Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003878.1

Orthogroup ID

OG0015577

Physical Location & Seq

Genomic Coordinates Forward (+)

166738 .. 168234

Gene Structure 1497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003878.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

atggacacccttgtcggattgttttcaccgccaccgccaccgccaccaccactaccaaccaaaacaagtcaactctttcatgcatccagtcctccattttctttgccaaagccccatcactcaagaaagagattttccagagtccaaagcaagtatggaaattttctggacttgaaaccagagtcaaaacctgaagtgttagactttgatctgccccggttggacccttctagccggtttcggtcagatgtgatcatcatcggcacaggccctgctggtcttcgtcttgctgagcaagtgtcacagtatggcatcaaggtatgttgtgttgatccttcacctctttctatgtggccaaataactatggtgtttgggttgatgagtttgagagcttggagcttgaaagttgcttagacaaaacatggcctatggcttgtgttcatattgatgataataagaccaagtatttggaccgtccttatggtcgagtcagtaggaagaaacttaagaatttgttgatggagaggtgtctctccaatggagtcaaatttcaccaggcaaaggtttggaaaattgagcacaaagagtttgagtctttgattttgtgtgatgatgggaatgagttgaaggcaagcttagttgttgatgccagtggttttgcaagcaatttcgtagagtataataagccaaggaaccatggctatcagattgctcatggaattttggctgaagtggagggtcaccccttcgacttggacaagatgcttcttatggattggagggattcccatcttgggaatgaaccttacttgcgtactggtaattctaggatccccacttttctgtatgcaatgccatttgattccaacttagtattcttggaagagacttcactggttagtaggccagttttatcttacatggagattaagaaaagaatggtggcgaggctaaggcatttgggcattcgagtgaagaggatattggaggttgagaagtgtttgattccaatgggaggccctcttcctcggatacctcaaagcgttatggcaattggagggacttctgggattgtccacccttcaactggttacatggtggctcggacaatggctctagcaccgatacttgctgaggccattgcagagtgccttggttcgagccgaatgatcagagggaaatcgcttcatcgacgagcgtggaatggtttgtggccaattgagaggagatgtgtaagggaatattactcttttggaatggagactttgttgaagcttgatcttaatgggactagaaggttttttgatgctttctttgacttggatccttattactggcaagggtttctctcttcaaggttgtctcttagagagcttgccttgttgagtttatctctgtttggccatgcctcatttctgtctaggttcgatattgtttcaaagtgtcctgcgcccttggttaaaatgattgggaatctagcactagaaaccatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009687 GO:0009688 GO:0009987 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016853 GO:0016860 GO:0019752 GO:0032787 GO:0034020 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046165 GO:0046394 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Lycopene_cycl Trp_halogenase

Protein Analysis

498

Amino Acids

56.5

Weight (kDa)

9.01

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015577)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25490
malus_domestica	MD03G1148700.v1.1 MD11G1168000.v1.1
prunus_persica	Prupe.6G135000_v2.0.a1
pyrus_communis	pycom03g10310 pycom11g14030
rosa_chinensis	RchiOBHm_Chr5g0046551
rosa_laevigata	RLG00000034417
rosa_multiflora	Rmu_sc0003878.1_g000038
rosa_roxburghii	Rroxscaffold_1G00034850
rosa_rugosa	Rorug05G0229500
rosa_samantha	Rh5AG309800 Rh5BG318200 Rh5CG343900 Rh5DG328500
rosa_wichuraiana	Rw5G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	11
AciI	CCGC	3 cut(s)	29, 35, 41
AclWI	GGATC	5 cut(s)	326, 826, 839, 1319, 1332
AcoI	YGGCCR	3 cut(s)	353, 1214, 1402
AcsI	RAATTY	4 cut(s)	160, 511, 548, 720
AcuI	CTGAAG	2 cut(s)	213, 750
AfaI	GTAC	1 cut(s)	817
AfiI	CCNNNNNNNGG	4 cut(s)	562, 795, 1016, 1088
AflII	CTTAAG	1 cut(s)	506
AgsI	TTSAA	7 cut(s)	175, 404, 628, 1086, 1273, 1356, 1440
AjnI	CCWGG	1 cut(s)	555
AjuI	GAANNNNNNNTTGG	4 cut(s)	860, 892, 968, 1000
AluBI	AGCT	5 cut(s)	393, 400, 636, 1276, 1375
AluI	AGCT	5 cut(s)	393, 400, 636, 1276, 1375
Alw21I	GWGCWC	1 cut(s)	582
Alw26I	GTCTC	4 cut(s)	536, 881, 1256, 1368
AlwI	GGATC	5 cut(s)	326, 826, 839, 1319, 1332
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	8 cut(s)	268, 353, 425, 905, 1018, 1137, 1214, 1402
ApoI	RAATTY	4 cut(s)	160, 511, 548, 720
ArsI	GACNNNNNNTTYG	2 cut(s)	451, 483
AspLEI	GCGC	1 cut(s)	1453
AspS9I	GGNCC	4 cut(s)	223, 269, 472, 1019
AsuC2I	CCSGG	1 cut(s)	217
AsuHPI	GGTGA	4 cut(s)	18, 330, 545, 734
AvaII	GGWCC	2 cut(s)	223, 472
BalI	TGGCCA	3 cut(s)	355, 1216, 1404
BamHI	GGATCC	2 cut(s)	831, 1324
BbsI	GAAGAC	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	582
BbvCI	CCTCAGC	1 cut(s)	1134
BccI	CCATC	4 cut(s)	123, 514, 608, 798
BciT130I	CCWGG	1 cut(s)	557
BciVI	GTATCC	1 cut(s)	1026
BclI	TGATCA	2 cut(s)	252, 1170
BcnI	CCSGG	1 cut(s)	217
BcoDI	GTCTC	4 cut(s)	536, 881, 1256, 1368
BfaI	CTAG	7 cut(s)	231, 828, 1118, 1293, 1422, 1478, 1484
BfrI	CTTAAG	1 cut(s)	506
BfuI	GTATCC	1 cut(s)	1026
BlpI	GCTNAGC	1 cut(s)	291
Bme1390I	CCNGG	2 cut(s)	217, 557
Bme18I	GGWCC	2 cut(s)	223, 472
BmgT120I	GGNCC	4 cut(s)	223, 269, 472, 1019
BmiI	GGNNCC	4 cut(s)	225, 695, 833, 1326
BmrFI	CCNGG	2 cut(s)	217, 557
BmsI	GCATC	5 cut(s)	92, 321, 637, 753, 1297
BpiI	GAAGAC	1 cut(s)	272
BplI	GAGNNNNNCTC	2 cut(s)	1378, 1410
Bpu10I	CCTNAGC	2 cut(s)	953, 1134
Bpu1102I	GCTNAGC	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	106
BpuMI	CCSGG	1 cut(s)	217
BsaBI	GATNNNNATC	2 cut(s)	257, 789
BsaJI	CCNNGG	6 cut(s)	215, 689, 697, 1028, 1153, 1455
BsaXI	ACNNNNNCTCC	2 cut(s)	1253, 1283
Bsc4I	CCNNNNNNNGG	4 cut(s)	562, 795, 1016, 1088
Bse118I	RCCGGY	1 cut(s)	234
Bse1I	ACTGG	7 cut(s)	87, 651, 823, 900, 908, 1093, 1340
Bse3DI	GCAATG	2 cut(s)	858, 1140
Bse8I	GATNNNNATC	2 cut(s)	257, 789
BseBI	CCWGG	1 cut(s)	557
BseDI	CCNNGG	6 cut(s)	215, 689, 697, 1028, 1153, 1455
BseGI	GGATG	1 cut(s)	83
BseJI	GATNNNNATC	2 cut(s)	257, 789
BseLI	CCNNNNNNNGG	4 cut(s)	562, 795, 1016, 1088
BseMI	GCAATG	2 cut(s)	858, 1140
BseMII	CTCAG	2 cut(s)	282, 1125
BseNI	ACTGG	7 cut(s)	87, 651, 823, 900, 908, 1093, 1340
BseRI	GAGGAG	1 cut(s)	1240
BshFI	GGCC	8 cut(s)	270, 355, 427, 907, 1020, 1139, 1216, 1404
BsiHKAI	GWGCWC	1 cut(s)	582
BsiSI	CCGG	2 cut(s)	217, 235
BslFI	GGGAC	2 cut(s)	1075, 1303
BslI	CCNNNNNNNGG	4 cut(s)	562, 795, 1016, 1088
BsmAI	GTCTC	4 cut(s)	536, 881, 1256, 1368
BsmFI	GGGAC	2 cut(s)	1075, 1303
BsmI	GAATGC	1 cut(s)	966
BsnI	GGCC	8 cut(s)	270, 355, 427, 907, 1020, 1139, 1216, 1404
Bsp1286I	GDGCHC	1 cut(s)	582
Bsp143I	GATC	7 cut(s)	208, 252, 331, 831, 1170, 1279, 1324
Bsp1720I	GCTNAGC	1 cut(s)	291
Bsp19I	CCATGG	1 cut(s)	697
BspACI	CCGC	3 cut(s)	29, 35, 41
BspANI	GGCC	8 cut(s)	270, 355, 427, 907, 1020, 1139, 1216, 1404
BspCNI	CTCAG	2 cut(s)	283, 1126
BspLI	GGNNCC	4 cut(s)	225, 695, 833, 1326
BspPI	GGATC	5 cut(s)	326, 826, 839, 1319, 1332
BspTI	CTTAAG	1 cut(s)	506
BsrDI	GCAATG	2 cut(s)	858, 1140
BsrFI	RCCGGY	1 cut(s)	234
BsrI	ACTGG	7 cut(s)	87, 651, 823, 900, 908, 1093, 1340
BssAI	RCCGGY	1 cut(s)	234
BssECI	CCNNGG	6 cut(s)	215, 689, 697, 1028, 1153, 1455
BssMI	GATC	7 cut(s)	208, 252, 331, 831, 1170, 1279, 1324
BssT1I	CCWWGG	4 cut(s)	689, 697, 1153, 1455
Bst2UI	CCWGG	1 cut(s)	557
Bst4CI	ACNGT	2 cut(s)	306, 476
Bst6I	CTCTTC	4 cut(s)	879, 971, 1029, 1357
BstAFI	CTTAAG	1 cut(s)	506
BstC8I	GCNNGC	3 cut(s)	634, 664, 1377
BstDEI	CTNAG	7 cut(s)	291, 412, 637, 871, 953, 1134, 1367
BstDSI	CCRYGG	1 cut(s)	697
BstEII	GGTNACC	1 cut(s)	740
BstF5I	GGATG	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	1453
BstKTI	GATC	7 cut(s)	211, 255, 334, 834, 1173, 1282, 1327
BstMAI	GTCTC	4 cut(s)	536, 881, 1256, 1368
BstMBI	GATC	7 cut(s)	208, 252, 331, 831, 1170, 1279, 1324
BstNI	CCWGG	1 cut(s)	557
BstPI	GGTNACC	1 cut(s)	740
BstSCI	CCNGG	2 cut(s)	215, 555
BstV2I	GAAGAC	1 cut(s)	272
BstX2I	RGATCY	2 cut(s)	831, 1324
BstXI	CCANNNNNNTGG	1 cut(s)	469
BstYI	RGATCY	2 cut(s)	831, 1324
BsuI	GTATCC	1 cut(s)	1026
BsuRI	GGCC	8 cut(s)	270, 355, 427, 907, 1020, 1139, 1216, 1404
BtgI	CCRYGG	1 cut(s)	697
BtsCI	GGATG	1 cut(s)	83
BtsIMutI	CAGTG	2 cut(s)	658, 893
Cac8I	GCNNGC	3 cut(s)	634, 664, 1377
CaiI	CAGNNNCTG	1 cut(s)	272
CfoI	GCGC	1 cut(s)	1453
Cfr10I	RCCGGY	1 cut(s)	234
Cfr13I	GGNCC	4 cut(s)	223, 269, 472, 1019
Csp6I	GTAC	1 cut(s)	816
CviAII	CATG	8 cut(s)	80, 423, 698, 716, 922, 1096, 1406, 1492
CviQI	GTAC	1 cut(s)	816
DdeI	CTNAG	7 cut(s)	291, 412, 637, 871, 953, 1134, 1367
DpnI	GATC	7 cut(s)	210, 254, 333, 833, 1172, 1281, 1326
DpnII	GATC	7 cut(s)	208, 252, 331, 831, 1170, 1279, 1324
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
EaeI	YGGCCR	3 cut(s)	353, 1214, 1402
Eam1104I	CTCTTC	4 cut(s)	879, 971, 1029, 1357
EarI	CTCTTC	4 cut(s)	879, 971, 1029, 1357
Eco130I	CCWWGG	4 cut(s)	689, 697, 1153, 1455
Eco47I	GGWCC	2 cut(s)	223, 472
Eco57I	CTGAAG	2 cut(s)	213, 750
Eco91I	GGTNACC	1 cut(s)	740
EcoO109I	RGGNCCY	2 cut(s)	269, 1019
EcoO65I	GGTNACC	1 cut(s)	740
EcoRII	CCWGG	1 cut(s)	555
EcoT14I	CCWWGG	4 cut(s)	689, 697, 1153, 1455
EcoT22I	ATGCAT	1 cut(s)	85
ErhI	CCWWGG	4 cut(s)	689, 697, 1153, 1455
FaeI	CATG	8 cut(s)	83, 426, 701, 719, 925, 1099, 1409, 1495
FalI	AAGNNNNNCTT	2 cut(s)	620, 652
FaqI	GGGAC	2 cut(s)	1075, 1303
FatI	CATG	8 cut(s)	79, 422, 697, 715, 921, 1095, 1405, 1491
FbaI	TGATCA	2 cut(s)	252, 1170
FokI	GGATG	1 cut(s)	70
FspBI	CTAG	7 cut(s)	231, 828, 1118, 1293, 1422, 1478, 1484
GlaI	GCGC	1 cut(s)	1452
HaeIII	GGCC	8 cut(s)	270, 355, 427, 907, 1020, 1139, 1216, 1404
HapII	CCGG	2 cut(s)	217, 235
HhaI	GCGC	1 cut(s)	1453
Hin1II	CATG	8 cut(s)	83, 426, 701, 719, 925, 1099, 1409, 1495
Hin6I	GCGC	1 cut(s)	1451
HinP1I	GCGC	1 cut(s)	1451
HincII	GTYRAC	1 cut(s)	71
HindII	GTYRAC	1 cut(s)	71
HindIII	AAGCTT	2 cut(s)	634, 1274
HinfI	GANTC	9 cut(s)	141, 182, 489, 543, 593, 785, 863, 1006, 1474
HpaII	CCGG	2 cut(s)	217, 235
HphI	GGTGA	4 cut(s)	18, 330, 545, 734
Hpy166II	GTNNAC	2 cut(s)	71, 1078
Hpy188I	TCNGA	6 cut(s)	17, 247, 708, 1032, 1107, 1175
Hpy188III	TCNNGA	3 cut(s)	123, 138, 167
Hpy8I	GTNNAC	2 cut(s)	71, 1078
Hpy99I	CGWCG	1 cut(s)	1197
HpyAV	CCTTC	6 cut(s)	237, 345, 622, 757, 1092, 1290
HpyCH4III	ACNGT	2 cut(s)	306, 476
HpyCH4V	TGCA	4 cut(s)	83, 662, 851, 1145
HpyF3I	CTNAG	7 cut(s)	291, 412, 637, 871, 953, 1134, 1367
Hsp92II	CATG	8 cut(s)	83, 426, 701, 719, 925, 1099, 1409, 1495
HspAI	GCGC	1 cut(s)	1451
Ksp22I	TGATCA	2 cut(s)	252, 1170
Kzo9I	GATC	7 cut(s)	208, 252, 331, 831, 1170, 1279, 1324
LmnI	GCTCC	1 cut(s)	397
LweI	GCATC	5 cut(s)	92, 321, 637, 753, 1297
MaeI	CTAG	7 cut(s)	231, 828, 1118, 1293, 1422, 1478, 1484
MaeIII	GTNAC	3 cut(s)	300, 740, 1091
MalI	GATC	7 cut(s)	210, 254, 333, 833, 1172, 1281, 1326
MboI	GATC	7 cut(s)	208, 252, 331, 831, 1170, 1279, 1324
MboII	GAAGA	6 cut(s)	272, 511, 896, 988, 1016, 1344
MfeI	CAATTG	2 cut(s)	1053, 1218
MflI	RGATCY	2 cut(s)	831, 1324
MhlI	GDGCHC	1 cut(s)	582
MlsI	TGGCCA	3 cut(s)	355, 1216, 1404
MluCI	AATT	9 cut(s)	160, 511, 548, 573, 667, 720, 823, 1053, 1218
MluNI	TGGCCA	3 cut(s)	355, 1216, 1404
MlyI	GAGTC	5 cut(s)	150, 191, 498, 552, 602
MmeI	TCCRAC	2 cut(s)	201, 891
Mox20I	TGGCCA	3 cut(s)	355, 1216, 1404
Mph1103I	ATGCAT	1 cut(s)	85
MscI	TGGCCA	3 cut(s)	355, 1216, 1404
MseI	TTAA	4 cut(s)	507, 930, 1284, 1461
MslI	CAYNNNNRTG	2 cut(s)	447, 971
Msp20I	TGGCCA	3 cut(s)	355, 1216, 1404
MspCI	CTTAAG	1 cut(s)	506
MspI	CCGG	2 cut(s)	217, 235
MspR9I	CCNGG	2 cut(s)	217, 557
MunI	CAATTG	2 cut(s)	1053, 1218
Mva1269I	GAATGC	1 cut(s)	966
MvaI	CCWGG	1 cut(s)	557
NciI	CCSGG	1 cut(s)	217
NcoI	CCATGG	1 cut(s)	697
NdeII	GATC	7 cut(s)	208, 252, 331, 831, 1170, 1279, 1324
NlaIII	CATG	8 cut(s)	83, 426, 701, 719, 925, 1099, 1409, 1495
NlaIV	GGNNCC	4 cut(s)	225, 695, 833, 1326
NmuCI	GTSAC	2 cut(s)	300, 740
NsiI	ATGCAT	1 cut(s)	85
PctI	GAATGC	1 cut(s)	966
PfeI	GAWTC	4 cut(s)	785, 863, 1006, 1474
PleI	GAGTC	5 cut(s)	149, 190, 497, 551, 601
PpsI	GAGTC	5 cut(s)	149, 190, 497, 551, 601
Psp6I	CCWGG	1 cut(s)	555
PspEI	GGTNACC	1 cut(s)	740
PspGI	CCWGG	1 cut(s)	555
PspN4I	GGNNCC	4 cut(s)	225, 695, 833, 1326
PspPI	GGNCC	4 cut(s)	223, 269, 472, 1019
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	2 cut(s)	831, 1324
RsaI	GTAC	1 cut(s)	817
RsaNI	GTAC	1 cut(s)	816
RseI	CAYNNNNRTG	2 cut(s)	447, 971
SaqAI	TTAA	4 cut(s)	507, 930, 1284, 1461
Sau3AI	GATC	7 cut(s)	208, 252, 331, 831, 1170, 1279, 1324
Sau96I	GGNCC	4 cut(s)	223, 269, 472, 1019
SchI	GAGTC	5 cut(s)	150, 191, 498, 552, 602
ScrFI	CCNGG	2 cut(s)	217, 557
SduI	GDGCHC	1 cut(s)	582
SfaNI	GCATC	5 cut(s)	92, 321, 637, 753, 1297
SinI	GGWCC	2 cut(s)	223, 472
SmiMI	CAYNNNNRTG	2 cut(s)	447, 971
SmlI	CTYRAG	2 cut(s)	121, 506
SmoI	CTYRAG	2 cut(s)	121, 506
Sse9I	AATT	9 cut(s)	160, 511, 548, 573, 667, 720, 823, 1053, 1218
SsiI	CCGC	3 cut(s)	29, 35, 41
SspI	AATATT	1 cut(s)	1244
SspMI	CTAG	7 cut(s)	231, 828, 1118, 1293, 1422, 1478, 1484
StyD4I	CCNGG	2 cut(s)	215, 555
StyI	CCWWGG	4 cut(s)	689, 697, 1153, 1455
TaaI	ACNGT	2 cut(s)	306, 476
TaqI	TCGA	6 cut(s)	487, 750, 970, 1160, 1192, 1428
TaqII	GACCGA	1 cut(s)	231
TasI	AATT	9 cut(s)	160, 511, 548, 573, 667, 720, 823, 1053, 1218
TfiI	GAWTC	4 cut(s)	785, 863, 1006, 1474
Tru1I	TTAA	4 cut(s)	507, 930, 1284, 1461
Tru9I	TTAA	4 cut(s)	507, 930, 1284, 1461
TscAI	CASTG	2 cut(s)	658, 900
TseFI	GTSAC	2 cut(s)	300, 740
Tsp45I	GTSAC	2 cut(s)	300, 740
TspDTI	ATGAA	4 cut(s)	68, 431, 816, 1178
TspRI	CASTG	2 cut(s)	658, 900
Vha464I	CTTAAG	1 cut(s)	506
VpaK11BI	GGWCC	2 cut(s)	223, 472
XapI	RAATTY	4 cut(s)	160, 511, 548, 720
XcmI	CCANNNNNNNNNTGG	2 cut(s)	152, 1085
XspI	CTAG	7 cut(s)	231, 828, 1118, 1293, 1422, 1478, 1484
Zsp2I	ATGCAT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.