 626, 919, 1868, 2913 |
| BtuMI | TCGCGA | 1 cut(s) | 1287 |
| Cac8I | GCNNGC | 8 cut(s) | 412, 585, 784, 1285, 1306, 2257, 2946, 3116 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2519 |
| CciI | TCATGA | 1 cut(s) | 1252 |
| CfoI | GCGC | 1 cut(s) | 2331 |
| CsiI | ACCWGGT | 1 cut(s) | 2953 |
| Csp6I | GTAC | 5 cut(s) | 288, 299, 423, 1639, 1950 |
| CviQI | GTAC | 5 cut(s) | 288, 299, 423, 1639, 1950 |
| DraIII | CACNNNGTG | 1 cut(s) | 2908 |
| Eam1104I | CTCTTC | 5 cut(s) | 2352, 2416, 2592, 2660, 3036 |
| EarI | CTCTTC | 5 cut(s) | 2352, 2416, 2592, 2660, 3036 |
| EciI | GGCGGA | 2 cut(s) | 2146, 2826 |
| Eco130I | CCWWGG | 3 cut(s) | 49, 1937, 2997 |
| Eco147I | AGGCCT | 1 cut(s) | 2112 |
| Eco24I | GRGCYC | 1 cut(s) | 1728 |
| Eco31I | GGTCTC | 1 cut(s) | 448 |
| Eco47I | GGWCC | 6 cut(s) | 762, 1034, 1313, 2218, 2773, 2992 |
| Eco57I | CTGAAG | 2 cut(s) | 500, 809 |
| Eco88I | CYCGRG | 1 cut(s) | 2841 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 459 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2992, 3050 |
| EcoRII | CCWGG | 5 cut(s) | 232, 1052, 1921, 1995, 2953 |
| EcoT14I | CCWWGG | 3 cut(s) | 49, 1937, 2997 |
| EcoT38I | GRGCYC | 1 cut(s) | 1728 |
| ErhI | CCWWGG | 3 cut(s) | 49, 1937, 2997 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2129, 2161, 2664, 2696, 2701, 2733 |
| FaqI | GGGAC | 4 cut(s) | 34, 775, 916, 1751 |
| FauI | CCCGC | 3 cut(s) | 659, 1891, 2522 |
| FauNDI | CATATG | 1 cut(s) | 844 |
| FbaI | TGATCA | 1 cut(s) | 1249 |
| FblI | GTMKAC | 1 cut(s) | 480 |
| Fnu4HI | GCNGC | 9 cut(s) | 530, 558, 1272, 1382, 1385, 1455, 2021, 2678, 3017 |
| FokI | GGATG | 4 cut(s) | 158, 1955, 2012, 3167 |
| FriOI | GRGCYC | 1 cut(s) | 1728 |
| Fsp4HI | GCNGC | 9 cut(s) | 530, 558, 1272, 1382, 1385, 1455, 2021, 2678, 3017 |
| GlaI | GCGC | 1 cut(s) | 2330 |
| GluI | GCNGC | 9 cut(s) | 530, 558, 1272, 1382, 1385, 1455, 2021, 2678, 3017 |
| GsaI | CCCAGC | 3 cut(s) | 948, 2633, 2875 |
| GsuI | CTGGAG | 5 cut(s) | 84, 255, 528, 2036, 2123 |
| HaeIII | GGCC | 6 cut(s) | 617, 1057, 1726, 2112, 2944, 3051 |
| HapII | CCGG | 2 cut(s) | 1059, 2460 |
| HhaI | GCGC | 1 cut(s) | 2331 |
| Hin6I | GCGC | 1 cut(s) | 2329 |
| HinP1I | GCGC | 1 cut(s) | 2329 |
| HincII | GTYRAC | 6 cut(s) | 852, 1050, 1928, 2446, 2602, 2728 |
| HindII | GTYRAC | 6 cut(s) | 852, 1050, 1928, 2446, 2602, 2728 |
| HindIII | AAGCTT | 2 cut(s) | 1957, 2143 |
| HpaII | CCGG | 2 cut(s) | 1059, 2460 |
| Hpy99I | CGWCG | 2 cut(s) | 1014, 1721 |
| HpyAV | CCTTC | 5 cut(s) | 510, 1023, 1557, 1646, 2397 |
| HpyCH4IV | ACGT | 2 cut(s) | 100, 1719 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 589, 717, 779, 1280, 1289, 1305, 2373 |
| HpySE526I | ACGT | 2 cut(s) | 100, 1719 |
| HspAI | GCGC | 1 cut(s) | 2329 |
| Kpn2I | TCCGGA | 1 cut(s) | 2459 |
| Ksp22I | TGATCA | 1 cut(s) | 1249 |
| LguI | GCTCTTC | 2 cut(s) | 2592, 3036 |
| Lsp1109I | GCAGC | 7 cut(s) | 541, 1258, 1396, 1441, 2007, 2664, 3028 |
| LweI | GCATC | 5 cut(s) | 1117, 1279, 1885, 1933, 2476 |
| MabI | ACCWGGT | 1 cut(s) | 2953 |
| MaeII | ACGT | 2 cut(s) | 100, 1719 |
| MaeIII | GTNAC | 6 cut(s) | 148, 189, 325, 914, 1576, 1706 |
| MflI | RGATCY | 2 cut(s) | 2633, 3079 |
| MhlI | GDGCHC | 3 cut(s) | 454, 775, 1728 |
| MlyI | GAGTC | 6 cut(s) | 281, 476, 1033, 1399, 1769, 2597 |
| MmeI | TCCRAC | 7 cut(s) | 237, 492, 1061, 1548, 1779, 1988, 2413 |
| MroI | TCCGGA | 1 cut(s) | 2459 |
| MroXI | GAANNNNTTC | 3 cut(s) | 463, 751, 2701 |
| MseI | TTAA | 6 cut(s) | 221, 432, 570, 1512, 2082, 3066 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1872, 1893, 1908, 2419 |
| MspA1I | CMGCKG | 3 cut(s) | 344, 1387, 2529 |
| MspI | CCGG | 2 cut(s) | 1059, 2460 |
| MspR9I | CCNGG | 6 cut(s) | 234, 1054, 1059, 1923, 1997, 2955 |
| Mva1269I | GAATGC | 4 cut(s) | 835, 1062, 2920, 2971 |
| MvaI | CCWGG | 5 cut(s) | 234, 1054, 1923, 1997, 2955 |
| MvnI | CGCG | 1 cut(s) | 1287 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 589, 717, 779, 1280, 1289, 1305, 2373 |
| NciI | CCSGG | 1 cut(s) | 1059 |
| NcoI | CCATGG | 2 cut(s) | 49, 2997 |
| NdeI | CATATG | 1 cut(s) | 844 |
| NlaIV | GGNNCC | 9 cut(s) | 453, 466, 763, 1035, 1726, 2458, 2635, 2994, 3052 |
| NmuCI | GTSAC | 1 cut(s) | 914 |
| NruI | TCGCGA | 1 cut(s) | 1287 |
| NspI | RCATGY | 6 cut(s) | 1308, 1369, 2259, 2309, 2424, 2481 |
| PaeI | GCATGC | 2 cut(s) | 1308, 2259 |
| PagI | TCATGA | 1 cut(s) | 1252 |
| PceI | AGGCCT | 1 cut(s) | 2112 |
| PciI | ACATGT | 2 cut(s) | 1365, 2305 |
| PciSI | GCTCTTC | 2 cut(s) | 2592, 3036 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1875 |
| PctI | GAATGC | 4 cut(s) | 835, 1062, 2920, 2971 |
| PdmI | GAANNNNTTC | 3 cut(s) | 463, 751, 2701 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1734 |
| PfoI | TCCNGGA | 1 cut(s) | 232 |
| PkrI | GCNGC | 9 cut(s) | 531, 559, 1273, 1383, 1386, 1456, 2022, 2679, 3018 |
| PleI | GAGTC | 6 cut(s) | 280, 476, 1033, 1398, 1768, 2597 |
| PpsI | GAGTC | 6 cut(s) | 280, 476, 1033, 1398, 1768, 2597 |
| PpuMI | RGGWCCY | 1 cut(s) | 2992 |
| PscI | ACATGT | 2 cut(s) | 1365, 2305 |
| PshBI | ATTAAT | 3 cut(s) | 570, 2082, 3066 |
| Psp1406I | AACGTT | 1 cut(s) | 100 |
| Psp5II | RGGWCCY | 1 cut(s) | 2992 |
| Psp6I | CCWGG | 5 cut(s) | 232, 1052, 1921, 1995, 2953 |
| PspFI | CCCAGC | 3 cut(s) | 944, 2629, 2871 |
| PspGI | CCWGG | 5 cut(s) | 232, 1052, 1921, 1995, 2953 |
| PspN4I | GGNNCC | 9 cut(s) | 453, 466, 763, 1035, 1726, 2458, 2635, 2994, 3052 |
| PspOMI | GGGCCC | 1 cut(s) | 1724 |
| PspPPI | RGGWCCY | 1 cut(s) | 2992 |
| PstI | CTGCAG | 3 cut(s) | 2025, 2188, 2397 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2519 |
| PsuI | RGATCY | 2 cut(s) | 2633, 3079 |
| PvuII | CAGCTG | 2 cut(s) | 344, 1387 |
| RruI | TCGCGA | 1 cut(s) | 1287 |
| RsaI | GTAC | 5 cut(s) | 289, 300, 424, 1640, 1951 |
| RsaNI | GTAC | 5 cut(s) | 288, 299, 423, 1639, 1950 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1872, 1893, 1908, 2419 |
| SapI | GCTCTTC | 2 cut(s) | 2592, 3036 |
| SaqAI | TTAA | 6 cut(s) | 221, 432, 570, 1512, 2082, 3066 |
| SatI | GCNGC | 9 cut(s) | 530, 558, 1272, 1382, 1385, 1455, 2021, 2678, 3017 |
| ScaI | AGTACT | 3 cut(s) | 300, 424, 1951 |
| SchI | GAGTC | 6 cut(s) | 281, 476, 1033, 1399, 1769, 2597 |
| ScrFI | CCNGG | 6 cut(s) | 234, 1054, 1059, 1923, 1997, 2955 |
| SduI | GDGCHC | 3 cut(s) | 454, 775, 1728 |
| SexAI | ACCWGGT | 1 cut(s) | 2953 |
| SfaNI | GCATC | 5 cut(s) | 1117, 1279, 1885, 1933, 2476 |
| SfcI | CTRYAG | 8 cut(s) | 267, 294, 606, 930, 1670, 2021, 2184, 2393 |
| SinI | GGWCC | 6 cut(s) | 762, 1034, 1313, 2218, 2773, 2992 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1872, 1893, 1908, 2419 |
| SmlI | CTYRAG | 4 cut(s) | 302, 2324, 2707, 3169 |
| SmoI | CTYRAG | 4 cut(s) | 302, 2324, 2707, 3169 |
| SpeI | ACTAGT | 1 cut(s) | 2206 |
| SphI | GCATGC | 2 cut(s) | 1308, 2259 |
| SseBI | AGGCCT | 1 cut(s) | 2112 |
| SsiI | CCGC | 8 cut(s) | 557, 652, 1381, 1898, 2051, 2131, 2529, 2811 |
| StuI | AGGCCT | 1 cut(s) | 2112 |
| StyD4I | CCNGG | 6 cut(s) | 232, 1052, 1057, 1921, 1995, 2953 |
| StyI | CCWWGG | 3 cut(s) | 49, 1937, 2997 |
| TaiI | ACGT | 2 cut(s) | 103, 1722 |
| TaqI | TCGA | 7 cut(s) | 457, 1526, 1763, 1855, 1988, 2347, 3035 |
| TatI | WGTACW | 4 cut(s) | 298, 422, 1638, 1949 |
| TauI | GCSGC | 2 cut(s) | 560, 1384 |
| Tru1I | TTAA | 6 cut(s) | 221, 432, 570, 1512, 2082, 3066 |
| Tru9I | TTAA | 6 cut(s) | 221, 432, 570, 1512, 2082, 3066 |
| TscAI | CASTG | 5 cut(s) | 120, 626, 919, 1868, 2913 |
| TseFI | GTSAC | 1 cut(s) | 914 |
| TseI | GCWGC | 7 cut(s) | 529, 1271, 1384, 1454, 2020, 2677, 3016 |
| Tsp45I | GTSAC | 1 cut(s) | 914 |
| TspGWI | ACGGA | 2 cut(s) | 1884, 2209 |
| TspRI | CASTG | 5 cut(s) | 120, 626, 919, 1868, 2913 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1734 |
| VpaK11BI | GGWCC | 6 cut(s) | 762, 1034, 1313, 2218, 2773, 2992 |
| VspI | ATTAAT | 3 cut(s) | 570, 2082, 3066 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 459 |
| XapI | RAATTY | 3 cut(s) | 1550, 1880, 3031 |
| XceI | RCATGY | 6 cut(s) | 1308, 1369, 2259, 2309, 2424, 2481 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 560, 3131 |
| XmaJI | CCTAGG | 1 cut(s) | 1937 |
| XmiI | GTMKAC | 1 cut(s) | 480 |
| XmnI | GAANNNNTTC | 3 cut(s) | 463, 751, 2701 |
| ZrmI | AGTACT | 3 cut(s) | 300, 424, 1951 |