Rroxscaffold_7G00186180
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000076
Physical Location & Seq
Forward (+)
25566392 .. 25567684
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00186180.1

Sequence Viewer

Length: 1293 bp
ATGCAGAAAGAATTTCCGATGGAGGAGTGCAGACTTCCTGGCCAGAGGTTCTGCCCCATGGAAGATGAACTCGTTCTCTTCTACCTCAAGCCCATGTTGAGCGGACAGATCGTGCCCGGCAGAAACCGCGTGGTGTTCGACTGCGACCTCTACGGTCACCAAGAACCTTGGGAGATATGGGAGGCCTTCAAGACCAAAAGACCACACGACTTGAGGCTCAACAAGGACATTTACTTCTTCACCCAACACAAGAAGATGAGTTGCACAGCCAAGCGCGTACGCCGGAATGTTGGAAGTGGCACCTGGAAGGGCGACGACTCCGGCAAGCCAGTACGATCTGTTGAAACTGGTCGTGTTGTTGGCTTGAAGAAAAGATATACTTACAAGAACGATGACTCGGTTCACAACGGCTGTTGGATCTTGTATGAGTTCTACCTTGATCAATCACTCAGAGACAATAAACAAAAGCTGGAAGACTATGTTCTTTGTCTACTACGAAAGAATGGTGAACCCAAAACCAAGATCGAAAAGAAGAGAAAGCAACGTGAAGAGGAAGAGGTTCTTGAAAACAATTATGCCTTTCATGATGGAGAAAAATCGAAAAGGGAGCAAGAAGAGTTGCTTGAGCCACAAGCGAAGCGGCAACGAATGGTGCCATCCATTGGTAATGCACCACTAACAATGCCATCAGAAGATGATGCTGCATTCGCAGCTGAACTAGAAGAGTCATTGGAATGCTTTGAAGATGATAATGCACCCTCAGAAGCTCGAGCAATTGGCTTTCAAGGTGGGGAGAATGGTGGACTCCAACAATTAGCAGCCGAGGTGCAATCAGGCCCTATATTTGTAGACGATCATGGAATATTTAATCCGCTGCCGGAGGAAGACTTTCTCTTGGCGGAAATGTTAGAAGAAATGGGTATGGTGGACATGGAAGAACTAGTTCTTATTAATGGTAAGAGTATTAATATAGATGTGGCAGCTGAAGAAAACGTGGAAAACAGCACCCTTCTCTCTGCTCCCACATCATCCATGTCTGCGGCCTATGATGGTTGCAATGATATGCCATATTTATCCTTGGAAAATGGTTGCATTGATCCATCTGGAAGCAATAATGTTTGTGGAGGATCGATTGGCTTTCAGGATAGTGTGTACTGGGTTGAGTCTTTGGTGGAGGTCCCAAGTACTGTTGAGCAACAAAAGACAGCTGATGAAGATTGTTCAGATTGGTTGGAGTCAATCAATTTTAGTCCTGAGGAGAACAACTTCCTTTTCAGTGAAATGCAACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

430

Amino Acids

48.96

Weight (kDa)

4.61

Isoelectric Point (pI)

61.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 13 - 145 1e-21 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53610 AT1G53620
fragaria_vesca FvH4_3g16890 FvH4_3g16900 FvH4_3g16910 FvH4_3g17012 FvH4_3g18170 FvH4_3g18460 FvH4_3g18930 FvH4_3g18940 FvH4_3g25560 FvH4_4g12410 FvH4_5g05980 FvH4_5g24860 FvH4_5g25360 FvH4_5g25510 FvH4_5g27470 FvH4_5g27620 FvH4_5g27760 FvH4_5g29460 FvH4_6g04191 FvH4_6g39190 FvH4_6g39200 FvH4_6g39580 FvH4_6g39600 FvH4_7g11470
malus_domestica MD00G1154700.v1.1 MD00G1154800.v1.1 MD00G1155000.v1.1 MD03G1255000.v1.1 MD03G1255100.v1.1 MD03G1255200.v1.1 MD03G1255300.v1.1 MD06G1030300.v1.1 MD11G1219300.v1.1 MD11G1264900.v1.1
prunus_persica Prupe.1G575600_v2.0.a1 Prupe.3G065000_v2.0.a1 Prupe.3G111400_v2.0.a1 Prupe.4G151300_v2.0.a1 Prupe.4G151900_v2.0.a1 Prupe.4G153700_v2.0.a1 Prupe.4G154000_v2.0.a1 Prupe.4G230600_v2.0.a1 Prupe.4G230900_v2.0.a1 Prupe.4G231000_v2.0.a1 Prupe.4G246100_v2.0.a1 Prupe.4G255500_v2.0.a1 Prupe.6G133600_v2.0.a1 Prupe.6G134000_v2.0.a1 Prupe.I005300_v2.0.a1
pyrus_communis pycom03g14030 pycom03g15340
rosa_chinensis RchiOBHm_Chr3g0452871 RchiOBHm_Chr5g0056721 RchiOBHm_Chr6g0271921 RchiOBHm_Chr7g0211251 RchiOBHm_Chr7g0231191
rosa_laevigata RLG00000000989 RLG00000001070 RLG00000001076 RLG00000001103 RLG00000001116 RLG00000001118 RLG00000001936 RLG00000001949 RLG00000002610 RLG00000002710 RLG00000003013 RLG00000013562 RLG00000013567 RLG00000018805 RLG00000020667 RLG00000020716 RLG00000020717 RLG00000025564 RLG00000028522 RLG00000030016 RLG00000033070 RLG00000033077 RLG00000033081 RLG00000033086 RLG00000033235 RLG00000033291 RLG00000033337 RLG00000033338 RLG00000033340 RLG00000033345 RLG00000033346 RLG00000033874 RLG00000033885 RLG00000034356 RLG00000034411 RLG00000034414
rosa_multiflora Rmu_co8273153.1_g000001 Rmu_co8288493.1_g000001 Rmu_co8293081.1_g000001 Rmu_co8429197.1_g000001 Rmu_sc0000055.1_g000007 Rmu_sc0000218.1_g000011 Rmu_sc0000533.1_g000061 Rmu_sc0000755.1_g000007 Rmu_sc0000758.1_g000005 Rmu_sc0000898.1_g000011 Rmu_sc0000898.1_g000025 Rmu_sc0001561.1_g000008 Rmu_sc0001571.1_g000004 Rmu_sc0002292.1_g000005 Rmu_sc0002292.1_g000006 Rmu_sc0002308.1_g000010 Rmu_sc0002449.1_g000010 Rmu_sc0002449.1_g000011 Rmu_sc0002536.1_g000004 Rmu_sc0002536.1_g000005 Rmu_sc0002536.1_g000015 Rmu_sc0003238.1_g000014 Rmu_sc0003545.1_g000015 Rmu_sc0003720.1_g000009 Rmu_sc0003878.1_g000040 Rmu_sc0003878.1_g000041 Rmu_sc0003878.1_g000047 Rmu_sc0003878.1_g000048 Rmu_sc0003972.1_g000001 Rmu_sc0004322.1_g000008 Rmu_sc0004379.1_g000014 Rmu_sc0005478.1_g000002 Rmu_sc0006240.1_g000008 Rmu_sc0006847.1_g000022 Rmu_sc0007753.1_g000022 Rmu_sc0007782.1_g000001 Rmu_sc0008328.1_g000002 Rmu_sc0008526.1_g000005 Rmu_sc0008835.1_g000013 Rmu_sc0014005.1_g000009 Rmu_sc0014478.1_g000004 Rmu_sc0015060.1_g000021 Rmu_sc0016364.1_g000001 Rmu_sc0016727.1_g000004 Rmu_sc0020600.1_g000008 Rmu_sc0022743.1_g000003 Rmu_sc0032116.1_g000002 Rmu_sc0033519.1_g000005 Rmu_sc0042823.1_g000001 Rmu_ssc0000134.1_g000011
rosa_roxburghii Rroxscaffold_1G00029360 Rroxscaffold_1G00034880 Rroxscaffold_1G00034930 Rroxscaffold_1G00034970 Rroxscaffold_1G00042100 Rroxscaffold_1G00049130 Rroxscaffold_1G00049660 Rroxscaffold_1G00051410 Rroxscaffold_2G00094840 Rroxscaffold_2G00094850 Rroxscaffold_2G00095300 Rroxscaffold_3G00224990 Rroxscaffold_3G00225050 Rroxscaffold_3G00225080 Rroxscaffold_3G00225360 Rroxscaffold_3G00235370 Rroxscaffold_3G00243820 Rroxscaffold_3G00243860 Rroxscaffold_3G00243920 Rroxscaffold_3G00244920 Rroxscaffold_4G00305330 Rroxscaffold_5G00373100 Rroxscaffold_6G00407840 Rroxscaffold_6G00422000 Rroxscaffold_6G00429880 Rroxscaffold_7G00186180
rosa_rugosa Rorug01G0120600 Rorug01G0127200 Rorug01G0128500 Rorug01G0206000 Rorug02G0251400 Rorug02G0420800 Rorug02G0436800 Rorug02G0441000 Rorug02G0643100 Rorug03G0339200 Rorug04G0168000 Rorug04G0168100 Rorug05G0104500 Rorug05G0105300 Rorug05G0105700 Rorug05G0105800 Rorug05G0118900 Rorug05G0175700 Rorug05G0228200 Rorug05G0229000 Rorug05G0229500 Rorug06G0064300 Rorug07G0124700 Rorug07G0156100 Rorug07G0156700 Rorug07G0158100 Rorug07G0219600 Rorug07G0273400 Rorug07G0291800 Rorug07G0294300 Rorug07G0297400 Rorug07G0297800
rosa_samantha Rh1BG189400 Rh1CG103600 Rh1CG142100 Rh1CG208100 Rh1DG209200 Rh2CG296600 Rh2CG301600 Rh2CG485100 Rh2CG489800 Rh2CG490000 Rh2DG333700 Rh2DG526600 Rh2DG526800 Rh3BG048500 Rh3CG047100 Rh3DG048100 Rh5AG198800 Rh5AG211300 Rh5AG213900 Rh5AG217700 Rh5AG221800 Rh5AG225800 Rh5AG262500 Rh5AG309600 Rh5BG210200 Rh5CG216300 Rh5CG217100 Rh5CG217500 Rh5CG233900 Rh5CG236800 Rh5CG239600 Rh5CG241200 Rh5CG244900 Rh5CG245100 Rh5CG254600 Rh5CG299700 Rh5CG343400 Rh5CG343600 Rh5CG406800 Rh5DG215100 Rh5DG215200 Rh5DG220900 Rh5DG222800 Rh5DG226600 Rh5DG226700 Rh5DG226800 Rh5DG231600 Rh5DG273600 Rh5DG327700 Rh5DG328300 Rh6BG185200 Rh6DG174700 Rh7AG257100 Rh7AG285100 Rh7AG293000 Rh7AG294700 Rh7AG296700 Rh7AG297200 Rh7AG298400 Rh7AG306700 Rh7AG362600 Rh7AG379100 Rh7AG449400 Rh7AG451800 Rh7AG453400 Rh7AG453500 Rh7AG459000 Rh7BG251000 Rh7BG275900 Rh7BG276100 Rh7BG276800 Rh7BG285400 Rh7BG353800 Rh7BG400900 Rh7BG418600 Rh7BG421100 Rh7BG424000 Rh7BG424300 Rh7BG424400 Rh7DG288700
rosa_wichuraiana Rw0G000390 Rw0G010750 Rw0G015930 Rw0G020680 Rw0G023760 Rw1G008930 Rw1G012360 Rw1G019040 Rw2G025060 Rw2G041400 Rw2G041420 Rw3G003610 Rw5G018050 Rw5G018130 Rw5G019340 Rw5G019550 Rw5G020700 Rw5G024510 Rw5G036060 Rw6G015630 Rw7G021960 Rw7G024340 Rw7G024900 Rw7G024940 Rw7G025030 Rw7G025280 Rw7G030800 Rw7G032090 Rw7G037610 Rw7G038010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 299, 652
AccB7I CCANNNNNTGG 1 cut(s) 662
AccBSI CCGCTC 1 cut(s) 102
AccI GTMKAC 2 cut(s) 490, 849
AccII CGCG 2 cut(s) 129, 276
AciI CCGC 6 cut(s) 102, 127, 640, 872, 899, 1040
AclWI GGATC 3 cut(s) 425, 1091, 1135
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 1 cut(s) 11
AcuI CTGAAG 1 cut(s) 1005
AfaI GTAC 4 cut(s) 279, 333, 1154, 1186
AfiI CCNNNNNNNGG 1 cut(s) 662
AgsI TTSAA 6 cut(s) 190, 344, 367, 566, 743, 785
AhlI ACTAGT 1 cut(s) 940
AjnI CCWGG 2 cut(s) 37, 302
AluBI AGCT 5 cut(s) 469, 713, 767, 983, 1208
AluI AGCT 5 cut(s) 469, 713, 767, 983, 1208
Alw26I GTCTC 1 cut(s) 447
AlwI GGATC 3 cut(s) 425, 1091, 1135
Ama87I CYCGRG 1 cut(s) 768
AoxI GGCC 4 cut(s) 40, 183, 835, 1041
ApeKI GCWGC 5 cut(s) 701, 710, 818, 874, 980
ApoI RAATTY 1 cut(s) 11
AseI ATTAAT 2 cut(s) 951, 966
Asp700I GAANNNNTTC 5 cut(s) 72, 558, 888, 942, 1265
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 2 cut(s) 836, 1177
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 3 cut(s) 149, 232, 518
AvaI CYCGRG 1 cut(s) 768
AvaII GGWCC 1 cut(s) 1177
AxyI CCTNAGG 1 cut(s) 1254
BaeGI GKGCMC 1 cut(s) 117
BalI TGGCCA 1 cut(s) 42
BanI GGYRCC 2 cut(s) 299, 652
BbsI GAAGAC 2 cut(s) 480, 891
BbvI GCAGC 5 cut(s) 688, 722, 830, 861, 992
BccI CCATC 6 cut(s) 13, 581, 664, 694, 1043, 1108
BceAI ACGGC 1 cut(s) 424
BciT130I CCWGG 2 cut(s) 39, 304
BclI TGATCA 1 cut(s) 439
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 447
BcuI ACTAGT 1 cut(s) 940
BfaI CTAG 2 cut(s) 719, 941
BisI GCNGC 7 cut(s) 641, 702, 711, 819, 875, 981, 1041
BlsI GCNGC 7 cut(s) 642, 703, 712, 820, 876, 982, 1042
BmcAI AGTACT 1 cut(s) 1186
Bme1390I CCNGG 3 cut(s) 39, 117, 304
Bme18I GGWCC 1 cut(s) 1177
BmeT110I CYCGRG 1 cut(s) 768
BmgT120I GGNCC 2 cut(s) 836, 1177
BmiI GGNNCC 3 cut(s) 301, 654, 1179
BmrFI CCNGG 3 cut(s) 39, 117, 304
BmrI ACTGGG 1 cut(s) 1165
BmsI GCATC 1 cut(s) 688
BmuI ACTGGG 1 cut(s) 1165
BpiI GAAGAC 2 cut(s) 480, 891
BpuEI CTTGAG 3 cut(s) 71, 232, 644
BpuMI CCSGG 1 cut(s) 117
Bsa29I ATCGAT 1 cut(s) 1130
BsaJI CCNNGG 4 cut(s) 57, 167, 822, 1077
Bsc4I CCNNNNNNNGG 1 cut(s) 662
Bse1I ACTGG 3 cut(s) 329, 352, 1160
Bse21I CCTNAGG 1 cut(s) 1254
Bse3DI GCAATG 1 cut(s) 1063
BseBI CCWGG 2 cut(s) 39, 304
BseCI ATCGAT 1 cut(s) 1130
BseDI CCNNGG 4 cut(s) 57, 167, 822, 1077
BseGI GGATG 2 cut(s) 656, 1028
BseLI CCNNNNNNNGG 1 cut(s) 662
BseMI GCAATG 1 cut(s) 1063
BseMII CTCAG 3 cut(s) 463, 774, 1245
BseNI ACTGG 3 cut(s) 329, 352, 1160
BseRI GAGGAG 2 cut(s) 38, 1271
BseSI GKGCMC 1 cut(s) 117
BseXI GCAGC 5 cut(s) 688, 722, 830, 861, 992
BsgI GTGCAG 1 cut(s) 49
Bsh1236I CGCG 2 cut(s) 129, 276
BshFI GGCC 4 cut(s) 42, 185, 837, 1043
BshNI GGYRCC 2 cut(s) 299, 652
BshVI ATCGAT 1 cut(s) 1130
BsiHKCI CYCGRG 1 cut(s) 768
BsiSI CCGG 4 cut(s) 117, 283, 321, 878
BsiWI CGTACG 1 cut(s) 277
BslFI GGGAC 1 cut(s) 1163
BslI CCNNNNNNNGG 1 cut(s) 662
BsmAI GTCTC 1 cut(s) 447
BsmFI GGGAC 1 cut(s) 1163
BsmI GAATGC 2 cut(s) 704, 740
BsnI GGCC 4 cut(s) 42, 185, 837, 1043
BsoBI CYCGRG 1 cut(s) 768
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 8 cut(s) 108, 335, 417, 439, 522, 853, 1096, 1127
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 6 cut(s) 102, 127, 640, 872, 899, 1040
BspANI GGCC 4 cut(s) 42, 185, 837, 1043
BspCNI CTCAG 3 cut(s) 462, 773, 1246
BspDI ATCGAT 1 cut(s) 1130
BspFNI CGCG 2 cut(s) 129, 276
BspHI TCATGA 1 cut(s) 583
BspLI GGNNCC 3 cut(s) 301, 654, 1179
BspPI GGATC 3 cut(s) 425, 1091, 1135
BspT107I GGYRCC 2 cut(s) 299, 652
BsrBI CCGCTC 1 cut(s) 102
BsrDI GCAATG 1 cut(s) 1063
BsrI ACTGG 3 cut(s) 329, 352, 1160
BssECI CCNNGG 4 cut(s) 57, 167, 822, 1077
BssMI GATC 8 cut(s) 108, 335, 417, 439, 522, 853, 1096, 1127
BssT1I CCWWGG 3 cut(s) 57, 167, 1077
Bst2UI CCWGG 2 cut(s) 39, 304
Bst4CI ACNGT 3 cut(s) 155, 1189, 1290
Bst6I CTCTTC 6 cut(s) 83, 527, 543, 549, 609, 717
BstC8I GCNNGC 1 cut(s) 326
BstDEI CTNAG 3 cut(s) 449, 760, 1254
BstDSI CCRYGG 1 cut(s) 57
BstEII GGTNACC 1 cut(s) 155
BstF5I GGATG 2 cut(s) 656, 1028
BstFNI CGCG 2 cut(s) 129, 276
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 8 cut(s) 111, 338, 420, 442, 525, 856, 1099, 1130
BstMAI GTCTC 1 cut(s) 447
BstMBI GATC 8 cut(s) 108, 335, 417, 439, 522, 853, 1096, 1127
BstMWI GCNNNNNNNGC 3 cut(s) 126, 707, 710
BstNI CCWGG 2 cut(s) 39, 304
BstPI GGTNACC 1 cut(s) 155
BstSCI CCNGG 3 cut(s) 37, 115, 302
BstSLI GKGCMC 1 cut(s) 117
BstUI CGCG 2 cut(s) 129, 276
BstV1I GCAGC 5 cut(s) 688, 722, 830, 861, 992
BstV2I GAAGAC 2 cut(s) 480, 891
BstX2I RGATCY 1 cut(s) 417
BstYI RGATCY 1 cut(s) 417
Bsu15I ATCGAT 1 cut(s) 1130
Bsu36I CCTNAGG 1 cut(s) 1254
BsuRI GGCC 4 cut(s) 42, 185, 837, 1043
BsuTUI ATCGAT 1 cut(s) 1130
BtgI CCRYGG 1 cut(s) 57
BtsCI GGATG 2 cut(s) 656, 1028
BtsIMutI CAGTG 1 cut(s) 1282
Cac8I GCNNGC 1 cut(s) 326
CciI TCATGA 1 cut(s) 583
CfoI GCGC 1 cut(s) 276
Cfr13I GGNCC 2 cut(s) 836, 1177
ClaI ATCGAT 1 cut(s) 1130
Csp6I GTAC 4 cut(s) 278, 332, 1153, 1185
CspCI CAANNNNNGTGG 2 cut(s) 192, 227
CviAII CATG 6 cut(s) 58, 94, 584, 857, 931, 1033
CviQI GTAC 4 cut(s) 278, 332, 1153, 1185
DdeI CTNAG 3 cut(s) 449, 760, 1254
DpnI GATC 8 cut(s) 110, 337, 419, 441, 524, 855, 1098, 1129
DpnII GATC 8 cut(s) 108, 335, 417, 439, 522, 853, 1096, 1127
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 6 cut(s) 83, 527, 543, 549, 609, 717
EarI CTCTTC 6 cut(s) 83, 527, 543, 549, 609, 717
EciI GGCGGA 1 cut(s) 914
Eco130I CCWWGG 3 cut(s) 57, 167, 1077
Eco147I AGGCCT 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 1177
Eco57I CTGAAG 1 cut(s) 1005
Eco81I CCTNAGG 1 cut(s) 1254
Eco88I CYCGRG 1 cut(s) 768
Eco91I GGTNACC 1 cut(s) 155
EcoO109I RGGNCCY 2 cut(s) 836, 1177
EcoO65I GGTNACC 1 cut(s) 155
EcoRII CCWGG 2 cut(s) 37, 302
EcoT14I CCWWGG 3 cut(s) 57, 167, 1077
ErhI CCWWGG 3 cut(s) 57, 167, 1077
FaeI CATG 6 cut(s) 61, 97, 587, 860, 934, 1036
FalI AAGNNNNNCTT 6 cut(s) 364, 396, 546, 578, 606, 638
FaqI GGGAC 1 cut(s) 1163
FatI CATG 6 cut(s) 57, 93, 583, 856, 930, 1032
FbaI TGATCA 1 cut(s) 439
FblI GTMKAC 2 cut(s) 490, 849
Fnu4HI GCNGC 7 cut(s) 641, 702, 711, 819, 875, 981, 1041
FokI GGATG 2 cut(s) 643, 1015
Fsp4HI GCNGC 7 cut(s) 641, 702, 711, 819, 875, 981, 1041
FspBI CTAG 2 cut(s) 719, 941
GlaI GCGC 1 cut(s) 275
GluI GCNGC 7 cut(s) 641, 702, 711, 819, 875, 981, 1041
HaeIII GGCC 4 cut(s) 42, 185, 837, 1043
HapII CCGG 4 cut(s) 117, 283, 321, 878
HhaI GCGC 1 cut(s) 276
Hin1II CATG 6 cut(s) 61, 97, 587, 860, 934, 1036
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HinfI GANTC 6 cut(s) 317, 395, 725, 804, 1163, 1235
HpaII CCGG 4 cut(s) 117, 283, 321, 878
HphI GGTGA 3 cut(s) 149, 232, 518
Hpy166II GTNNAC 7 cut(s) 403, 491, 509, 803, 850, 928, 1153
Hpy188I TCNGA 5 cut(s) 18, 452, 691, 763, 1225
Hpy188III TCNNGA 6 cut(s) 190, 563, 584, 1104, 1142, 1253
Hpy8I GTNNAC 7 cut(s) 403, 491, 509, 803, 850, 928, 1153
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 3 cut(s) 196, 301, 1019
HpyCH4III ACNGT 3 cut(s) 155, 1189, 1290
HpyCH4IV ACGT 2 cut(s) 544, 993
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 707, 710
HpyF3I CTNAG 3 cut(s) 449, 760, 1254
HpySE526I ACGT 2 cut(s) 544, 993
Hsp92II CATG 6 cut(s) 61, 97, 587, 860, 934, 1036
HspAI GCGC 1 cut(s) 274
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 8 cut(s) 108, 335, 417, 439, 522, 853, 1096, 1127
LmnI GCTCC 2 cut(s) 607, 1024
Lsp1109I GCAGC 5 cut(s) 688, 722, 830, 861, 992
LweI GCATC 1 cut(s) 688
MaeI CTAG 2 cut(s) 719, 941
MaeII ACGT 2 cut(s) 544, 993
MaeIII GTNAC 1 cut(s) 155
MalI GATC 8 cut(s) 110, 337, 419, 441, 524, 855, 1098, 1129
MbiI CCGCTC 1 cut(s) 102
MboI GATC 8 cut(s) 108, 335, 417, 439, 522, 853, 1096, 1127
MfeI CAATTG 1 cut(s) 774
MflI RGATCY 1 cut(s) 417
MhlI GDGCHC 1 cut(s) 117
MlsI TGGCCA 1 cut(s) 42
MluCI AATT 5 cut(s) 11, 571, 774, 812, 1243
MluNI TGGCCA 1 cut(s) 42
MlyI GAGTC 6 cut(s) 311, 389, 734, 798, 1172, 1244
MmeI TCCRAC 4 cut(s) 271, 395, 832, 1212
Mox20I TGGCCA 1 cut(s) 42
MroXI GAANNNNTTC 5 cut(s) 72, 558, 888, 942, 1265
MscI TGGCCA 1 cut(s) 42
MseI TTAA 3 cut(s) 867, 951, 966
MslI CAYNNNNRTG 1 cut(s) 733
Msp20I TGGCCA 1 cut(s) 42
MspA1I CMGCKG 4 cut(s) 713, 874, 983, 1208
MspI CCGG 4 cut(s) 117, 283, 321, 878
MspR9I CCNGG 3 cut(s) 39, 117, 304
MunI CAATTG 1 cut(s) 774
Mva1269I GAATGC 2 cut(s) 704, 740
MvaI CCWGG 2 cut(s) 39, 304
MvnI CGCG 2 cut(s) 129, 276
MwoI GCNNNNNNNGC 3 cut(s) 126, 707, 710
NciI CCSGG 1 cut(s) 117
NcoI CCATGG 1 cut(s) 57
NdeII GATC 8 cut(s) 108, 335, 417, 439, 522, 853, 1096, 1127
NlaIII CATG 6 cut(s) 61, 97, 587, 860, 934, 1036
NlaIV GGNNCC 3 cut(s) 301, 654, 1179
NmeAIII GCCGAG 1 cut(s) 847
NmuCI GTSAC 1 cut(s) 155
PaeR7I CTCGAG 1 cut(s) 768
PagI TCATGA 1 cut(s) 583
PceI AGGCCT 1 cut(s) 185
PctI GAATGC 2 cut(s) 704, 740
PdmI GAANNNNTTC 5 cut(s) 72, 558, 888, 942, 1265
Pfl23II CGTACG 1 cut(s) 277
PflMI CCANNNNNTGG 1 cut(s) 662
PkrI GCNGC 7 cut(s) 642, 703, 712, 820, 876, 982, 1042
PleI GAGTC 6 cut(s) 311, 389, 733, 798, 1171, 1243
PpsI GAGTC 6 cut(s) 311, 389, 733, 798, 1171, 1243
PpuMI RGGWCCY 1 cut(s) 1177
PshBI ATTAAT 2 cut(s) 951, 966
Psp5II RGGWCCY 1 cut(s) 1177
Psp6I CCWGG 2 cut(s) 37, 302
PspEI GGTNACC 1 cut(s) 155
PspGI CCWGG 2 cut(s) 37, 302
PspLI CGTACG 1 cut(s) 277
PspN4I GGNNCC 3 cut(s) 301, 654, 1179
PspPI GGNCC 2 cut(s) 836, 1177
PspPPI RGGWCCY 1 cut(s) 1177
PspXI VCTCGAGB 1 cut(s) 768
PsuI RGATCY 1 cut(s) 417
PvuII CAGCTG 3 cut(s) 713, 983, 1208
RsaI GTAC 4 cut(s) 279, 333, 1154, 1186
RsaNI GTAC 4 cut(s) 278, 332, 1153, 1185
RseI CAYNNNNRTG 1 cut(s) 733
SaqAI TTAA 3 cut(s) 867, 951, 966
SatI GCNGC 7 cut(s) 641, 702, 711, 819, 875, 981, 1041
Sau3AI GATC 8 cut(s) 108, 335, 417, 439, 522, 853, 1096, 1127
Sau96I GGNCC 2 cut(s) 836, 1177
ScaI AGTACT 1 cut(s) 1186
SchI GAGTC 6 cut(s) 311, 389, 734, 798, 1172, 1244
ScrFI CCNGG 3 cut(s) 39, 117, 304
SduI GDGCHC 1 cut(s) 117
SfaNI GCATC 1 cut(s) 688
Sfr274I CTCGAG 1 cut(s) 768
SinI GGWCC 1 cut(s) 1177
SlaI CTCGAG 1 cut(s) 768
SmiMI CAYNNNNRTG 1 cut(s) 733
SmlI CTYRAG 4 cut(s) 86, 211, 623, 768
SmoI CTYRAG 4 cut(s) 86, 211, 623, 768
SpeI ACTAGT 1 cut(s) 940
Sse9I AATT 5 cut(s) 11, 571, 774, 812, 1243
SseBI AGGCCT 1 cut(s) 185
SsiI CCGC 6 cut(s) 102, 127, 640, 872, 899, 1040
SspI AATATT 1 cut(s) 864
SspMI CTAG 2 cut(s) 719, 941
StuI AGGCCT 1 cut(s) 185
StyD4I CCNGG 3 cut(s) 37, 115, 302
StyI CCWWGG 3 cut(s) 57, 167, 1077
TaaI ACNGT 3 cut(s) 155, 1189, 1290
TaiI ACGT 2 cut(s) 547, 996
TaqI TCGA 5 cut(s) 138, 525, 599, 769, 1130
TasI AATT 5 cut(s) 11, 571, 774, 812, 1243
TatI WGTACW 2 cut(s) 1152, 1184
TauI GCSGC 2 cut(s) 643, 1043
Tru1I TTAA 3 cut(s) 867, 951, 966
Tru9I TTAA 3 cut(s) 867, 951, 966
TscAI CASTG 1 cut(s) 1282
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 5 cut(s) 701, 710, 818, 874, 980
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 3 cut(s) 81, 572, 1227
TspRI CASTG 1 cut(s) 1282
Van91I CCANNNNNTGG 1 cut(s) 662
VpaK11BI GGWCC 1 cut(s) 1177
VspI ATTAAT 2 cut(s) 951, 966
XapI RAATTY 1 cut(s) 11
XhoI CTCGAG 1 cut(s) 768
XmiI GTMKAC 2 cut(s) 490, 849
XmnI GAANNNNTTC 5 cut(s) 72, 558, 888, 942, 1265
XspI CTAG 2 cut(s) 719, 941
ZrmI AGTACT 1 cut(s) 1186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.