Rorug05G0229500
NAC Family

Capsanthin capsorubin synthase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
23848796 .. 23858749
9954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0229500.1

Sequence Viewer

Length: 2061 bp
ATGGATGATGCAGCTGGTTTGATAGAAGCTGCAGGATCAAGGTTTAGTTCATTGGAGCTAATTGGACGGGGATCGTTTGGTGATGTATATAAAGGGTTTGATAGGGATCTTAACAAAGAAGTTGCAATCAAAGTAATTGATTTGGAAGAGTCAGAGGATGAAATTGAGGACATTCAAAAGGAAATTTCTGTTTTGTCACAATGTCGATCTCCTTATATTACAGAGTATTATGGTTCCTATCTCAACCAGACAAAACTATGGATAATAATGGAATACATGGCTGGTGGCTCTGTTGCTGATCTACTCCAGTCTGGTCCGCCACTGGATGAAATGTCAATGGCTTGCATTCTTCGTGACTTGTTGCATGCAATTGAATATTTACATAATGAAGGAAAAATTCACAGAGATATTAAAGCGGCAAACATTTTATTGACAGAAAATGGTGATGTTAAGGTGGCAGACTTTGGTGTTTCCGCACAACTCACAAGGACAATATCAAGGAGGAAGACATTTGTAGGAACACCATTCTGGATGGCTCCAGAAGTTATTCAAAATTCTGAAGGATACAATGAGAAGGCAGATATCTGGTCTCTCGGAATTACTGCTATTGAGATGGCGAAAGGGGAGCCGCCACTTGCCGATCTTCACCCAATGAGAGTTCTTTTCATTATACCTCGAGAAAATCCACCTCAGTTGGATGAGCATTTTTCTCGACCTATGAAAGAATTTGTTTCACTATGTTTGAAGAAGGTACCTGCTGAGCGTGCAAGTGCCAAGGAACTGCTAAAGCACCGCTTTATTAGGACTGCTAGGAAGAGTCCAAGACTTCTTGAGAGAATAAGGGAACGTCCCAAGTACCCGATAAAGGAAGATGATGACACCACTAGAAATGGTCCTACGGCTAGAGGGGAGACGTCTGATACCGTGAAGGTGACAAGAAATATAAGAGATGAAACAGTTCGAGCTAGTGAACAGGGTAAGACCATGAAAAATGCTGGATGGGATTTCAGCATTGGATCACAGGGTACAGGGACTATTAGAAGTGTAGCAGCCGTAAAACCACCTCAGGCAAGAGAAAGAAAGCCAGAAGGCCGGTATAATCAGGTTACACCTGAAAGGCTCCCCGAGAATAGTAACCGACATTTGTCACCTGGGAGTGCACAACATGATTCACATGAAGATGAAGATGAAGATTTGACTGTAAGTGGGTCTGGAACTGTTGTTATACGAACACCCAAAGGATCTCAGTCATCTTCCCAGTTTCGTGATCAAAACTCTCTGACCAGCAGCACATATGCTTCTTATGAAGATGCTTCTTCCAGTGGAACTGTTGTTTTTCGTGGCCAGCTTGATGATTCTGATTCTCCTCGAACGCCAAGATCGAGGCTGGGAATTCAAGAGAGAACTTCAAGTTCTTCAATTGAAGACAGTGCCATGAATCTTGCAGAGGCAAAGGCAGCAATTCAAGGGAGGAAAGGAAATGCTAGAGAAAAGTCTGGGCTGACGAAGGTCAACTATGATTCGCAAGATAGCAGAATAGGGCGGATGACAAATAGCTCTGATTCTACCAGACAATCTGATGACTACTTTGACGCACCAAAAGCATCTTCAAGATCATCTCAAGCAAGTGATGATGAAGAAAGTGAAAAAGTAATGTCATCATCTGCAGCATTATCAATGCTGCTCATCCCTTCCCTGAAAGAGGCGGTTGCTGATGAGTTAGAAGGGTCAGAAGTGCGGTCGGTTGCAAGGTCGCTGGTGAATTTGGAGAGCTTGAAACCTGGAGCGTGTGAAGTTTTTGTCAGCAAATTGCTTCAGCGATTAGCAAGTTCAAATAGTTCCAAGGAATCTTCCTTGAAAGATCTACAGGAGCTGGCGGCTCGCATCTTCTCTAAGGGTAAGACAACTTCTGGAGAAACGCAACACACAAATACAGAAGCTGATAGCAAGAAAAGGCAGCAAAACAAGGAGTTTCAGTCAAATGCAAATATAAGCCCACTTGCAAGATTTTTGCTCTCGAGATGGCAAGGGCAAGTTTCACGCGATCTAAGTCCAGCGTGA

Protein Analysis

686

Amino Acids

75.89

Weight (kDa)

5.81

Isoelectric Point (pI)

53.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 16 - 267 2e-69 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 19 - 263 6.1e-52 Protein tyrosine and serine/threonine kinase
ABC1 PF03109 56 - 165 8.5e-06 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53610 AT1G53620
fragaria_vesca FvH4_3g16890 FvH4_3g16900 FvH4_3g16910 FvH4_3g17012 FvH4_3g18170 FvH4_3g18460 FvH4_3g18930 FvH4_3g18940 FvH4_3g25560 FvH4_4g12410 FvH4_5g05980 FvH4_5g24860 FvH4_5g25360 FvH4_5g25510 FvH4_5g27470 FvH4_5g27620 FvH4_5g27760 FvH4_5g29460 FvH4_6g04191 FvH4_6g39190 FvH4_6g39200 FvH4_6g39580 FvH4_6g39600 FvH4_7g11470
malus_domestica MD00G1154700.v1.1 MD00G1154800.v1.1 MD00G1155000.v1.1 MD03G1255000.v1.1 MD03G1255100.v1.1 MD03G1255200.v1.1 MD03G1255300.v1.1 MD06G1030300.v1.1 MD11G1219300.v1.1 MD11G1264900.v1.1
prunus_persica Prupe.1G575600_v2.0.a1 Prupe.3G065000_v2.0.a1 Prupe.3G111400_v2.0.a1 Prupe.4G151300_v2.0.a1 Prupe.4G151900_v2.0.a1 Prupe.4G153700_v2.0.a1 Prupe.4G154000_v2.0.a1 Prupe.4G230600_v2.0.a1 Prupe.4G230900_v2.0.a1 Prupe.4G231000_v2.0.a1 Prupe.4G246100_v2.0.a1 Prupe.4G255500_v2.0.a1 Prupe.6G133600_v2.0.a1 Prupe.6G134000_v2.0.a1 Prupe.I005300_v2.0.a1
pyrus_communis pycom03g14030 pycom03g15340
rosa_chinensis RchiOBHm_Chr3g0452871 RchiOBHm_Chr5g0056721 RchiOBHm_Chr6g0271921 RchiOBHm_Chr7g0211251 RchiOBHm_Chr7g0231191
rosa_laevigata RLG00000000989 RLG00000001070 RLG00000001076 RLG00000001103 RLG00000001116 RLG00000001118 RLG00000001936 RLG00000001949 RLG00000002610 RLG00000002710 RLG00000003013 RLG00000013562 RLG00000013567 RLG00000018805 RLG00000020667 RLG00000020716 RLG00000020717 RLG00000025564 RLG00000028522 RLG00000030016 RLG00000033070 RLG00000033077 RLG00000033081 RLG00000033086 RLG00000033235 RLG00000033291 RLG00000033337 RLG00000033338 RLG00000033340 RLG00000033345 RLG00000033346 RLG00000033874 RLG00000033885 RLG00000034356 RLG00000034411 RLG00000034414
rosa_multiflora Rmu_co8273153.1_g000001 Rmu_co8288493.1_g000001 Rmu_co8293081.1_g000001 Rmu_co8429197.1_g000001 Rmu_sc0000055.1_g000007 Rmu_sc0000218.1_g000011 Rmu_sc0000533.1_g000061 Rmu_sc0000755.1_g000007 Rmu_sc0000758.1_g000005 Rmu_sc0000898.1_g000011 Rmu_sc0000898.1_g000025 Rmu_sc0001561.1_g000008 Rmu_sc0001571.1_g000004 Rmu_sc0002292.1_g000005 Rmu_sc0002292.1_g000006 Rmu_sc0002308.1_g000010 Rmu_sc0002449.1_g000010 Rmu_sc0002449.1_g000011 Rmu_sc0002536.1_g000004 Rmu_sc0002536.1_g000005 Rmu_sc0002536.1_g000015 Rmu_sc0003238.1_g000014 Rmu_sc0003545.1_g000015 Rmu_sc0003720.1_g000009 Rmu_sc0003878.1_g000040 Rmu_sc0003878.1_g000041 Rmu_sc0003878.1_g000047 Rmu_sc0003878.1_g000048 Rmu_sc0003972.1_g000001 Rmu_sc0004322.1_g000008 Rmu_sc0004379.1_g000014 Rmu_sc0005478.1_g000002 Rmu_sc0006240.1_g000008 Rmu_sc0006847.1_g000022 Rmu_sc0007753.1_g000022 Rmu_sc0007782.1_g000001 Rmu_sc0008328.1_g000002 Rmu_sc0008526.1_g000005 Rmu_sc0008835.1_g000013 Rmu_sc0014005.1_g000009 Rmu_sc0014478.1_g000004 Rmu_sc0015060.1_g000021 Rmu_sc0016364.1_g000001 Rmu_sc0016727.1_g000004 Rmu_sc0020600.1_g000008 Rmu_sc0022743.1_g000003 Rmu_sc0032116.1_g000002 Rmu_sc0033519.1_g000005 Rmu_sc0042823.1_g000001 Rmu_ssc0000134.1_g000011
rosa_roxburghii Rroxscaffold_1G00029360 Rroxscaffold_1G00034880 Rroxscaffold_1G00034930 Rroxscaffold_1G00034970 Rroxscaffold_1G00042100 Rroxscaffold_1G00049130 Rroxscaffold_1G00049660 Rroxscaffold_1G00051410 Rroxscaffold_2G00094840 Rroxscaffold_2G00094850 Rroxscaffold_2G00095300 Rroxscaffold_3G00224990 Rroxscaffold_3G00225050 Rroxscaffold_3G00225080 Rroxscaffold_3G00225360 Rroxscaffold_3G00235370 Rroxscaffold_3G00243820 Rroxscaffold_3G00243860 Rroxscaffold_3G00243920 Rroxscaffold_3G00244920 Rroxscaffold_4G00305330 Rroxscaffold_5G00373100 Rroxscaffold_6G00407840 Rroxscaffold_6G00422000 Rroxscaffold_6G00429880 Rroxscaffold_7G00186180
rosa_rugosa Rorug01G0120600 Rorug01G0127200 Rorug01G0128500 Rorug01G0206000 Rorug02G0251400 Rorug02G0420800 Rorug02G0436800 Rorug02G0441000 Rorug02G0643100 Rorug03G0339200 Rorug04G0168000 Rorug04G0168100 Rorug05G0104500 Rorug05G0105300 Rorug05G0105700 Rorug05G0105800 Rorug05G0118900 Rorug05G0175700 Rorug05G0228200 Rorug05G0229000 Rorug05G0229500 Rorug06G0064300 Rorug07G0124700 Rorug07G0156100 Rorug07G0156700 Rorug07G0158100 Rorug07G0219600 Rorug07G0273400 Rorug07G0291800 Rorug07G0294300 Rorug07G0297400 Rorug07G0297800
rosa_samantha Rh1BG189400 Rh1CG103600 Rh1CG142100 Rh1CG208100 Rh1DG209200 Rh2CG296600 Rh2CG301600 Rh2CG485100 Rh2CG489800 Rh2CG490000 Rh2DG333700 Rh2DG526600 Rh2DG526800 Rh3BG048500 Rh3CG047100 Rh3DG048100 Rh5AG198800 Rh5AG211300 Rh5AG213900 Rh5AG217700 Rh5AG221800 Rh5AG225800 Rh5AG262500 Rh5AG309600 Rh5BG210200 Rh5CG216300 Rh5CG217100 Rh5CG217500 Rh5CG233900 Rh5CG236800 Rh5CG239600 Rh5CG241200 Rh5CG244900 Rh5CG245100 Rh5CG254600 Rh5CG299700 Rh5CG343400 Rh5CG343600 Rh5CG406800 Rh5DG215100 Rh5DG215200 Rh5DG220900 Rh5DG222800 Rh5DG226600 Rh5DG226700 Rh5DG226800 Rh5DG231600 Rh5DG273600 Rh5DG327700 Rh5DG328300 Rh6BG185200 Rh6DG174700 Rh7AG257100 Rh7AG285100 Rh7AG293000 Rh7AG294700 Rh7AG296700 Rh7AG297200 Rh7AG298400 Rh7AG306700 Rh7AG362600 Rh7AG379100 Rh7AG449400 Rh7AG451800 Rh7AG453400 Rh7AG453500 Rh7AG459000 Rh7BG251000 Rh7BG275900 Rh7BG276100 Rh7BG276800 Rh7BG285400 Rh7BG353800 Rh7BG400900 Rh7BG418600 Rh7BG421100 Rh7BG424000 Rh7BG424300 Rh7BG424400 Rh7DG288700
rosa_wichuraiana Rw0G000390 Rw0G010750 Rw0G015930 Rw0G020680 Rw0G023760 Rw1G008930 Rw1G012360 Rw1G019040 Rw2G025060 Rw2G041400 Rw2G041420 Rw3G003610 Rw5G018050 Rw5G018130 Rw5G019340 Rw5G019550 Rw5G020700 Rw5G024510 Rw5G036060 Rw6G015630 Rw7G021960 Rw7G024340 Rw7G024900 Rw7G024940 Rw7G025030 Rw7G025280 Rw7G030800 Rw7G032090 Rw7G037610 Rw7G038010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 917
Acc36I ACCTGC 1 cut(s) 763
Acc65I GGTACC 1 cut(s) 751
AccB1I GGYRCC 1 cut(s) 751
AccII CGCG 1 cut(s) 2043
AciI CCGC 9 cut(s) 317, 416, 474, 629, 793, 1543, 1706, 1738, 1877
AclWI GGATC 5 cut(s) 43, 79, 114, 1024, 1249
AcoI YGGCCR 1 cut(s) 1342
AcsI RAATTY 6 cut(s) 183, 396, 553, 725, 1392, 1762
AcuI CTGAAG 2 cut(s) 579, 1799
AcyI GRCGYC 1 cut(s) 914
AfaI GTAC 3 cut(s) 753, 857, 1027
AfiI CCNNNNNNNGG 2 cut(s) 865, 1702
AjnI CCWGG 2 cut(s) 1150, 1780
AjuI GAANNNNNNNTTGG 2 cut(s) 1591, 1623
AluBI AGCT 9 cut(s) 14, 29, 58, 965, 1348, 1557, 1773, 1873, 1940
AluI AGCT 9 cut(s) 14, 29, 58, 965, 1348, 1557, 1773, 1873, 1940
Alw21I GWGCWC 1 cut(s) 1162
Alw26I GTCTC 2 cut(s) 594, 905
Alw44I GTGCAC 1 cut(s) 1158
AlwI GGATC 5 cut(s) 43, 79, 114, 1024, 1249
AlwNI CAGNNNCTG 2 cut(s) 1873, 1940
Ama87I CYCGRG 3 cut(s) 675, 1124, 2017
AoxI GGCC 2 cut(s) 1090, 1342
ApaLI GTGCAC 1 cut(s) 1158
ApeKI GCWGC 8 cut(s) 11, 29, 1049, 1287, 1457, 1667, 1681, 1957
ApoI RAATTY 6 cut(s) 183, 396, 553, 725, 1392, 1762
Asp700I GAANNNNTTC 2 cut(s) 546, 957
Asp718I GGTACC 1 cut(s) 751
AspS9I GGNCC 2 cut(s) 314, 893
AsuHPI GGTGA 6 cut(s) 92, 455, 638, 943, 1140, 1771
AvaI CYCGRG 3 cut(s) 675, 1124, 2017
AvaII GGWCC 2 cut(s) 314, 893
AxyI CCTNAGG 1 cut(s) 1065
BaeGI GKGCMC 1 cut(s) 1162
BalI TGGCCA 1 cut(s) 1344
BanI GGYRCC 1 cut(s) 751
BarI GAAGNNNNNNTAC 2 cut(s) 1891, 1923
BbsI GAAGAC 2 cut(s) 512, 1431
Bbv12I GWGCWC 1 cut(s) 1162
BbvI GCAGC 8 cut(s) 16, 23, 1061, 1299, 1469, 1668, 1679, 1969
BccI CCATC 4 cut(s) 526, 607, 993, 2016
BceAI ACGGC 2 cut(s) 915, 1037
BcgI CGANNNNNNTGC 2 cut(s) 692, 726
BciT130I CCWGG 2 cut(s) 1152, 1782
BciVI GTATCC 1 cut(s) 557
BclI TGATCA 1 cut(s) 1267
BcoDI GTCTC 2 cut(s) 594, 905
BfaI CTAG 5 cut(s) 810, 885, 903, 966, 1485
BfmI CTRYAG 3 cut(s) 30, 1665, 1865
BfuAI ACCTGC 1 cut(s) 763
BfuI GTATCC 1 cut(s) 557
BglII AGATCT 1 cut(s) 1861
BlpI GCTNAGC 1 cut(s) 759
Bme1390I CCNGG 2 cut(s) 1152, 1782
Bme18I GGWCC 2 cut(s) 314, 893
BmeT110I CYCGRG 3 cut(s) 675, 1124, 2017
BmgT120I GGNCC 2 cut(s) 314, 893
BmiI GGNNCC 5 cut(s) 235, 537, 627, 753, 1121
BmrFI CCNGG 2 cut(s) 1152, 1782
BmrI ACTGGG 1 cut(s) 1252
BmsI GCATC 3 cut(s) 1300, 1613, 1893
BmuI ACTGGG 1 cut(s) 1252
BoxI GACNNNNGTC 2 cut(s) 1144, 1508
BpiI GAAGAC 2 cut(s) 512, 1431
BpmI CTGGAG 4 cut(s) 290, 522, 1803, 1932
Bpu1102I GCTNAGC 1 cut(s) 759
BpuEI CTTGAG 2 cut(s) 851, 1605
BsaBI GATNNNNATC 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 914
BsaI GGTCTC 1 cut(s) 594
BsaJI CCNNGG 3 cut(s) 774, 1151, 1842
BsaXI ACNNNNNCTCC 2 cut(s) 1961, 1991
Bsc4I CCNNNNNNNGG 2 cut(s) 865, 1702
Bse118I RCCGGY 1 cut(s) 1092
Bse1I ACTGG 4 cut(s) 307, 327, 1258, 1320
Bse21I CCTNAGG 1 cut(s) 1065
Bse8I GATNNNNATC 1 cut(s) 105
BseBI CCWGG 2 cut(s) 1152, 1782
BseDI CCNNGG 3 cut(s) 774, 1151, 1842
BseGI GGATG 8 cut(s) 10, 163, 331, 537, 703, 1004, 1551, 1686
BseJI GATNNNNATC 1 cut(s) 105
BseLI CCNNNNNNNGG 2 cut(s) 865, 1702
BseMII CTCAG 4 cut(s) 704, 750, 1079, 1259
BseNI ACTGG 4 cut(s) 307, 327, 1258, 1320
BseRI GAGGAG 1 cut(s) 1356
BseSI GKGCMC 1 cut(s) 1162
BseXI GCAGC 8 cut(s) 16, 23, 1061, 1299, 1469, 1668, 1679, 1969
BseYI CCCAGC 1 cut(s) 1387
Bsh1236I CGCG 1 cut(s) 2043
Bsh1285I CGRYCG 1 cut(s) 1742
BshFI GGCC 2 cut(s) 1092, 1344
BshNI GGYRCC 1 cut(s) 751
BsiEI CGRYCG 1 cut(s) 1742
BsiHKAI GWGCWC 1 cut(s) 1162
BsiHKCI CYCGRG 3 cut(s) 675, 1124, 2017
BsiSI CCGG 1 cut(s) 1093
BslFI GGGAC 2 cut(s) 834, 1045
BslI CCNNNNNNNGG 2 cut(s) 865, 1702
BsmAI GTCTC 2 cut(s) 594, 905
BsmBI CGTCTC 1 cut(s) 905
BsmFI GGGAC 2 cut(s) 834, 1045
BsmI GAATGC 1 cut(s) 345
BsnI GGCC 2 cut(s) 1092, 1344
Bso31I GGTCTC 1 cut(s) 594
BsoBI CYCGRG 3 cut(s) 675, 1124, 2017
Bsp1286I GDGCHC 1 cut(s) 1162
Bsp1720I GCTNAGC 1 cut(s) 759
BspACI CCGC 9 cut(s) 317, 416, 474, 629, 793, 1543, 1706, 1738, 1877
BspANI GGCC 2 cut(s) 1092, 1344
BspCNI CTCAG 4 cut(s) 703, 751, 1078, 1258
BspFNI CGCG 1 cut(s) 2043
BspLI GGNNCC 5 cut(s) 235, 537, 627, 753, 1121
BspMAI CTGCAG 2 cut(s) 34, 1669
BspMI ACCTGC 1 cut(s) 763
BspPI GGATC 5 cut(s) 43, 79, 114, 1024, 1249
BspT107I GGYRCC 1 cut(s) 751
BspTNI GGTCTC 1 cut(s) 594
BsrFI RCCGGY 1 cut(s) 1092
BsrI ACTGG 4 cut(s) 307, 327, 1258, 1320
BssAI RCCGGY 1 cut(s) 1092
BssECI CCNNGG 3 cut(s) 774, 1151, 1842
BssNI GRCGYC 1 cut(s) 914
BssT1I CCWWGG 2 cut(s) 774, 1842
Bst2UI CCWGG 2 cut(s) 1152, 1782
Bst4CI ACNGT 6 cut(s) 925, 958, 1201, 1219, 1330, 1430
Bst6I CTCTTC 2 cut(s) 141, 809
BstACI GRCGYC 1 cut(s) 914
BstC8I GCNNGC 6 cut(s) 343, 366, 765, 1346, 1875, 1882
BstDEI CTNAG 6 cut(s) 690, 759, 1065, 1245, 1893, 2048
BstENI CCTNNNNNAGG 1 cut(s) 1700
BstF5I GGATG 8 cut(s) 10, 163, 331, 537, 703, 1004, 1551, 1686
BstFNI CGCG 1 cut(s) 2043
BstMAI GTCTC 2 cut(s) 594, 905
BstMCI CGRYCG 1 cut(s) 1742
BstMWI GCNNNNNNNGC 3 cut(s) 764, 1457, 1601
BstNI CCWGG 2 cut(s) 1152, 1782
BstNSI RCATGY 1 cut(s) 368
BstPAI GACNNNNGTC 2 cut(s) 1144, 1508
BstSCI CCNGG 2 cut(s) 1150, 1780
BstSFI CTRYAG 3 cut(s) 30, 1665, 1865
BstSLI GKGCMC 1 cut(s) 1162
BstUI CGCG 1 cut(s) 2043
BstV1I GCAGC 8 cut(s) 16, 23, 1061, 1299, 1469, 1668, 1679, 1969
BstV2I GAAGAC 2 cut(s) 512, 1431
BstX2I RGATCY 3 cut(s) 106, 1241, 1861
BstYI RGATCY 3 cut(s) 106, 1241, 1861
Bsu36I CCTNAGG 1 cut(s) 1065
BsuI GTATCC 1 cut(s) 557
BsuRI GGCC 2 cut(s) 1092, 1344
BtsCI GGATG 8 cut(s) 10, 163, 331, 537, 703, 1004, 1551, 1686
BtsIMutI CAGTG 3 cut(s) 320, 1327, 1435
BveI ACCTGC 1 cut(s) 763
Cac8I GCNNGC 6 cut(s) 343, 366, 765, 1346, 1875, 1882
CaiI CAGNNNCTG 2 cut(s) 1873, 1940
Cfr10I RCCGGY 1 cut(s) 1092
Cfr13I GGNCC 2 cut(s) 314, 893
CseI GACGC 1 cut(s) 1601
Csp6I GTAC 3 cut(s) 752, 856, 1026
CspCI CAANNNNNGTGG 2 cut(s) 675, 710
CviAII CATG 6 cut(s) 277, 365, 985, 1166, 1175, 1435
CviQI GTAC 3 cut(s) 752, 856, 1026
DdeI CTNAG 6 cut(s) 690, 759, 1065, 1245, 1893, 2048
EaeI YGGCCR 1 cut(s) 1342
Eam1104I CTCTTC 2 cut(s) 141, 809
EarI CTCTTC 2 cut(s) 141, 809
EciI GGCGGA 2 cut(s) 306, 1558
Eco130I CCWWGG 2 cut(s) 774, 1842
Eco31I GGTCTC 1 cut(s) 594
Eco32I GATATC 1 cut(s) 583
Eco47I GGWCC 2 cut(s) 314, 893
Eco57I CTGAAG 2 cut(s) 579, 1799
Eco81I CCTNAGG 1 cut(s) 1065
Eco88I CYCGRG 3 cut(s) 675, 1124, 2017
EcoNI CCTNNNNNAGG 1 cut(s) 1700
EcoRI GAATTC 1 cut(s) 1392
EcoRII CCWGG 2 cut(s) 1150, 1780
EcoRV GATATC 1 cut(s) 583
EcoT14I CCWWGG 2 cut(s) 774, 1842
ErhI CCWWGG 2 cut(s) 774, 1842
Esp3I CGTCTC 1 cut(s) 905
FaeI CATG 6 cut(s) 280, 368, 988, 1169, 1178, 1438
FalI AAGNNNNNCTT 2 cut(s) 779, 811
FaqI GGGAC 2 cut(s) 834, 1045
FatI CATG 6 cut(s) 276, 364, 984, 1165, 1174, 1434
FauNDI CATATG 1 cut(s) 1294
FbaI TGATCA 1 cut(s) 1267
FokI GGATG 8 cut(s) 17, 170, 338, 544, 710, 1011, 1558, 1673
FspBI CTAG 5 cut(s) 810, 885, 903, 966, 1485
GsaI CCCAGC 1 cut(s) 1391
GsuI CTGGAG 4 cut(s) 290, 522, 1803, 1932
HaeIII GGCC 2 cut(s) 1092, 1344
HapII CCGG 1 cut(s) 1093
HgaI GACGC 1 cut(s) 1601
Hin1I GRCGYC 1 cut(s) 914
Hin1II CATG 6 cut(s) 280, 368, 988, 1169, 1178, 1438
HincII GTYRAC 1 cut(s) 1513
HindII GTYRAC 1 cut(s) 1513
HinfI GANTC 9 cut(s) 149, 817, 1169, 1355, 1361, 1438, 1520, 1562, 1847
HpaII CCGG 1 cut(s) 1093
HphI GGTGA 6 cut(s) 92, 455, 638, 943, 1140, 1771
Hpy166II GTNNAC 3 cut(s) 971, 1160, 1513
Hpy188I TCNGA 9 cut(s) 154, 559, 596, 919, 1281, 1360, 1561, 1579, 1732
Hpy8I GTNNAC 3 cut(s) 971, 1160, 1513
HpyAV CCTTC 9 cut(s) 383, 554, 568, 742, 922, 1082, 1501, 1701, 1718
HpyCH4III ACNGT 6 cut(s) 925, 958, 1201, 1219, 1330, 1430
HpyCH4IV ACGT 2 cut(s) 847, 914
HpyF10VI GCNNNNNNNGC 3 cut(s) 764, 1457, 1601
HpyF3I CTNAG 6 cut(s) 690, 759, 1065, 1245, 1893, 2048
HpySE526I ACGT 2 cut(s) 847, 914
Hsp92I GRCGYC 1 cut(s) 914
Hsp92II CATG 6 cut(s) 280, 368, 988, 1169, 1178, 1438
KpnI GGTACC 1 cut(s) 755
Ksp22I TGATCA 1 cut(s) 1267
LmnI GCTCC 6 cut(s) 55, 541, 625, 1125, 1784, 1870
Lsp1109I GCAGC 8 cut(s) 16, 23, 1061, 1299, 1469, 1668, 1679, 1969
LweI GCATC 3 cut(s) 1300, 1613, 1893
MaeI CTAG 5 cut(s) 810, 885, 903, 966, 1485
MaeII ACGT 2 cut(s) 847, 914
MaeIII GTNAC 6 cut(s) 195, 353, 931, 1105, 1133, 1146
MfeI CAATTG 2 cut(s) 369, 1419
MflI RGATCY 3 cut(s) 106, 1241, 1861
MhlI GDGCHC 1 cut(s) 1162
MlsI TGGCCA 1 cut(s) 1344
MluNI TGGCCA 1 cut(s) 1344
MlyI GAGTC 2 cut(s) 158, 826
MmeI TCCRAC 1 cut(s) 675
Mox20I TGGCCA 1 cut(s) 1344
MroXI GAANNNNTTC 2 cut(s) 546, 957
MscI TGGCCA 1 cut(s) 1344
MseI TTAA 3 cut(s) 111, 411, 450
MslI CAYNNNNRTG 1 cut(s) 1179
Msp20I TGGCCA 1 cut(s) 1344
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 1 cut(s) 1093
MspR9I CCNGG 2 cut(s) 1152, 1782
MunI CAATTG 2 cut(s) 369, 1419
Mva1269I GAATGC 1 cut(s) 345
MvaI CCWGG 2 cut(s) 1152, 1782
MvnI CGCG 1 cut(s) 2043
MwoI GCNNNNNNNGC 3 cut(s) 764, 1457, 1601
NdeI CATATG 1 cut(s) 1294
NlaIII CATG 6 cut(s) 280, 368, 988, 1169, 1178, 1438
NlaIV GGNNCC 5 cut(s) 235, 537, 627, 753, 1121
NmuCI GTSAC 4 cut(s) 195, 353, 931, 1146
NspI RCATGY 1 cut(s) 368
PaeI GCATGC 1 cut(s) 368
PaeR7I CTCGAG 2 cut(s) 675, 2017
PcsI WCGNNNNNNNCGW 1 cut(s) 1379
PctI GAATGC 1 cut(s) 345
PdmI GAANNNNTTC 2 cut(s) 546, 957
PfeI GAWTC 7 cut(s) 1169, 1355, 1361, 1438, 1520, 1562, 1847
PleI GAGTC 2 cut(s) 157, 825
PpsI GAGTC 2 cut(s) 157, 825
PshAI GACNNNNGTC 2 cut(s) 1144, 1508
Psp6I CCWGG 2 cut(s) 1150, 1780
PspFI CCCAGC 1 cut(s) 1387
PspGI CCWGG 2 cut(s) 1150, 1780
PspN4I GGNNCC 5 cut(s) 235, 537, 627, 753, 1121
PspPI GGNCC 2 cut(s) 314, 893
PstI CTGCAG 2 cut(s) 34, 1669
PstNI CAGNNNCTG 2 cut(s) 1873, 1940
PsuI RGATCY 3 cut(s) 106, 1241, 1861
PvuII CAGCTG 1 cut(s) 14
RsaI GTAC 3 cut(s) 753, 857, 1027
RsaNI GTAC 3 cut(s) 752, 856, 1026
RseI CAYNNNNRTG 1 cut(s) 1179
SaqAI TTAA 3 cut(s) 111, 411, 450
Sau96I GGNCC 2 cut(s) 314, 893
SchI GAGTC 2 cut(s) 158, 826
ScrFI CCNGG 2 cut(s) 1152, 1782
SduI GDGCHC 1 cut(s) 1162
SfaNI GCATC 3 cut(s) 1300, 1613, 1893
SfcI CTRYAG 3 cut(s) 30, 1665, 1865
Sfr274I CTCGAG 2 cut(s) 675, 2017
SinI GGWCC 2 cut(s) 314, 893
SlaI CTCGAG 2 cut(s) 675, 2017
SmiMI CAYNNNNRTG 1 cut(s) 1179
SmlI CTYRAG 4 cut(s) 675, 830, 1620, 2017
SmoI CTYRAG 4 cut(s) 675, 830, 1620, 2017
SphI GCATGC 1 cut(s) 368
SsiI CCGC 9 cut(s) 317, 416, 474, 629, 793, 1543, 1706, 1738, 1877
SspI AATATT 1 cut(s) 377
SspMI CTAG 5 cut(s) 810, 885, 903, 966, 1485
StyD4I CCNGG 2 cut(s) 1150, 1780
StyI CCWWGG 2 cut(s) 774, 1842
TaaI ACNGT 6 cut(s) 925, 958, 1201, 1219, 1330, 1430
TaiI ACGT 2 cut(s) 850, 917
TaqI TCGA 7 cut(s) 205, 676, 712, 961, 1369, 1382, 2018
TauI GCSGC 3 cut(s) 419, 631, 1880
TfiI GAWTC 7 cut(s) 1169, 1355, 1361, 1438, 1520, 1562, 1847
Tru1I TTAA 3 cut(s) 111, 411, 450
Tru9I TTAA 3 cut(s) 111, 411, 450
TscAI CASTG 3 cut(s) 327, 1327, 1435
TseFI GTSAC 4 cut(s) 195, 353, 931, 1146
TseI GCWGC 8 cut(s) 11, 29, 1049, 1287, 1457, 1667, 1681, 1957
Tsp45I GTSAC 4 cut(s) 195, 353, 931, 1146
TspRI CASTG 3 cut(s) 327, 1327, 1435
VneI GTGCAC 1 cut(s) 1158
VpaK11BI GGWCC 2 cut(s) 314, 893
XagI CCTNNNNNAGG 1 cut(s) 1700
XapI RAATTY 6 cut(s) 183, 396, 553, 725, 1392, 1762
XceI RCATGY 1 cut(s) 368
XhoI CTCGAG 2 cut(s) 675, 2017
XmnI GAANNNNTTC 2 cut(s) 546, 957
XspI CTAG 5 cut(s) 810, 885, 903, 966, 1485
ZraI GACGTC 1 cut(s) 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.