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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 62, 73, 110 |
| AclWI | GGATC | 1 cut(s) | 32 |
| AcsI | RAATTY | 1 cut(s) | 436 |
| AgsI | TTSAA | 2 cut(s) | 31, 154 |
| AjnI | CCWGG | 1 cut(s) | 534 |
| AluBI | AGCT | 4 cut(s) | 182, 212, 326, 508 |
| AluI | AGCT | 4 cut(s) | 182, 212, 326, 508 |
| AlwI | GGATC | 1 cut(s) | 32 |
| AoxI | GGCC | 3 cut(s) | 185, 343, 468 |
| ApeKI | GCWGC | 4 cut(s) | 113, 169, 292, 376 |
| ApoI | RAATTY | 1 cut(s) | 436 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 402, 434 |
| AspS9I | GGNCC | 3 cut(s) | 185, 468, 487 |
| AsuHPI | GGTGA | 1 cut(s) | 347 |
| AvaII | GGWCC | 1 cut(s) | 487 |
| BbsI | GAAGAC | 1 cut(s) | 468 |
| BbvI | GCAGC | 4 cut(s) | 125, 181, 304, 388 |
| BccI | CCATC | 1 cut(s) | 127 |
| BciT130I | CCWGG | 1 cut(s) | 536 |
| BfaI | CTAG | 3 cut(s) | 140, 197, 371 |
| BisI | GCNGC | 7 cut(s) | 62, 74, 111, 114, 170, 293, 377 |
| BlsI | GCNGC | 7 cut(s) | 63, 75, 112, 115, 171, 294, 378 |
| Bme1390I | CCNGG | 1 cut(s) | 536 |
| Bme18I | GGWCC | 1 cut(s) | 487 |
| BmgT120I | GGNCC | 3 cut(s) | 185, 468, 487 |
| BmiI | GGNNCC | 1 cut(s) | 60 |
| BmrFI | CCNGG | 1 cut(s) | 536 |
| BmrI | ACTGGG | 1 cut(s) | 475 |
| BmsI | GCATC | 1 cut(s) | 412 |
| BmuI | ACTGGG | 1 cut(s) | 475 |
| BpiI | GAAGAC | 1 cut(s) | 468 |
| BpmI | CTGGAG | 1 cut(s) | 74 |
| BsaAI | YACGTR | 1 cut(s) | 256 |
| BsaJI | CCNNGG | 1 cut(s) | 516 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 378, 408 |
| Bse1I | ACTGG | 1 cut(s) | 470 |
| Bse3DI | GCAATG | 2 cut(s) | 83, 302 |
| BseBI | CCWGG | 1 cut(s) | 536 |
| BseDI | CCNNGG | 1 cut(s) | 516 |
| BseGI | GGATG | 1 cut(s) | 283 |
| BseMI | GCAATG | 2 cut(s) | 83, 302 |
| BseNI | ACTGG | 1 cut(s) | 470 |
| BseRI | GAGGAG | 2 cut(s) | 23, 71 |
| BseXI | GCAGC | 4 cut(s) | 125, 181, 304, 388 |
| BseYI | CCCAGC | 1 cut(s) | 182 |
| BshFI | GGCC | 3 cut(s) | 187, 345, 470 |
| BsnI | GGCC | 3 cut(s) | 187, 345, 470 |
| Bsp143I | GATC | 1 cut(s) | 37 |
| Bsp19I | CCATGG | 1 cut(s) | 516 |
| BspACI | CCGC | 3 cut(s) | 62, 73, 110 |
| BspANI | GGCC | 3 cut(s) | 187, 345, 470 |
| BspHI | TCATGA | 2 cut(s) | 301, 402 |
| BspLI | GGNNCC | 1 cut(s) | 60 |
| BspPI | GGATC | 1 cut(s) | 32 |
| BsrDI | GCAATG | 2 cut(s) | 83, 302 |
| BsrI | ACTGG | 1 cut(s) | 470 |
| BssECI | CCNNGG | 1 cut(s) | 516 |
| BssMI | GATC | 1 cut(s) | 37 |
| BssT1I | CCWWGG | 1 cut(s) | 516 |
| Bst2UI | CCWGG | 1 cut(s) | 536 |
| BstBAI | YACGTR | 1 cut(s) | 256 |
| BstC8I | GCNNGC | 1 cut(s) | 210 |
| BstDEI | CTNAG | 1 cut(s) | 272 |
| BstDSI | CCRYGG | 1 cut(s) | 516 |
| BstF5I | GGATG | 1 cut(s) | 283 |
| BstKTI | GATC | 1 cut(s) | 40 |
| BstMBI | GATC | 1 cut(s) | 37 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 58, 70 |
| BstNI | CCWGG | 1 cut(s) | 536 |
| BstSCI | CCNGG | 1 cut(s) | 534 |
| BstSNI | TACGTA | 1 cut(s) | 256 |
| BstV1I | GCAGC | 4 cut(s) | 125, 181, 304, 388 |
| BstV2I | GAAGAC | 1 cut(s) | 468 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 523 |
| BsuRI | GGCC | 3 cut(s) | 187, 345, 470 |
| BtgI | CCRYGG | 1 cut(s) | 516 |
| BtsCI | GGATG | 1 cut(s) | 283 |
| Cac8I | GCNNGC | 1 cut(s) | 210 |
| CciI | TCATGA | 2 cut(s) | 301, 402 |
| Cfr13I | GGNCC | 3 cut(s) | 185, 468, 487 |
| CviAII | CATG | 6 cut(s) | 5, 65, 302, 359, 403, 517 |
| DdeI | CTNAG | 1 cut(s) | 272 |
| DpnI | GATC | 1 cut(s) | 39 |
| DpnII | GATC | 1 cut(s) | 37 |
| Eco105I | TACGTA | 1 cut(s) | 256 |
| Eco130I | CCWWGG | 1 cut(s) | 516 |
| Eco47I | GGWCC | 1 cut(s) | 487 |
| EcoO109I | RGGNCCY | 1 cut(s) | 487 |
| EcoRII | CCWGG | 1 cut(s) | 534 |
| EcoT14I | CCWWGG | 1 cut(s) | 516 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| ErhI | CCWWGG | 1 cut(s) | 516 |
| FaeI | CATG | 6 cut(s) | 8, 68, 305, 362, 406, 520 |
| FatI | CATG | 6 cut(s) | 4, 64, 301, 358, 402, 516 |
| Fnu4HI | GCNGC | 7 cut(s) | 62, 74, 111, 114, 170, 293, 377 |
| FokI | GGATG | 1 cut(s) | 290 |
| Fsp4HI | GCNGC | 7 cut(s) | 62, 74, 111, 114, 170, 293, 377 |
| FspBI | CTAG | 3 cut(s) | 140, 197, 371 |
| GluI | GCNGC | 7 cut(s) | 62, 74, 111, 114, 170, 293, 377 |
| GsaI | CCCAGC | 1 cut(s) | 186 |
| GsuI | CTGGAG | 1 cut(s) | 74 |
| HaeIII | GGCC | 3 cut(s) | 187, 345, 470 |
| Hin1II | CATG | 6 cut(s) | 8, 68, 305, 362, 406, 520 |
| HphI | GGTGA | 1 cut(s) | 347 |
| Hpy166II | GTNNAC | 1 cut(s) | 526 |
| Hpy188I | TCNGA | 1 cut(s) | 97 |
| Hpy188III | TCNNGA | 3 cut(s) | 302, 371, 403 |
| Hpy8I | GTNNAC | 1 cut(s) | 526 |
| HpyAV | CCTTC | 1 cut(s) | 404 |
| HpyCH4IV | ACGT | 1 cut(s) | 255 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 44, 169, 223, 247, 268 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 58, 70 |
| HpyF3I | CTNAG | 1 cut(s) | 272 |
| HpySE526I | ACGT | 1 cut(s) | 255 |
| Hsp92II | CATG | 6 cut(s) | 8, 68, 305, 362, 406, 520 |
| Kzo9I | GATC | 1 cut(s) | 37 |
| LmnI | GCTCC | 2 cut(s) | 58, 98 |
| LpnPI | CCDG | 6 cut(s) | 38, 54, 168, 222, 451, 521 |
| Lsp1109I | GCAGC | 4 cut(s) | 125, 181, 304, 388 |
| LweI | GCATC | 1 cut(s) | 412 |
| MaeI | CTAG | 3 cut(s) | 140, 197, 371 |
| MaeII | ACGT | 1 cut(s) | 255 |
| MaeIII | GTNAC | 1 cut(s) | 256 |
| MalI | GATC | 1 cut(s) | 39 |
| MboI | GATC | 1 cut(s) | 37 |
| MboII | GAAGA | 2 cut(s) | 212, 473 |
| MluCI | AATT | 3 cut(s) | 161, 312, 436 |
| MnlI | CCTC | 5 cut(s) | 4, 16, 49, 226, 478 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MslI | CAYNNNNRTG | 2 cut(s) | 127, 521 |
| MspA1I | CMGCKG | 1 cut(s) | 212 |
| MspR9I | CCNGG | 1 cut(s) | 536 |
| MvaI | CCWGG | 1 cut(s) | 536 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 58, 70 |
| NcoI | CCATGG | 1 cut(s) | 516 |
| NdeII | GATC | 1 cut(s) | 37 |
| NlaIII | CATG | 6 cut(s) | 8, 68, 305, 362, 406, 520 |
| NlaIV | GGNNCC | 1 cut(s) | 60 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PagI | TCATGA | 2 cut(s) | 301, 402 |
| PkrI | GCNGC | 7 cut(s) | 63, 75, 112, 115, 171, 294, 378 |
| Ppu21I | YACGTR | 1 cut(s) | 256 |
| PpuMI | RGGWCCY | 1 cut(s) | 487 |
| Psp5II | RGGWCCY | 1 cut(s) | 487 |
| Psp6I | CCWGG | 1 cut(s) | 534 |
| PspFI | CCCAGC | 1 cut(s) | 182 |
| PspGI | CCWGG | 1 cut(s) | 534 |
| PspN4I | GGNNCC | 1 cut(s) | 60 |
| PspPI | GGNCC | 3 cut(s) | 185, 468, 487 |
| PspPPI | RGGWCCY | 1 cut(s) | 487 |
| PvuII | CAGCTG | 1 cut(s) | 212 |
| RseI | CAYNNNNRTG | 2 cut(s) | 127, 521 |
| SatI | GCNGC | 7 cut(s) | 62, 74, 111, 114, 170, 293, 377 |
| Sau3AI | GATC | 1 cut(s) | 37 |
| Sau96I | GGNCC | 3 cut(s) | 185, 468, 487 |
| ScrFI | CCNGG | 1 cut(s) | 536 |
| SetI | ASST | 7 cut(s) | 91, 184, 214, 258, 328, 492, 510 |
| SfaNI | GCATC | 1 cut(s) | 412 |
| SinI | GGWCC | 1 cut(s) | 487 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 127, 521 |
| SnaBI | TACGTA | 1 cut(s) | 256 |
| Sse9I | AATT | 3 cut(s) | 161, 312, 436 |
| SsiI | CCGC | 3 cut(s) | 62, 73, 110 |
| SspMI | CTAG | 3 cut(s) | 140, 197, 371 |
| StyD4I | CCNGG | 1 cut(s) | 534 |
| StyI | CCWWGG | 1 cut(s) | 516 |
| TaiI | ACGT | 1 cut(s) | 258 |
| TaqI | TCGA | 1 cut(s) | 420 |
| TaqII | GACCGA | 1 cut(s) | 422 |
| TasI | AATT | 3 cut(s) | 161, 312, 436 |
| TauI | GCSGC | 3 cut(s) | 64, 76, 113 |
| TseI | GCWGC | 4 cut(s) | 113, 169, 292, 376 |
| TspDTI | ATGAA | 4 cut(s) | 294, 345, 405, 509 |
| VpaK11BI | GGWCC | 1 cut(s) | 487 |
| XapI | RAATTY | 1 cut(s) | 436 |
| XbaI | TCTAGA | 1 cut(s) | 370 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 126, 478 |
| XspI | CTAG | 3 cut(s) | 140, 197, 371 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |