Rmu_sc0003878.1_g000041
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003878.1
OG0000076
Physical Location & Seq
Reverse (-)
188238 .. 188891
654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003878.1_g000041.1.cds

Sequence Viewer

Length: 654 bp
atggaagatgaactactcatgttctaccttaagcctaaagtgaacgggatggaagtgcctggcaacggagacgttatctgcgagttggatctttacggtgacaacgatccttggaacatatgggaaagattcgaagcaagaaagacaaacgacctgaggaggaacaaagatctctacgtcttcacccaaaagaagaaaaagactgcaaaaagatcacgtataagccgaactgttgggagtggcggtacttggaaaggccagaatgcagccaaggagatctatcttcttgatgataatcagcagccaacgactactcttcttggtttcaagaaaacctacacctataagaacaaggggtctgtgcatgatggtcgctggatcatgtatgagtttgaacttgataagtcacaactcatgcacaagaaacaagtaaacaagaatgactatgttctttgtttacttatgaaaaacgatgtactgccggaaagaaagagaaaaaggcaagaagaagaggagatgcttggagactatgtcgaggaccatgacggagataacgtagatcctgaatcggttactgaggagccgcaagagaaacggcaacgtcttctaccatcattagaagctgaacaagaacaattcttgcaccatcattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

217

Amino Acids

25.69

Weight (kDa)

5.94

Isoelectric Point (pI)

56.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53610 AT1G53620
fragaria_vesca FvH4_3g16890 FvH4_3g16900 FvH4_3g16910 FvH4_3g17012 FvH4_3g18170 FvH4_3g18460 FvH4_3g18930 FvH4_3g18940 FvH4_3g25560 FvH4_4g12410 FvH4_5g05980 FvH4_5g24860 FvH4_5g25360 FvH4_5g25510 FvH4_5g27470 FvH4_5g27620 FvH4_5g27760 FvH4_5g29460 FvH4_6g04191 FvH4_6g39190 FvH4_6g39200 FvH4_6g39580 FvH4_6g39600 FvH4_7g11470
malus_domestica MD00G1154700.v1.1 MD00G1154800.v1.1 MD00G1155000.v1.1 MD03G1255000.v1.1 MD03G1255100.v1.1 MD03G1255200.v1.1 MD03G1255300.v1.1 MD06G1030300.v1.1 MD11G1219300.v1.1 MD11G1264900.v1.1
prunus_persica Prupe.1G575600_v2.0.a1 Prupe.3G065000_v2.0.a1 Prupe.3G111400_v2.0.a1 Prupe.4G151300_v2.0.a1 Prupe.4G151900_v2.0.a1 Prupe.4G153700_v2.0.a1 Prupe.4G154000_v2.0.a1 Prupe.4G230600_v2.0.a1 Prupe.4G230900_v2.0.a1 Prupe.4G231000_v2.0.a1 Prupe.4G246100_v2.0.a1 Prupe.4G255500_v2.0.a1 Prupe.6G133600_v2.0.a1 Prupe.6G134000_v2.0.a1 Prupe.I005300_v2.0.a1
pyrus_communis pycom03g14030 pycom03g15340
rosa_chinensis RchiOBHm_Chr3g0452871 RchiOBHm_Chr5g0056721 RchiOBHm_Chr6g0271921 RchiOBHm_Chr7g0211251 RchiOBHm_Chr7g0231191
rosa_laevigata RLG00000000989 RLG00000001070 RLG00000001076 RLG00000001103 RLG00000001116 RLG00000001118 RLG00000001936 RLG00000001949 RLG00000002610 RLG00000002710 RLG00000003013 RLG00000013562 RLG00000013567 RLG00000018805 RLG00000020667 RLG00000020716 RLG00000020717 RLG00000025564 RLG00000028522 RLG00000030016 RLG00000033070 RLG00000033077 RLG00000033081 RLG00000033086 RLG00000033235 RLG00000033291 RLG00000033337 RLG00000033338 RLG00000033340 RLG00000033345 RLG00000033346 RLG00000033874 RLG00000033885 RLG00000034356 RLG00000034411 RLG00000034414
rosa_multiflora Rmu_co8273153.1_g000001 Rmu_co8288493.1_g000001 Rmu_co8293081.1_g000001 Rmu_co8429197.1_g000001 Rmu_sc0000055.1_g000007 Rmu_sc0000218.1_g000011 Rmu_sc0000533.1_g000061 Rmu_sc0000755.1_g000007 Rmu_sc0000758.1_g000005 Rmu_sc0000898.1_g000011 Rmu_sc0000898.1_g000025 Rmu_sc0001561.1_g000008 Rmu_sc0001571.1_g000004 Rmu_sc0002292.1_g000005 Rmu_sc0002292.1_g000006 Rmu_sc0002308.1_g000010 Rmu_sc0002449.1_g000010 Rmu_sc0002449.1_g000011 Rmu_sc0002536.1_g000004 Rmu_sc0002536.1_g000005 Rmu_sc0002536.1_g000015 Rmu_sc0003238.1_g000014 Rmu_sc0003545.1_g000015 Rmu_sc0003720.1_g000009 Rmu_sc0003878.1_g000040 Rmu_sc0003878.1_g000041 Rmu_sc0003878.1_g000047 Rmu_sc0003878.1_g000048 Rmu_sc0003972.1_g000001 Rmu_sc0004322.1_g000008 Rmu_sc0004379.1_g000014 Rmu_sc0005478.1_g000002 Rmu_sc0006240.1_g000008 Rmu_sc0006847.1_g000022 Rmu_sc0007753.1_g000022 Rmu_sc0007782.1_g000001 Rmu_sc0008328.1_g000002 Rmu_sc0008526.1_g000005 Rmu_sc0008835.1_g000013 Rmu_sc0014005.1_g000009 Rmu_sc0014478.1_g000004 Rmu_sc0015060.1_g000021 Rmu_sc0016364.1_g000001 Rmu_sc0016727.1_g000004 Rmu_sc0020600.1_g000008 Rmu_sc0022743.1_g000003 Rmu_sc0032116.1_g000002 Rmu_sc0033519.1_g000005 Rmu_sc0042823.1_g000001 Rmu_ssc0000134.1_g000011
rosa_roxburghii Rroxscaffold_1G00029360 Rroxscaffold_1G00034880 Rroxscaffold_1G00034930 Rroxscaffold_1G00034970 Rroxscaffold_1G00042100 Rroxscaffold_1G00049130 Rroxscaffold_1G00049660 Rroxscaffold_1G00051410 Rroxscaffold_2G00094840 Rroxscaffold_2G00094850 Rroxscaffold_2G00095300 Rroxscaffold_3G00224990 Rroxscaffold_3G00225050 Rroxscaffold_3G00225080 Rroxscaffold_3G00225360 Rroxscaffold_3G00235370 Rroxscaffold_3G00243820 Rroxscaffold_3G00243860 Rroxscaffold_3G00243920 Rroxscaffold_3G00244920 Rroxscaffold_4G00305330 Rroxscaffold_5G00373100 Rroxscaffold_6G00407840 Rroxscaffold_6G00422000 Rroxscaffold_6G00429880 Rroxscaffold_7G00186180
rosa_rugosa Rorug01G0120600 Rorug01G0127200 Rorug01G0128500 Rorug01G0206000 Rorug02G0251400 Rorug02G0420800 Rorug02G0436800 Rorug02G0441000 Rorug02G0643100 Rorug03G0339200 Rorug04G0168000 Rorug04G0168100 Rorug05G0104500 Rorug05G0105300 Rorug05G0105700 Rorug05G0105800 Rorug05G0118900 Rorug05G0175700 Rorug05G0228200 Rorug05G0229000 Rorug05G0229500 Rorug06G0064300 Rorug07G0124700 Rorug07G0156100 Rorug07G0156700 Rorug07G0158100 Rorug07G0219600 Rorug07G0273400 Rorug07G0291800 Rorug07G0294300 Rorug07G0297400 Rorug07G0297800
rosa_samantha Rh1BG189400 Rh1CG103600 Rh1CG142100 Rh1CG208100 Rh1DG209200 Rh2CG296600 Rh2CG301600 Rh2CG485100 Rh2CG489800 Rh2CG490000 Rh2DG333700 Rh2DG526600 Rh2DG526800 Rh3BG048500 Rh3CG047100 Rh3DG048100 Rh5AG198800 Rh5AG211300 Rh5AG213900 Rh5AG217700 Rh5AG221800 Rh5AG225800 Rh5AG262500 Rh5AG309600 Rh5BG210200 Rh5CG216300 Rh5CG217100 Rh5CG217500 Rh5CG233900 Rh5CG236800 Rh5CG239600 Rh5CG241200 Rh5CG244900 Rh5CG245100 Rh5CG254600 Rh5CG299700 Rh5CG343400 Rh5CG343600 Rh5CG406800 Rh5DG215100 Rh5DG215200 Rh5DG220900 Rh5DG222800 Rh5DG226600 Rh5DG226700 Rh5DG226800 Rh5DG231600 Rh5DG273600 Rh5DG327700 Rh5DG328300 Rh6BG185200 Rh6DG174700 Rh7AG257100 Rh7AG285100 Rh7AG293000 Rh7AG294700 Rh7AG296700 Rh7AG297200 Rh7AG298400 Rh7AG306700 Rh7AG362600 Rh7AG379100 Rh7AG449400 Rh7AG451800 Rh7AG453400 Rh7AG453500 Rh7AG459000 Rh7BG251000 Rh7BG275900 Rh7BG276100 Rh7BG276800 Rh7BG285400 Rh7BG353800 Rh7BG400900 Rh7BG418600 Rh7BG421100 Rh7BG424000 Rh7BG424300 Rh7BG424400 Rh7DG288700
rosa_wichuraiana Rw0G000390 Rw0G010750 Rw0G015930 Rw0G020680 Rw0G023760 Rw1G008930 Rw1G012360 Rw1G019040 Rw2G025060 Rw2G041400 Rw2G041420 Rw3G003610 Rw5G018050 Rw5G018130 Rw5G019340 Rw5G019550 Rw5G020700 Rw5G024510 Rw5G036060 Rw6G015630 Rw7G021960 Rw7G024340 Rw7G024900 Rw7G024940 Rw7G025030 Rw7G025280 Rw7G030800 Rw7G032090 Rw7G037610 Rw7G038010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 243, 584
AclWI GGATC 4 cut(s) 96, 101, 386, 554
AfaI GTAC 2 cut(s) 247, 477
AfiI CCNNNNNNNGG 1 cut(s) 65
AflII CTTAAG 1 cut(s) 29
AgsI TTSAA 2 cut(s) 328, 395
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 1 cut(s) 623
AluI AGCT 1 cut(s) 623
Alw26I GTCTC 2 cut(s) 63, 519
AlwI GGATC 4 cut(s) 96, 101, 386, 554
AoxI GGCC 1 cut(s) 256
ApeKI GCWGC 2 cut(s) 266, 301
AspS9I GGNCC 1 cut(s) 538
AsuHPI GGTGA 2 cut(s) 110, 175
AsuII TTCGAA 1 cut(s) 132
AvaII GGWCC 1 cut(s) 538
AxyI CCTNAGG 1 cut(s) 155
BarI GAAGNNNNNNTAC 1 cut(s) 29
BbsI GAAGAC 2 cut(s) 172, 596
BbvI GCAGC 2 cut(s) 278, 313
BccI CCATC 3 cut(s) 43, 362, 619
BceAI ACGGC 1 cut(s) 611
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BciT130I CCWGG 1 cut(s) 60
BcoDI GTCTC 2 cut(s) 63, 519
BfrI CTTAAG 1 cut(s) 29
BglII AGATCT 2 cut(s) 169, 276
BisI GCNGC 3 cut(s) 267, 302, 584
BlsI GCNGC 3 cut(s) 268, 303, 585
Bme1390I CCNGG 1 cut(s) 60
Bme18I GGWCC 1 cut(s) 538
BmgT120I GGNCC 1 cut(s) 538
BmiI GGNNCC 1 cut(s) 582
BmrFI CCNGG 1 cut(s) 60
BmsI GCATC 1 cut(s) 507
BpiI GAAGAC 2 cut(s) 172, 596
Bpu14I TTCGAA 1 cut(s) 132
BsaAI YACGTR 1 cut(s) 218
BsaBI GATNNNNATC 1 cut(s) 294
BsaJI CCNNGG 2 cut(s) 110, 270
BsaXI ACNNNNNCTCC 6 cut(s) 229, 259, 516, 540, 546, 570
Bsc4I CCNNNNNNNGG 1 cut(s) 65
Bse21I CCTNAGG 1 cut(s) 155
Bse8I GATNNNNATC 1 cut(s) 294
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 2 cut(s) 110, 270
BseGI GGATG 1 cut(s) 54
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 65
BseMII CTCAG 2 cut(s) 146, 567
BseRI GAGGAG 3 cut(s) 172, 527, 593
BseXI GCAGC 2 cut(s) 278, 313
BshFI GGCC 1 cut(s) 258
BsiSI CCGG 1 cut(s) 482
BslI CCNNNNNNNGG 1 cut(s) 65
BsmAI GTCTC 2 cut(s) 63, 519
BsmBI CGTCTC 1 cut(s) 63
BsmI GAATGC 1 cut(s) 268
BsnI GGCC 1 cut(s) 258
Bsp119I TTCGAA 1 cut(s) 132
Bsp143I GATC 7 cut(s) 88, 106, 169, 212, 276, 378, 559
BspACI CCGC 2 cut(s) 243, 584
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 2 cut(s) 147, 568
BspLI GGNNCC 1 cut(s) 582
BspPI GGATC 4 cut(s) 96, 101, 386, 554
BspT104I TTCGAA 1 cut(s) 132
BspTI CTTAAG 1 cut(s) 29
BssECI CCNNGG 2 cut(s) 110, 270
BssMI GATC 7 cut(s) 88, 106, 169, 212, 276, 378, 559
BssT1I CCWWGG 2 cut(s) 110, 270
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 2 cut(s) 98, 232
Bst6I CTCTTC 2 cut(s) 321, 504
BstAFI CTTAAG 1 cut(s) 29
BstBAI YACGTR 1 cut(s) 218
BstBI TTCGAA 1 cut(s) 132
BstDEI CTNAG 2 cut(s) 155, 576
BstF5I GGATG 1 cut(s) 54
BstKTI GATC 7 cut(s) 91, 109, 172, 215, 279, 381, 562
BstMAI GTCTC 2 cut(s) 63, 519
BstMBI GATC 7 cut(s) 88, 106, 169, 212, 276, 378, 559
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BstV1I GCAGC 2 cut(s) 278, 313
BstV2I GAAGAC 2 cut(s) 172, 596
BstX2I RGATCY 4 cut(s) 88, 169, 276, 559
BstYI RGATCY 4 cut(s) 88, 169, 276, 559
Bsu36I CCTNAGG 1 cut(s) 155
BsuRI GGCC 1 cut(s) 258
BtsCI GGATG 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 538
Csp6I GTAC 2 cut(s) 246, 476
CviAII CATG 5 cut(s) 19, 365, 382, 415, 542
CviJI RGCY 7 cut(s) 34, 225, 258, 269, 304, 583, 623
CviKI_1 RGCY 7 cut(s) 34, 225, 258, 269, 304, 583, 623
CviQI GTAC 2 cut(s) 246, 476
DdeI CTNAG 2 cut(s) 155, 576
DpnI GATC 7 cut(s) 90, 108, 171, 214, 278, 380, 561
DpnII GATC 7 cut(s) 88, 106, 169, 212, 276, 378, 559
Eam1104I CTCTTC 2 cut(s) 321, 504
EarI CTCTTC 2 cut(s) 321, 504
Eco130I CCWWGG 2 cut(s) 110, 270
Eco47I GGWCC 1 cut(s) 538
Eco81I CCTNAGG 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 58
EcoT14I CCWWGG 2 cut(s) 110, 270
ErhI CCWWGG 2 cut(s) 110, 270
Esp3I CGTCTC 1 cut(s) 63
FaeI CATG 5 cut(s) 22, 368, 385, 418, 545
FatI CATG 5 cut(s) 18, 364, 381, 414, 541
FauNDI CATATG 1 cut(s) 119
Fnu4HI GCNGC 3 cut(s) 267, 302, 584
FokI GGATG 1 cut(s) 61
Fsp4HI GCNGC 3 cut(s) 267, 302, 584
GluI GCNGC 3 cut(s) 267, 302, 584
HaeIII GGCC 1 cut(s) 258
HapII CCGG 1 cut(s) 482
Hin1II CATG 5 cut(s) 22, 368, 385, 418, 545
HinfI GANTC 2 cut(s) 129, 566
HpaII CCGG 1 cut(s) 482
HphI GGTGA 2 cut(s) 110, 175
Hpy166II GTNNAC 3 cut(s) 43, 433, 458
Hpy188III TCNNGA 3 cut(s) 287, 328, 563
Hpy8I GTNNAC 3 cut(s) 43, 433, 458
HpyCH4III ACNGT 2 cut(s) 98, 232
HpyCH4IV ACGT 5 cut(s) 72, 177, 217, 555, 601
HpyCH4V TGCA 5 cut(s) 206, 266, 364, 418, 643
HpyF3I CTNAG 2 cut(s) 155, 576
HpySE526I ACGT 5 cut(s) 72, 177, 217, 555, 601
Hsp92II CATG 5 cut(s) 22, 368, 385, 418, 545
Kzo9I GATC 7 cut(s) 88, 106, 169, 212, 276, 378, 559
LmnI GCTCC 1 cut(s) 580
LpnPI CCDG 7 cut(s) 45, 72, 167, 272, 361, 495, 576
Lsp1109I GCAGC 2 cut(s) 278, 313
LweI GCATC 1 cut(s) 507
MaeII ACGT 5 cut(s) 72, 177, 217, 555, 601
MaeIII GTNAC 3 cut(s) 98, 405, 571
MalI GATC 7 cut(s) 90, 108, 171, 214, 278, 380, 561
MboI GATC 7 cut(s) 88, 106, 169, 212, 276, 378, 559
MboII GAAGA 8 cut(s) 17, 172, 205, 275, 308, 518, 521, 596
MflI RGATCY 4 cut(s) 88, 169, 276, 559
MluCI AATT 1 cut(s) 635
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 5 cut(s) 150, 153, 505, 529, 571
MseI TTAA 2 cut(s) 30, 652
MspCI CTTAAG 1 cut(s) 29
MspI CCGG 1 cut(s) 482
MspR9I CCNGG 1 cut(s) 60
Mva1269I GAATGC 1 cut(s) 268
MvaI CCWGG 1 cut(s) 60
NdeI CATATG 1 cut(s) 119
NdeII GATC 7 cut(s) 88, 106, 169, 212, 276, 378, 559
NlaIII CATG 5 cut(s) 22, 368, 385, 418, 545
NlaIV GGNNCC 1 cut(s) 582
NmuCI GTSAC 2 cut(s) 98, 405
NspV TTCGAA 1 cut(s) 132
PcsI WCGNNNNNNNCGW 4 cut(s) 78, 102, 223, 552
PctI GAATGC 1 cut(s) 268
PfeI GAWTC 2 cut(s) 129, 566
PflFI GACNNNGTC 1 cut(s) 530
PkrI GCNGC 3 cut(s) 268, 303, 585
Ppu21I YACGTR 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 582
PspPI GGNCC 1 cut(s) 538
PsuI RGATCY 4 cut(s) 88, 169, 276, 559
PsyI GACNNNGTC 1 cut(s) 530
RsaI GTAC 2 cut(s) 247, 477
RsaNI GTAC 2 cut(s) 246, 476
SaqAI TTAA 2 cut(s) 30, 652
SatI GCNGC 3 cut(s) 267, 302, 584
Sau3AI GATC 7 cut(s) 88, 106, 169, 212, 276, 378, 559
Sau96I GGNCC 1 cut(s) 538
ScrFI CCNGG 1 cut(s) 60
SfaNI GCATC 1 cut(s) 507
SfuI TTCGAA 1 cut(s) 132
SinI GGWCC 1 cut(s) 538
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 1 cut(s) 635
SsiI CCGC 2 cut(s) 243, 584
StyD4I CCNGG 1 cut(s) 58
StyI CCWWGG 2 cut(s) 110, 270
TaaI ACNGT 2 cut(s) 98, 232
TaiI ACGT 5 cut(s) 75, 180, 220, 558, 604
TaqI TCGA 2 cut(s) 132, 534
TasI AATT 1 cut(s) 635
TatI WGTACW 1 cut(s) 475
TauI GCSGC 1 cut(s) 586
TfiI GAWTC 2 cut(s) 129, 566
Tru1I TTAA 2 cut(s) 30, 652
Tru9I TTAA 2 cut(s) 30, 652
TseFI GTSAC 2 cut(s) 98, 405
TseI GCWGC 2 cut(s) 266, 301
Tsp45I GTSAC 2 cut(s) 98, 405
TspDTI ATGAA 2 cut(s) 24, 479
TspGWI ACGGA 2 cut(s) 81, 561
Tth111I GACNNNGTC 1 cut(s) 530
Vha464I CTTAAG 1 cut(s) 29
VpaK11BI GGWCC 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.