Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0015577

Physical Location & Seq

Genomic Coordinates Forward (+)

10743059 .. 10745109

Gene Structure 2051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G135000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

ATGGCCACCCTTTTCAGGCCGTTTTCACCTCCACCAGCAGCAAAAGCTAGTCAATTCAATTTCTCTGATTCATCAAACTCTCCATTTTCTATTCCAAAAACCCATCACCCATCTTCAAGAAAATCTTTCTCCAAAATCCAAAGCAGCAAGTTTGGCAATTTCCTTGACTTGAAACCCGAATCAAAACCCGAGTTCTTCGATTTCGACCTCCCCAAATTCGACCCATCAAGCCGTTCTCGCTTGGACGTGATTATAATCGGCACAGGCCCTGCTGGGCTTCGTCTTGCAGAGCAGGTTTCAAGCTATGGCATTAAGGTATGTTGTGTTGATCCTTCACCCCTTTCTATGTGGCCAAATAACTATGGTGTCTGGGTCGATGAGTTTGAAAGCTTGAACCTTGAAAATTGCTTAGACAAAACATGGCCTATGGCTTGCGTTCATGTTGATGACAATAAGACCAAGTATTTGGACCGTCCTTATGGTAGAGTCAGTAGGAAGAAACTCAAGACTCTGTTATTGGAGAGATGTCTCTCCAATGGGGTTCAATTTCACAGGGCCAAGGTGTGGAAAATTCAGCACCAAGAGTTTGAGTCTTCGATTTTGTGTGACGATGGGAATGAGCTCAAGGCAAGCTTGGTTGTTGATGCTAGTGGGTTTGCTAGCAGTTTTATAGAGTATGAGAAGCCAAGGAACCATGGGTATCAGATTGCTCATGGTATTTTGGCTGAAGTGGAAGAACACCCCTTTGATTTGGATAAGATGCTTCTGATGGATTGGAGAAATTCCCATCTTGGAAATGAACCTTATTTGCGTACTAGTAATTCTAAATTTCCGACGTTTCTCTACGCTATGCCATTTGATTCAAACTTGGTATTCTTAGAAGAAACTTCACTTGTTAGTAGGCCAGTGTTATCTTATATAGAGGTTAAGAAACGAATGGTTGCGAGGCTAAGGCATTTGGGAATTAGGGTGAAGAGGATAATTGAAGATGAGAAGTGTTTGATCCCAATGGGAGGCCCTCTTCCCCGGATCCCCCAAAGTGTGATGGCAATTGGAGGGACTTCTGGGGTCGTCCACCCTTCAACTGGGTACATGGTGGCTCGGACCATGGCTCTAGCCCCGATATTGGCTGAGGCCATTGCAGAGTGCCTTGGCTCAACCCGAATGATTAGAGGGCAGCCACTTTATCATAAAGCATGGAATGGCTTGTGGCCAATTGAAAGGAGATGTGTACGGGAGTTTTACTCTTTTGGTATGGAGACTTTGTTAAAGCTTGATCTGGATGGGAGTAGAAGGTTCTTTGATGCTTTCTTTGACTTGGATCCTTATTACTGGCACGGGTTTCTCTCCTCAAGGTTGTCCCTTAGAGAGCTTGCTTTGTTGAGTTTATCGCTGTTTGGCCGTGCCTCTTTCCCATCTAGGTTCGATATTGTTACAAAGTGTCCCTTGCCTTTGGTTAAACTGATGGGTAATCTAGCACTTGAAGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009687 GO:0009688 GO:0009987 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016853 GO:0016860 GO:0019752 GO:0032787 GO:0034020 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046165 GO:0046394 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Lycopene_cycl Trp_halogenase

Protein Analysis

498

Amino Acids

56.34

Weight (kDa)

8.76

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015577)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25490
malus_domestica	MD03G1148700.v1.1 MD11G1168000.v1.1
prunus_persica	Prupe.6G135000_v2.0.a1
pyrus_communis	pycom03g10310 pycom11g14030
rosa_chinensis	RchiOBHm_Chr5g0046551
rosa_laevigata	RLG00000034417
rosa_multiflora	Rmu_sc0003878.1_g000038
rosa_roxburghii	Rroxscaffold_1G00034850
rosa_rugosa	Rorug05G0229500
rosa_samantha	Rh5AG309800 Rh5BG318200 Rh5CG343900 Rh5DG328500
rosa_wichuraiana	Rw5G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	283
AccB7I	CCANNNNNTGG	1 cut(s)	564
AclWI	GGATC	6 cut(s)	323, 997, 1024, 1037, 1316, 1329
AcoI	YGGCCR	4 cut(s)	3, 350, 1211, 1399
AcsI	RAATTY	4 cut(s)	215, 570, 781, 827
AcuI	CTGAAG	1 cut(s)	747
AfaI	GTAC	3 cut(s)	814, 1091, 1233
AfiI	CCNNNNNNNGG	5 cut(s)	15, 564, 1013, 1085, 1126
AhlI	ACTAGT	1 cut(s)	815
AjiI	CACGTC	1 cut(s)	247
AluBI	AGCT	8 cut(s)	47, 303, 390, 622, 633, 1273, 1372, 1487
AluI	AGCT	8 cut(s)	47, 303, 390, 622, 633, 1273, 1372, 1487
Alw21I	GWGCWC	1 cut(s)	624
Alw26I	GTCTC	2 cut(s)	533, 1253
AlwI	GGATC	6 cut(s)	323, 997, 1024, 1037, 1316, 1329
AlwNI	CAGNNNCTG	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	188
ApeKI	GCWGC	4 cut(s)	38, 144, 1177, 1487
ApoI	RAATTY	4 cut(s)	215, 570, 781, 827
ArsI	GACNNNNNNTTYG	2 cut(s)	448, 480
AspS9I	GGNCC	5 cut(s)	266, 469, 555, 1016, 1104
AsuC2I	CCSGG	1 cut(s)	1027
AsuHPI	GGTGA	4 cut(s)	18, 98, 327, 982
AsuNHI	GCTAGC	1 cut(s)	659
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	469, 1104
BalI	TGGCCA	3 cut(s)	5, 352, 1213
BamHI	GGATCC	2 cut(s)	1029, 1321
BanII	GRGCYC	1 cut(s)	624
BbsI	GAAGAC	1 cut(s)	585
Bbv12I	GWGCWC	1 cut(s)	624
BbvCI	CCTCAGC	1 cut(s)	1131
BbvI	GCAGC	4 cut(s)	50, 156, 1189, 1474
BceAI	ACGGC	3 cut(s)	4, 216, 1386
BcnI	CCSGG	1 cut(s)	1027
BcoDI	GTCTC	2 cut(s)	533, 1253
BcuI	ACTAGT	1 cut(s)	815
BfaI	CTAG	7 cut(s)	48, 648, 660, 816, 1115, 1419, 1475
BfuAI	ACCTGC	1 cut(s)	283
BisI	GCNGC	4 cut(s)	39, 145, 1178, 1488
BlsI	GCNGC	4 cut(s)	40, 146, 1179, 1489
Bme1390I	CCNGG	1 cut(s)	1027
Bme18I	GGWCC	2 cut(s)	469, 1104
BmeT110I	CYCGRG	1 cut(s)	188
BmgBI	CACGTC	1 cut(s)	247
BmgT120I	GGNCC	5 cut(s)	266, 469, 555, 1016, 1104
BmiI	GGNNCC	3 cut(s)	692, 1031, 1323
BmrFI	CCNGG	1 cut(s)	1027
BmrI	ACTGGG	1 cut(s)	1095
BmsI	GCATC	3 cut(s)	634, 750, 1294
BmtI	GCTAGC	1 cut(s)	663
BmuI	ACTGGG	1 cut(s)	1095
BpiI	GAAGAC	1 cut(s)	585
BplI	GAGNNNNNCTC	2 cut(s)	1229, 1261
Bpu10I	CCTNAGC	2 cut(s)	950, 1131
BpuEI	CTTGAG	3 cut(s)	488, 608, 1336
BpuMI	CCSGG	1 cut(s)	1027
BsaBI	GATNNNNATC	1 cut(s)	254
BsaJI	CCNNGG	6 cut(s)	558, 686, 694, 1025, 1107, 1150
BsaXI	ACNNNNNCTCC	2 cut(s)	1250, 1280
Bsc4I	CCNNNNNNNGG	5 cut(s)	15, 564, 1013, 1085, 1126
Bse1I	ACTGG	3 cut(s)	905, 1090, 1337
Bse3DI	GCAATG	1 cut(s)	1137
Bse8I	GATNNNNATC	1 cut(s)	254
BseDI	CCNNGG	6 cut(s)	558, 686, 694, 1025, 1107, 1150
BseGI	GGATG	1 cut(s)	1288
BseJI	GATNNNNATC	1 cut(s)	254
BseLI	CCNNNNNNNGG	5 cut(s)	15, 564, 1013, 1085, 1126
BseMI	GCAATG	1 cut(s)	1137
BseMII	CTCAG	1 cut(s)	1122
BseNI	ACTGG	3 cut(s)	905, 1090, 1337
BseRI	GAGGAG	1 cut(s)	1339
BseXI	GCAGC	4 cut(s)	50, 156, 1189, 1474
BseYI	CCCAGC	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	624
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	1027
BslFI	GGGAC	3 cut(s)	1072, 1345, 1428
BslI	CCNNNNNNNGG	5 cut(s)	15, 564, 1013, 1085, 1126
BsmAI	GTCTC	2 cut(s)	533, 1253
BsmFI	GGGAC	3 cut(s)	1072, 1345, 1428
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	624
Bsp143I	GATC	5 cut(s)	328, 1002, 1029, 1276, 1321
Bsp19I	CCATGG	2 cut(s)	694, 1107
BspCNI	CTCAG	1 cut(s)	1123
BspLI	GGNNCC	3 cut(s)	692, 1031, 1323
BspMI	ACCTGC	1 cut(s)	283
BspOI	GCTAGC	1 cut(s)	663
BspPI	GGATC	6 cut(s)	323, 997, 1024, 1037, 1316, 1329
BsrDI	GCAATG	1 cut(s)	1137
BsrI	ACTGG	3 cut(s)	905, 1090, 1337
BssECI	CCNNGG	6 cut(s)	558, 686, 694, 1025, 1107, 1150
BssMI	GATC	5 cut(s)	328, 1002, 1029, 1276, 1321
BssT1I	CCWWGG	5 cut(s)	558, 686, 694, 1107, 1150
Bst4CI	ACNGT	1 cut(s)	473
Bst6I	CTCTTC	2 cut(s)	968, 1026
BstC8I	GCNNGC	4 cut(s)	433, 631, 661, 1374
BstDEI	CTNAG	5 cut(s)	409, 877, 950, 1131, 1364
BstDSI	CCRYGG	2 cut(s)	694, 1107
BstF5I	GGATG	1 cut(s)	1288
BstKTI	GATC	5 cut(s)	331, 1005, 1032, 1279, 1324
BstMAI	GTCTC	2 cut(s)	533, 1253
BstMBI	GATC	5 cut(s)	328, 1002, 1029, 1276, 1321
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 153, 237, 1484
BstSCI	CCNGG	1 cut(s)	1025
BstV1I	GCAGC	4 cut(s)	50, 156, 1189, 1474
BstV2I	GAAGAC	1 cut(s)	585
BstX2I	RGATCY	2 cut(s)	1029, 1321
BstXI	CCANNNNNNTGG	1 cut(s)	466
BstYI	RGATCY	2 cut(s)	1029, 1321
BtgI	CCRYGG	2 cut(s)	694, 1107
BtrI	CACGTC	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	1288
BtsIMutI	CAGTG	1 cut(s)	912
BveI	ACCTGC	1 cut(s)	283
Cac8I	GCNNGC	4 cut(s)	433, 631, 661, 1374
CaiI	CAGNNNCTG	1 cut(s)	269
Cfr13I	GGNCC	5 cut(s)	266, 469, 555, 1016, 1104
Csp6I	GTAC	3 cut(s)	813, 1090, 1232
CviAII	CATG	7 cut(s)	420, 440, 695, 713, 1093, 1108, 1197
CviQI	GTAC	3 cut(s)	813, 1090, 1232
DdeI	CTNAG	5 cut(s)	409, 877, 950, 1131, 1364
DpnI	GATC	5 cut(s)	330, 1004, 1031, 1278, 1323
DpnII	GATC	5 cut(s)	328, 1002, 1029, 1276, 1321
EaeI	YGGCCR	4 cut(s)	3, 350, 1211, 1399
Eam1104I	CTCTTC	2 cut(s)	968, 1026
EarI	CTCTTC	2 cut(s)	968, 1026
Ecl136II	GAGCTC	1 cut(s)	622
Eco130I	CCWWGG	5 cut(s)	558, 686, 694, 1107, 1150
Eco24I	GRGCYC	1 cut(s)	624
Eco47I	GGWCC	2 cut(s)	469, 1104
Eco53kI	GAGCTC	1 cut(s)	622
Eco57I	CTGAAG	1 cut(s)	747
Eco88I	CYCGRG	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	622
EcoO109I	RGGNCCY	2 cut(s)	266, 1016
EcoT14I	CCWWGG	5 cut(s)	558, 686, 694, 1107, 1150
EcoT38I	GRGCYC	1 cut(s)	624
ErhI	CCWWGG	5 cut(s)	558, 686, 694, 1107, 1150
FaeI	CATG	7 cut(s)	423, 443, 698, 716, 1096, 1111, 1200
FalI	AAGNNNNNCTT	6 cut(s)	109, 141, 617, 649, 1430, 1462
FaqI	GGGAC	3 cut(s)	1072, 1345, 1428
FatI	CATG	7 cut(s)	419, 439, 694, 712, 1092, 1107, 1196
Fnu4HI	GCNGC	4 cut(s)	39, 145, 1178, 1488
FokI	GGATG	1 cut(s)	1295
FriOI	GRGCYC	1 cut(s)	624
Fsp4HI	GCNGC	4 cut(s)	39, 145, 1178, 1488
FspBI	CTAG	7 cut(s)	48, 648, 660, 816, 1115, 1419, 1475
GluI	GCNGC	4 cut(s)	39, 145, 1178, 1488
GsaI	CCCAGC	1 cut(s)	276
HapII	CCGG	1 cut(s)	1027
Hin1II	CATG	7 cut(s)	423, 443, 698, 716, 1096, 1111, 1200
HindIII	AAGCTT	3 cut(s)	388, 631, 1271
HinfI	GANTC	6 cut(s)	68, 179, 486, 508, 590, 860
HpaII	CCGG	1 cut(s)	1027
HphI	GGTGA	4 cut(s)	18, 98, 327, 982
Hpy166II	GTNNAC	2 cut(s)	1075, 1232
Hpy188I	TCNGA	5 cut(s)	67, 705, 768, 834, 1104
Hpy188III	TCNNGA	3 cut(s)	117, 505, 1280
Hpy8I	GTNNAC	2 cut(s)	1075, 1232
Hpy99I	CGWCG	1 cut(s)	838
HpyAV	CCTTC	3 cut(s)	342, 1089, 1287
HpyCH4III	ACNGT	1 cut(s)	473
HpyCH4IV	ACGT	2 cut(s)	246, 836
HpyCH4V	TGCA	3 cut(s)	287, 1142, 1490
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 153, 237, 1484
HpyF3I	CTNAG	5 cut(s)	409, 877, 950, 1131, 1364
HpySE526I	ACGT	2 cut(s)	246, 836
Hsp92II	CATG	7 cut(s)	423, 443, 698, 716, 1096, 1111, 1200
Kzo9I	GATC	5 cut(s)	328, 1002, 1029, 1276, 1321
Lsp1109I	GCAGC	4 cut(s)	50, 156, 1189, 1474
LweI	GCATC	3 cut(s)	634, 750, 1294
MaeI	CTAG	7 cut(s)	48, 648, 660, 816, 1115, 1419, 1475
MaeII	ACGT	2 cut(s)	246, 836
MaeIII	GTNAC	2 cut(s)	605, 1432
MalI	GATC	5 cut(s)	330, 1004, 1031, 1278, 1323
MboI	GATC	5 cut(s)	328, 1002, 1029, 1276, 1321
MboII	GAAGA	9 cut(s)	105, 187, 508, 585, 746, 893, 985, 998, 1013
MfeI	CAATTG	2 cut(s)	1050, 1215
MflI	RGATCY	2 cut(s)	1029, 1321
MhlI	GDGCHC	1 cut(s)	624
MlsI	TGGCCA	3 cut(s)	5, 352, 1213
MluNI	TGGCCA	3 cut(s)	5, 352, 1213
MlyI	GAGTC	3 cut(s)	495, 502, 599
MmeI	TCCRAC	1 cut(s)	857
Mox20I	TGGCCA	3 cut(s)	5, 352, 1213
MscI	TGGCCA	3 cut(s)	5, 352, 1213
MseI	TTAA	4 cut(s)	312, 927, 1268, 1458
MslI	CAYNNNNRTG	1 cut(s)	444
Msp20I	TGGCCA	3 cut(s)	5, 352, 1213
MspI	CCGG	1 cut(s)	1027
MspR9I	CCNGG	1 cut(s)	1027
MunI	CAATTG	2 cut(s)	1050, 1215
MwoI	GCNNNNNNNGC	4 cut(s)	44, 153, 237, 1484
NciI	CCSGG	1 cut(s)	1027
NcoI	CCATGG	2 cut(s)	694, 1107
NdeII	GATC	5 cut(s)	328, 1002, 1029, 1276, 1321
NheI	GCTAGC	1 cut(s)	659
NlaIII	CATG	7 cut(s)	423, 443, 698, 716, 1096, 1111, 1200
NlaIV	GGNNCC	3 cut(s)	692, 1031, 1323
NmuCI	GTSAC	1 cut(s)	605
PfeI	GAWTC	3 cut(s)	68, 179, 860
PflMI	CCANNNNNTGG	1 cut(s)	564
PkrI	GCNGC	4 cut(s)	40, 146, 1179, 1489
PleI	GAGTC	3 cut(s)	494, 502, 598
PpsI	GAGTC	3 cut(s)	494, 502, 598
PsiI	TTATAA	1 cut(s)	254
Psp124BI	GAGCTC	1 cut(s)	624
PspFI	CCCAGC	1 cut(s)	272
PspN4I	GGNNCC	3 cut(s)	692, 1031, 1323
PspPI	GGNCC	5 cut(s)	266, 469, 555, 1016, 1104
PstNI	CAGNNNCTG	1 cut(s)	269
PsuI	RGATCY	2 cut(s)	1029, 1321
RsaI	GTAC	3 cut(s)	814, 1091, 1233
RsaNI	GTAC	3 cut(s)	813, 1090, 1232
RseI	CAYNNNNRTG	1 cut(s)	444
SacI	GAGCTC	1 cut(s)	624
SaqAI	TTAA	4 cut(s)	312, 927, 1268, 1458
SatI	GCNGC	4 cut(s)	39, 145, 1178, 1488
Sau3AI	GATC	5 cut(s)	328, 1002, 1029, 1276, 1321
Sau96I	GGNCC	5 cut(s)	266, 469, 555, 1016, 1104
SchI	GAGTC	3 cut(s)	495, 502, 599
ScrFI	CCNGG	1 cut(s)	1027
SduI	GDGCHC	1 cut(s)	624
SfaNI	GCATC	3 cut(s)	634, 750, 1294
SinI	GGWCC	2 cut(s)	469, 1104
SmiMI	CAYNNNNRTG	1 cut(s)	444
SmlI	CTYRAG	3 cut(s)	503, 623, 1351
SmoI	CTYRAG	3 cut(s)	503, 623, 1351
SpeI	ACTAGT	1 cut(s)	815
SspMI	CTAG	7 cut(s)	48, 648, 660, 816, 1115, 1419, 1475
SstI	GAGCTC	1 cut(s)	624
StyD4I	CCNGG	1 cut(s)	1025
StyI	CCWWGG	5 cut(s)	558, 686, 694, 1107, 1150
TaaI	ACNGT	1 cut(s)	473
TaiI	ACGT	2 cut(s)	249, 839
TaqI	TCGA	6 cut(s)	198, 204, 219, 375, 596, 1425
TfiI	GAWTC	3 cut(s)	68, 179, 860
Tru1I	TTAA	4 cut(s)	312, 927, 1268, 1458
Tru9I	TTAA	4 cut(s)	312, 927, 1268, 1458
TscAI	CASTG	1 cut(s)	912
TseFI	GTSAC	1 cut(s)	605
TseI	GCWGC	4 cut(s)	38, 144, 1177, 1487
Tsp45I	GTSAC	1 cut(s)	605
TspDTI	ATGAA	3 cut(s)	60, 428, 813
TspRI	CASTG	1 cut(s)	912
Van91I	CCANNNNNTGG	1 cut(s)	564
VpaK11BI	GGWCC	2 cut(s)	469, 1104
XapI	RAATTY	4 cut(s)	215, 570, 781, 827
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1082
XspI	CTAG	7 cut(s)	48, 648, 660, 816, 1115, 1419, 1475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.