Rh5AG309800

Capsanthin capsorubin synthase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
44459716 .. 44461360
1645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG309800.1

Sequence Viewer

Length: 1497 bp
ATGGACACCCTTGTCGGATTGTTTTCACCGCCACCGCCACCACCACCACCACTACCAACCAAGACCAGTCAACTCTTTCATGCATCCAGTCCTCCGTTTTCTTTGCCAAAGCCCCATCACTCAAGAAAGAGATTTTCCAGAGTCCAAAGCAAGTATGGAAATTTTCTGGACTTGAAACCAGAGTCAAAACCTGAAGTGTTAGACTTTGATCTGCCCCGGTTGGACCCTTCTAGCCGGTTTCGGTCAGATGTGATCATCATCGGCACAGGCCCTGCTGGTCTTCGTCTTGCTGAGCAAGTGTCACAGTATGGCATCAAGGTATGTTGTGTTGATCCTTCACCTCTTTCTATGTGGCCAAATAACTATGGTGTTTGGGTTGATGAGTTTGAGAGCTTGGAGCTTGAAAGTTGCTTAGACAAAACATGGCCTTTGGCTTGTGTTCATATTGATGATAATAAGACCAAGTATTTGGACCGTCCTTATGGTCGAGTCAGTAGGAAGAAACTTAAGAATTTGTTGATGGAGAGGTGTCTCTCCAATGGAGTCAAATTTCACCAGGCAAAGGTTTGGAAAATTGAGCACAAAGAGTTTGAGTCTTTGATTTTGTGTGATGATGGGAATGAGTTGAAGGCAAGCTTAGTTGTTGATGCCAGTGGTTTTGCAAGCAATTTCGTAGAGTATAATAAGCCAAGGAACCATGGCTATCAGATTGCTCATGGAATTTTGGCTGAAGTGGAGGGTCACCCCTTCGACTTGGACAAGATGCTTCTTATGGATTGGAGGGATTCCCATCTTGGGAATGAACCTTACTTGCGTACTGGTAATTCTAGGATCCCCACTTTTCTGTATGCAATGCCATTTGATTCCAACTTAGTATTCTTGGAAGAGACTTCACTGGTTAGTAGGCCAGTTTTATCTTACATGGAGATTAAGAAAAGAATGGTGGCGAGGCTAAGGCATTTGGGCATTCGAGTGAAGAGGATATTGGAGGTTGAGAAGTGTTTGATTCCAATGGGAGGCCCTCTTCCTCGGATACCTCAAAGCGTTATGGCAATTGGAGGGACTTCTGGGATTGTCCACCCTTCAACTGGTTACATGGTGGCTCGGACAATGGCTCTAGCACCGATACTTGCTGAGGCCATTGCAGAGTGCCTTGGTTCGAGCCGAATGATCAGAGGGAAATCGCTTCATCAACGAGCGTGGAATGGTTTGTGGCCAATTGAGAGGAGATGTGTAAGGGAATATTACTCTTTTGGAATGGAGACTTTGTTGAAGCTTGATCTTAATGGGACTAGAAGGTTTTTTGATGCTTTCTTTGACTTGGATCCTTATTACTGGCAAGGGTTTCTCTCTTCAAGGTTGTCTCTTAGAGAGCTTGCCTTGTTGAGTTTATCTCTGTTTGGCCATGCCTCATTTCTGTCTAGGTTCGATATTGTTTCAAAGTGTCCTGCGCCCTTGGTTAAAATGATTGGGAATCTAGCACTAGAAACCATGTAA

Protein Analysis

498

Amino Acids

56.46

Weight (kDa)

8.93

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lycopene_cycl PF05834 83 - 475 7.5e-147 Lycopene cyclase protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015577)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 11
AciI CCGC 2 cut(s) 29, 35
AclWI GGATC 5 cut(s) 326, 826, 839, 1319, 1332
AcoI YGGCCR 3 cut(s) 353, 1214, 1402
AcsI RAATTY 4 cut(s) 160, 511, 548, 720
AcuI CTGAAG 2 cut(s) 213, 750
AfaI GTAC 1 cut(s) 817
AfiI CCNNNNNNNGG 4 cut(s) 562, 795, 1016, 1088
AflII CTTAAG 1 cut(s) 506
AgsI TTSAA 7 cut(s) 175, 404, 628, 1086, 1273, 1356, 1440
AjnI CCWGG 1 cut(s) 555
AjuI GAANNNNNNNTTGG 4 cut(s) 860, 892, 968, 1000
AluBI AGCT 5 cut(s) 393, 400, 636, 1276, 1375
AluI AGCT 5 cut(s) 393, 400, 636, 1276, 1375
Alw21I GWGCWC 1 cut(s) 582
Alw26I GTCTC 4 cut(s) 536, 881, 1256, 1368
AlwI GGATC 5 cut(s) 326, 826, 839, 1319, 1332
AlwNI CAGNNNCTG 1 cut(s) 272
AoxI GGCC 8 cut(s) 268, 353, 425, 905, 1018, 1137, 1214, 1402
ApoI RAATTY 4 cut(s) 160, 511, 548, 720
ArsI GACNNNNNNTTYG 2 cut(s) 451, 483
AspLEI GCGC 1 cut(s) 1453
AspS9I GGNCC 4 cut(s) 223, 269, 472, 1019
AsuC2I CCSGG 1 cut(s) 217
AsuHPI GGTGA 4 cut(s) 18, 330, 545, 734
AvaII GGWCC 2 cut(s) 223, 472
BalI TGGCCA 3 cut(s) 355, 1216, 1404
BamHI GGATCC 2 cut(s) 831, 1324
BbsI GAAGAC 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 582
BbvCI CCTCAGC 1 cut(s) 1134
BccI CCATC 4 cut(s) 123, 514, 608, 798
BciT130I CCWGG 1 cut(s) 557
BciVI GTATCC 1 cut(s) 1026
BclI TGATCA 2 cut(s) 252, 1170
BcnI CCSGG 1 cut(s) 217
BcoDI GTCTC 4 cut(s) 536, 881, 1256, 1368
BfaI CTAG 7 cut(s) 231, 828, 1118, 1293, 1422, 1478, 1484
BfrI CTTAAG 1 cut(s) 506
BfuI GTATCC 1 cut(s) 1026
BlpI GCTNAGC 1 cut(s) 291
Bme1390I CCNGG 2 cut(s) 217, 557
Bme18I GGWCC 2 cut(s) 223, 472
BmgT120I GGNCC 4 cut(s) 223, 269, 472, 1019
BmiI GGNNCC 4 cut(s) 225, 695, 833, 1326
BmrFI CCNGG 2 cut(s) 217, 557
BmsI GCATC 5 cut(s) 92, 321, 637, 753, 1297
BpiI GAAGAC 1 cut(s) 272
BplI GAGNNNNNCTC 2 cut(s) 1378, 1410
Bpu10I CCTNAGC 2 cut(s) 953, 1134
Bpu1102I GCTNAGC 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 217
BsaBI GATNNNNATC 2 cut(s) 257, 789
BsaJI CCNNGG 6 cut(s) 215, 689, 697, 1028, 1153, 1455
BsaXI ACNNNNNCTCC 2 cut(s) 1253, 1283
Bsc4I CCNNNNNNNGG 4 cut(s) 562, 795, 1016, 1088
Bse118I RCCGGY 1 cut(s) 234
Bse1I ACTGG 8 cut(s) 66, 87, 651, 823, 900, 908, 1093, 1340
Bse3DI GCAATG 2 cut(s) 858, 1140
Bse8I GATNNNNATC 2 cut(s) 257, 789
BseBI CCWGG 1 cut(s) 557
BseDI CCNNGG 6 cut(s) 215, 689, 697, 1028, 1153, 1455
BseGI GGATG 1 cut(s) 83
BseJI GATNNNNATC 2 cut(s) 257, 789
BseLI CCNNNNNNNGG 4 cut(s) 562, 795, 1016, 1088
BseMI GCAATG 2 cut(s) 858, 1140
BseMII CTCAG 2 cut(s) 282, 1125
BseNI ACTGG 8 cut(s) 66, 87, 651, 823, 900, 908, 1093, 1340
BseRI GAGGAG 1 cut(s) 1240
BshFI GGCC 8 cut(s) 270, 355, 427, 907, 1020, 1139, 1216, 1404
BsiHKAI GWGCWC 1 cut(s) 582
BsiSI CCGG 2 cut(s) 217, 235
BslFI GGGAC 2 cut(s) 1075, 1303
BslI CCNNNNNNNGG 4 cut(s) 562, 795, 1016, 1088
BsmAI GTCTC 4 cut(s) 536, 881, 1256, 1368
BsmFI GGGAC 2 cut(s) 1075, 1303
BsmI GAATGC 1 cut(s) 966
BsnI GGCC 8 cut(s) 270, 355, 427, 907, 1020, 1139, 1216, 1404
Bsp1286I GDGCHC 1 cut(s) 582
Bsp143I GATC 7 cut(s) 208, 252, 331, 831, 1170, 1279, 1324
Bsp1720I GCTNAGC 1 cut(s) 291
Bsp19I CCATGG 1 cut(s) 697
BspACI CCGC 2 cut(s) 29, 35
BspANI GGCC 8 cut(s) 270, 355, 427, 907, 1020, 1139, 1216, 1404
BspCNI CTCAG 2 cut(s) 283, 1126
BspLI GGNNCC 4 cut(s) 225, 695, 833, 1326
BspPI GGATC 5 cut(s) 326, 826, 839, 1319, 1332
BspTI CTTAAG 1 cut(s) 506
BsrDI GCAATG 2 cut(s) 858, 1140
BsrFI RCCGGY 1 cut(s) 234
BsrI ACTGG 8 cut(s) 66, 87, 651, 823, 900, 908, 1093, 1340
BssAI RCCGGY 1 cut(s) 234
BssECI CCNNGG 6 cut(s) 215, 689, 697, 1028, 1153, 1455
BssMI GATC 7 cut(s) 208, 252, 331, 831, 1170, 1279, 1324
BssT1I CCWWGG 4 cut(s) 689, 697, 1153, 1455
Bst2UI CCWGG 1 cut(s) 557
Bst4CI ACNGT 2 cut(s) 306, 476
Bst6I CTCTTC 4 cut(s) 879, 971, 1029, 1357
BstAFI CTTAAG 1 cut(s) 506
BstC8I GCNNGC 3 cut(s) 634, 664, 1377
BstDEI CTNAG 7 cut(s) 291, 412, 637, 871, 953, 1134, 1367
BstDSI CCRYGG 1 cut(s) 697
BstEII GGTNACC 1 cut(s) 740
BstF5I GGATG 1 cut(s) 83
BstHHI GCGC 1 cut(s) 1453
BstKTI GATC 7 cut(s) 211, 255, 334, 834, 1173, 1282, 1327
BstMAI GTCTC 4 cut(s) 536, 881, 1256, 1368
BstMBI GATC 7 cut(s) 208, 252, 331, 831, 1170, 1279, 1324
BstNI CCWGG 1 cut(s) 557
BstPI GGTNACC 1 cut(s) 740
BstSCI CCNGG 2 cut(s) 215, 555
BstV2I GAAGAC 1 cut(s) 272
BstX2I RGATCY 2 cut(s) 831, 1324
BstXI CCANNNNNNTGG 1 cut(s) 469
BstYI RGATCY 2 cut(s) 831, 1324
BsuI GTATCC 1 cut(s) 1026
BsuRI GGCC 8 cut(s) 270, 355, 427, 907, 1020, 1139, 1216, 1404
BtgI CCRYGG 1 cut(s) 697
BtsCI GGATG 1 cut(s) 83
BtsIMutI CAGTG 2 cut(s) 658, 893
Cac8I GCNNGC 3 cut(s) 634, 664, 1377
CaiI CAGNNNCTG 1 cut(s) 272
CfoI GCGC 1 cut(s) 1453
Cfr10I RCCGGY 1 cut(s) 234
Cfr13I GGNCC 4 cut(s) 223, 269, 472, 1019
Csp6I GTAC 1 cut(s) 816
CspCI CAANNNNNGTGG 2 cut(s) 1181, 1216
CviAII CATG 8 cut(s) 80, 423, 698, 716, 922, 1096, 1406, 1492
CviQI GTAC 1 cut(s) 816
DdeI CTNAG 7 cut(s) 291, 412, 637, 871, 953, 1134, 1367
DpnI GATC 7 cut(s) 210, 254, 333, 833, 1172, 1281, 1326
DpnII GATC 7 cut(s) 208, 252, 331, 831, 1170, 1279, 1324
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
EaeI YGGCCR 3 cut(s) 353, 1214, 1402
Eam1104I CTCTTC 4 cut(s) 879, 971, 1029, 1357
EarI CTCTTC 4 cut(s) 879, 971, 1029, 1357
Eco130I CCWWGG 4 cut(s) 689, 697, 1153, 1455
Eco47I GGWCC 2 cut(s) 223, 472
Eco57I CTGAAG 2 cut(s) 213, 750
Eco91I GGTNACC 1 cut(s) 740
EcoO109I RGGNCCY 2 cut(s) 269, 1019
EcoO65I GGTNACC 1 cut(s) 740
EcoRII CCWGG 1 cut(s) 555
EcoT14I CCWWGG 4 cut(s) 689, 697, 1153, 1455
EcoT22I ATGCAT 1 cut(s) 85
ErhI CCWWGG 4 cut(s) 689, 697, 1153, 1455
FaeI CATG 8 cut(s) 83, 426, 701, 719, 925, 1099, 1409, 1495
FalI AAGNNNNNCTT 2 cut(s) 620, 652
FaqI GGGAC 2 cut(s) 1075, 1303
FatI CATG 8 cut(s) 79, 422, 697, 715, 921, 1095, 1405, 1491
FbaI TGATCA 2 cut(s) 252, 1170
FokI GGATG 1 cut(s) 70
FspBI CTAG 7 cut(s) 231, 828, 1118, 1293, 1422, 1478, 1484
GlaI GCGC 1 cut(s) 1452
HaeIII GGCC 8 cut(s) 270, 355, 427, 907, 1020, 1139, 1216, 1404
HapII CCGG 2 cut(s) 217, 235
HhaI GCGC 1 cut(s) 1453
Hin1II CATG 8 cut(s) 83, 426, 701, 719, 925, 1099, 1409, 1495
Hin6I GCGC 1 cut(s) 1451
HinP1I GCGC 1 cut(s) 1451
HincII GTYRAC 1 cut(s) 71
HindII GTYRAC 1 cut(s) 71
HindIII AAGCTT 2 cut(s) 634, 1274
HinfI GANTC 9 cut(s) 141, 182, 489, 543, 593, 785, 863, 1006, 1474
HpaII CCGG 2 cut(s) 217, 235
HphI GGTGA 4 cut(s) 18, 330, 545, 734
Hpy166II GTNNAC 2 cut(s) 71, 1078
Hpy188I TCNGA 6 cut(s) 17, 247, 708, 1032, 1107, 1175
Hpy188III TCNNGA 3 cut(s) 123, 138, 167
Hpy8I GTNNAC 2 cut(s) 71, 1078
HpyAV CCTTC 6 cut(s) 237, 345, 622, 757, 1092, 1290
HpyCH4III ACNGT 2 cut(s) 306, 476
HpyCH4V TGCA 4 cut(s) 83, 662, 851, 1145
HpyF3I CTNAG 7 cut(s) 291, 412, 637, 871, 953, 1134, 1367
Hsp92II CATG 8 cut(s) 83, 426, 701, 719, 925, 1099, 1409, 1495
HspAI GCGC 1 cut(s) 1451
Ksp22I TGATCA 2 cut(s) 252, 1170
Kzo9I GATC 7 cut(s) 208, 252, 331, 831, 1170, 1279, 1324
LmnI GCTCC 1 cut(s) 397
LweI GCATC 5 cut(s) 92, 321, 637, 753, 1297
MaeI CTAG 7 cut(s) 231, 828, 1118, 1293, 1422, 1478, 1484
MaeIII GTNAC 3 cut(s) 300, 740, 1091
MalI GATC 7 cut(s) 210, 254, 333, 833, 1172, 1281, 1326
MboI GATC 7 cut(s) 208, 252, 331, 831, 1170, 1279, 1324
MboII GAAGA 6 cut(s) 272, 511, 896, 988, 1016, 1344
MfeI CAATTG 2 cut(s) 1053, 1218
MflI RGATCY 2 cut(s) 831, 1324
MhlI GDGCHC 1 cut(s) 582
MlsI TGGCCA 3 cut(s) 355, 1216, 1404
MluCI AATT 9 cut(s) 160, 511, 548, 573, 667, 720, 823, 1053, 1218
MluNI TGGCCA 3 cut(s) 355, 1216, 1404
MlyI GAGTC 5 cut(s) 150, 191, 498, 552, 602
MmeI TCCRAC 2 cut(s) 201, 891
Mox20I TGGCCA 3 cut(s) 355, 1216, 1404
Mph1103I ATGCAT 1 cut(s) 85
MscI TGGCCA 3 cut(s) 355, 1216, 1404
MseI TTAA 4 cut(s) 507, 930, 1284, 1461
MslI CAYNNNNRTG 2 cut(s) 447, 971
Msp20I TGGCCA 3 cut(s) 355, 1216, 1404
MspCI CTTAAG 1 cut(s) 506
MspI CCGG 2 cut(s) 217, 235
MspR9I CCNGG 2 cut(s) 217, 557
MunI CAATTG 2 cut(s) 1053, 1218
Mva1269I GAATGC 1 cut(s) 966
MvaI CCWGG 1 cut(s) 557
NciI CCSGG 1 cut(s) 217
NcoI CCATGG 1 cut(s) 697
NdeII GATC 7 cut(s) 208, 252, 331, 831, 1170, 1279, 1324
NlaIII CATG 8 cut(s) 83, 426, 701, 719, 925, 1099, 1409, 1495
NlaIV GGNNCC 4 cut(s) 225, 695, 833, 1326
NmuCI GTSAC 2 cut(s) 300, 740
NsiI ATGCAT 1 cut(s) 85
PctI GAATGC 1 cut(s) 966
PfeI GAWTC 4 cut(s) 785, 863, 1006, 1474
PleI GAGTC 5 cut(s) 149, 190, 497, 551, 601
PpsI GAGTC 5 cut(s) 149, 190, 497, 551, 601
Psp6I CCWGG 1 cut(s) 555
PspEI GGTNACC 1 cut(s) 740
PspGI CCWGG 1 cut(s) 555
PspN4I GGNNCC 4 cut(s) 225, 695, 833, 1326
PspPI GGNCC 4 cut(s) 223, 269, 472, 1019
PstNI CAGNNNCTG 1 cut(s) 272
PsuI RGATCY 2 cut(s) 831, 1324
RsaI GTAC 1 cut(s) 817
RsaNI GTAC 1 cut(s) 816
RseI CAYNNNNRTG 2 cut(s) 447, 971
SaqAI TTAA 4 cut(s) 507, 930, 1284, 1461
Sau3AI GATC 7 cut(s) 208, 252, 331, 831, 1170, 1279, 1324
Sau96I GGNCC 4 cut(s) 223, 269, 472, 1019
SchI GAGTC 5 cut(s) 150, 191, 498, 552, 602
ScrFI CCNGG 2 cut(s) 217, 557
SduI GDGCHC 1 cut(s) 582
SfaNI GCATC 5 cut(s) 92, 321, 637, 753, 1297
SinI GGWCC 2 cut(s) 223, 472
SmiMI CAYNNNNRTG 2 cut(s) 447, 971
SmlI CTYRAG 2 cut(s) 121, 506
SmoI CTYRAG 2 cut(s) 121, 506
Sse9I AATT 9 cut(s) 160, 511, 548, 573, 667, 720, 823, 1053, 1218
SsiI CCGC 2 cut(s) 29, 35
SspI AATATT 1 cut(s) 1244
SspMI CTAG 7 cut(s) 231, 828, 1118, 1293, 1422, 1478, 1484
StyD4I CCNGG 2 cut(s) 215, 555
StyI CCWWGG 4 cut(s) 689, 697, 1153, 1455
TaaI ACNGT 2 cut(s) 306, 476
TaqI TCGA 5 cut(s) 487, 750, 970, 1160, 1428
TaqII GACCGA 1 cut(s) 231
TasI AATT 9 cut(s) 160, 511, 548, 573, 667, 720, 823, 1053, 1218
TfiI GAWTC 4 cut(s) 785, 863, 1006, 1474
Tru1I TTAA 4 cut(s) 507, 930, 1284, 1461
Tru9I TTAA 4 cut(s) 507, 930, 1284, 1461
TscAI CASTG 2 cut(s) 658, 900
TseFI GTSAC 2 cut(s) 300, 740
Tsp45I GTSAC 2 cut(s) 300, 740
TspDTI ATGAA 4 cut(s) 68, 431, 816, 1178
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 2 cut(s) 658, 900
Vha464I CTTAAG 1 cut(s) 506
VpaK11BI GGWCC 2 cut(s) 223, 472
XapI RAATTY 4 cut(s) 160, 511, 548, 720
XcmI CCANNNNNNNNNTGG 2 cut(s) 152, 1085
XspI CTAG 7 cut(s) 231, 828, 1118, 1293, 1422, 1478, 1484
Zsp2I ATGCAT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.