Rmu_sc0001571.1_g000004
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001571.1
Physical Location & Seq
Forward (+)
27664 .. 28431
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001571.1_g000004.1.cds

Sequence Viewer

Length: 768 bp
atggcagttcacgatgatcctcctccggggtacaggtttaggcctgacacagaacaactacttgttcattatcttcgtcccatactcgacggagaagactttccccaagggcttgtccctttctgcgatctctatggagaacaagaaccatggcagatatgggatgctttcaaagaattatgtgagaaagaccaaggaagaacagacctctacttcattacccaacacaagacgaagaccccaaagggaaagcgcataagcagaacagtcggccgcggcacctggaaaggagatgacgccccagggaaagtactttcggcttctcaaagggttattggcaggagaaaaagattccattacaagaacgatggctcgacacaaaacggtcgctggctcatgcacgagtttgaacttgatacatctttactgcgaaacaaacgtaaagcgaaggactatgttctttgtattcttagaaagaataatagatcggtgaaaaagaattcagaaggacaagagggtcaagaagaagatgagatgagttgggacggtggggatgatcaacaagatggagaccttcctgaacctgagtttgttgaagaagaaaccactacaactcaaagaccagacgaacttcgaaaatatgtgatggagtttgaggtatacctaaagaaacagactgctgaccaggctgtgaaaaggaaagatcataaagattcacataaaatgagcttagaagatatagagaaccacctgatgagtgatgactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

255

Amino Acids

29.89

Weight (kDa)

5.59

Isoelectric Point (pI)

62.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53610 AT1G53620
fragaria_vesca FvH4_3g16890 FvH4_3g16900 FvH4_3g16910 FvH4_3g17012 FvH4_3g18170 FvH4_3g18460 FvH4_3g18930 FvH4_3g18940 FvH4_3g25560 FvH4_4g12410 FvH4_5g05980 FvH4_5g24860 FvH4_5g25360 FvH4_5g25510 FvH4_5g27470 FvH4_5g27620 FvH4_5g27760 FvH4_5g29460 FvH4_6g04191 FvH4_6g39190 FvH4_6g39200 FvH4_6g39580 FvH4_6g39600 FvH4_7g11470
malus_domestica MD00G1154700.v1.1 MD00G1154800.v1.1 MD00G1155000.v1.1 MD03G1255000.v1.1 MD03G1255100.v1.1 MD03G1255200.v1.1 MD03G1255300.v1.1 MD06G1030300.v1.1 MD11G1219300.v1.1 MD11G1264900.v1.1
prunus_persica Prupe.1G575600_v2.0.a1 Prupe.3G065000_v2.0.a1 Prupe.3G111400_v2.0.a1 Prupe.4G151300_v2.0.a1 Prupe.4G151900_v2.0.a1 Prupe.4G153700_v2.0.a1 Prupe.4G154000_v2.0.a1 Prupe.4G230600_v2.0.a1 Prupe.4G230900_v2.0.a1 Prupe.4G231000_v2.0.a1 Prupe.4G246100_v2.0.a1 Prupe.4G255500_v2.0.a1 Prupe.6G133600_v2.0.a1 Prupe.6G134000_v2.0.a1 Prupe.I005300_v2.0.a1
pyrus_communis pycom03g14030 pycom03g15340
rosa_chinensis RchiOBHm_Chr3g0452871 RchiOBHm_Chr5g0056721 RchiOBHm_Chr6g0271921 RchiOBHm_Chr7g0211251 RchiOBHm_Chr7g0231191
rosa_laevigata RLG00000000989 RLG00000001070 RLG00000001076 RLG00000001103 RLG00000001116 RLG00000001118 RLG00000001936 RLG00000001949 RLG00000002610 RLG00000002710 RLG00000003013 RLG00000013562 RLG00000013567 RLG00000018805 RLG00000020667 RLG00000020716 RLG00000020717 RLG00000025564 RLG00000028522 RLG00000030016 RLG00000033070 RLG00000033077 RLG00000033081 RLG00000033086 RLG00000033235 RLG00000033291 RLG00000033337 RLG00000033338 RLG00000033340 RLG00000033345 RLG00000033346 RLG00000033874 RLG00000033885 RLG00000034356 RLG00000034411 RLG00000034414
rosa_multiflora Rmu_co8273153.1_g000001 Rmu_co8288493.1_g000001 Rmu_co8293081.1_g000001 Rmu_co8429197.1_g000001 Rmu_sc0000055.1_g000007 Rmu_sc0000218.1_g000011 Rmu_sc0000533.1_g000061 Rmu_sc0000755.1_g000007 Rmu_sc0000758.1_g000005 Rmu_sc0000898.1_g000011 Rmu_sc0000898.1_g000025 Rmu_sc0001561.1_g000008 Rmu_sc0001571.1_g000004 Rmu_sc0002292.1_g000005 Rmu_sc0002292.1_g000006 Rmu_sc0002308.1_g000010 Rmu_sc0002449.1_g000010 Rmu_sc0002449.1_g000011 Rmu_sc0002536.1_g000004 Rmu_sc0002536.1_g000005 Rmu_sc0002536.1_g000015 Rmu_sc0003238.1_g000014 Rmu_sc0003545.1_g000015 Rmu_sc0003720.1_g000009 Rmu_sc0003878.1_g000040 Rmu_sc0003878.1_g000041 Rmu_sc0003878.1_g000047 Rmu_sc0003878.1_g000048 Rmu_sc0003972.1_g000001 Rmu_sc0004322.1_g000008 Rmu_sc0004379.1_g000014 Rmu_sc0005478.1_g000002 Rmu_sc0006240.1_g000008 Rmu_sc0006847.1_g000022 Rmu_sc0007753.1_g000022 Rmu_sc0007782.1_g000001 Rmu_sc0008328.1_g000002 Rmu_sc0008526.1_g000005 Rmu_sc0008835.1_g000013 Rmu_sc0014005.1_g000009 Rmu_sc0014478.1_g000004 Rmu_sc0015060.1_g000021 Rmu_sc0016364.1_g000001 Rmu_sc0016727.1_g000004 Rmu_sc0020600.1_g000008 Rmu_sc0022743.1_g000003 Rmu_sc0032116.1_g000002 Rmu_sc0033519.1_g000005 Rmu_sc0042823.1_g000001 Rmu_ssc0000134.1_g000011
rosa_roxburghii Rroxscaffold_1G00029360 Rroxscaffold_1G00034880 Rroxscaffold_1G00034930 Rroxscaffold_1G00034970 Rroxscaffold_1G00042100 Rroxscaffold_1G00049130 Rroxscaffold_1G00049660 Rroxscaffold_1G00051410 Rroxscaffold_2G00094840 Rroxscaffold_2G00094850 Rroxscaffold_2G00095300 Rroxscaffold_3G00224990 Rroxscaffold_3G00225050 Rroxscaffold_3G00225080 Rroxscaffold_3G00225360 Rroxscaffold_3G00235370 Rroxscaffold_3G00243820 Rroxscaffold_3G00243860 Rroxscaffold_3G00243920 Rroxscaffold_3G00244920 Rroxscaffold_4G00305330 Rroxscaffold_5G00373100 Rroxscaffold_6G00407840 Rroxscaffold_6G00422000 Rroxscaffold_6G00429880 Rroxscaffold_7G00186180
rosa_rugosa Rorug01G0120600 Rorug01G0127200 Rorug01G0128500 Rorug01G0206000 Rorug02G0251400 Rorug02G0420800 Rorug02G0436800 Rorug02G0441000 Rorug02G0643100 Rorug03G0339200 Rorug04G0168000 Rorug04G0168100 Rorug05G0104500 Rorug05G0105300 Rorug05G0105700 Rorug05G0105800 Rorug05G0118900 Rorug05G0175700 Rorug05G0228200 Rorug05G0229000 Rorug05G0229500 Rorug06G0064300 Rorug07G0124700 Rorug07G0156100 Rorug07G0156700 Rorug07G0158100 Rorug07G0219600 Rorug07G0273400 Rorug07G0291800 Rorug07G0294300 Rorug07G0297400 Rorug07G0297800
rosa_samantha Rh1BG189400 Rh1CG103600 Rh1CG142100 Rh1CG208100 Rh1DG209200 Rh2CG296600 Rh2CG301600 Rh2CG485100 Rh2CG489800 Rh2CG490000 Rh2DG333700 Rh2DG526600 Rh2DG526800 Rh3BG048500 Rh3CG047100 Rh3DG048100 Rh5AG198800 Rh5AG211300 Rh5AG213900 Rh5AG217700 Rh5AG221800 Rh5AG225800 Rh5AG262500 Rh5AG309600 Rh5BG210200 Rh5CG216300 Rh5CG217100 Rh5CG217500 Rh5CG233900 Rh5CG236800 Rh5CG239600 Rh5CG241200 Rh5CG244900 Rh5CG245100 Rh5CG254600 Rh5CG299700 Rh5CG343400 Rh5CG343600 Rh5CG406800 Rh5DG215100 Rh5DG215200 Rh5DG220900 Rh5DG222800 Rh5DG226600 Rh5DG226700 Rh5DG226800 Rh5DG231600 Rh5DG273600 Rh5DG327700 Rh5DG328300 Rh6BG185200 Rh6DG174700 Rh7AG257100 Rh7AG285100 Rh7AG293000 Rh7AG294700 Rh7AG296700 Rh7AG297200 Rh7AG298400 Rh7AG306700 Rh7AG362600 Rh7AG379100 Rh7AG449400 Rh7AG451800 Rh7AG453400 Rh7AG453500 Rh7AG459000 Rh7BG251000 Rh7BG275900 Rh7BG276100 Rh7BG276800 Rh7BG285400 Rh7BG353800 Rh7BG400900 Rh7BG418600 Rh7BG421100 Rh7BG424000 Rh7BG424300 Rh7BG424400 Rh7DG288700
rosa_wichuraiana Rw0G000390 Rw0G010750 Rw0G015930 Rw0G020680 Rw0G023760 Rw1G008930 Rw1G012360 Rw1G019040 Rw2G025060 Rw2G041400 Rw2G041420 Rw3G003610 Rw5G018050 Rw5G018130 Rw5G019340 Rw5G019550 Rw5G020700 Rw5G024510 Rw5G036060 Rw6G015630 Rw7G021960 Rw7G024340 Rw7G024900 Rw7G024940 Rw7G025030 Rw7G025280 Rw7G030800 Rw7G032090 Rw7G037610 Rw7G038010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 516
AccB1I GGYRCC 1 cut(s) 278
AccI GTMKAC 1 cut(s) 660
AccII CGCG 1 cut(s) 276
AciI CCGC 2 cut(s) 274, 276
AclWI GGATC 1 cut(s) 11
AcoI YGGCCR 1 cut(s) 271
AcsI RAATTY 1 cut(s) 499
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 2 cut(s) 32, 312
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 3 cut(s) 172, 410, 596
AjnI CCWGG 3 cut(s) 281, 301, 684
AluBI AGCT 1 cut(s) 729
AluI AGCT 1 cut(s) 729
Alw26I GTCTC 1 cut(s) 564
AlwI GGATC 1 cut(s) 11
AoxI GGCC 2 cut(s) 41, 271
ApoI RAATTY 1 cut(s) 499
Asp700I GAANNNNTTC 1 cut(s) 99
AspLEI GCGC 1 cut(s) 255
AsuC2I CCSGG 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 502
AsuII TTCGAA 1 cut(s) 634
BanI GGYRCC 1 cut(s) 278
BauI CACGAG 1 cut(s) 401
BbsI GAAGAC 2 cut(s) 102, 242
BccI CCATC 3 cut(s) 362, 560, 640
BcgI CGANNNNNNTGC 2 cut(s) 250, 284
BciT130I CCWGG 3 cut(s) 283, 303, 686
BclI TGATCA 1 cut(s) 556
BcnI CCSGG 1 cut(s) 27
BcoDI GTCTC 1 cut(s) 564
BisI GCNGC 2 cut(s) 274, 277
BlsI GCNGC 2 cut(s) 275, 278
BmcAI AGTACT 1 cut(s) 312
Bme1390I CCNGG 4 cut(s) 27, 283, 303, 686
BmiI GGNNCC 1 cut(s) 280
BmrFI CCNGG 4 cut(s) 27, 283, 303, 686
BmsI GCATC 1 cut(s) 154
BpiI GAAGAC 2 cut(s) 102, 242
Bpu14I TTCGAA 1 cut(s) 634
BpuMI CCSGG 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 564
BsaJI CCNNGG 7 cut(s) 26, 106, 149, 193, 274, 301, 302
Bsc4I CCNNNNNNNGG 1 cut(s) 26
BseBI CCWGG 3 cut(s) 283, 303, 686
BseDI CCNNGG 7 cut(s) 26, 106, 149, 193, 274, 301, 302
BseGI GGATG 2 cut(s) 169, 559
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMII CTCAG 1 cut(s) 576
BseRI GAGGAG 1 cut(s) 12
BseX3I CGGCCG 1 cut(s) 271
Bsh1236I CGCG 1 cut(s) 276
Bsh1285I CGRYCG 2 cut(s) 274, 388
BshFI GGCC 2 cut(s) 43, 273
BshNI GGYRCC 1 cut(s) 278
BsiEI CGRYCG 2 cut(s) 274, 388
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 3 cut(s) 63, 101, 557
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 564
BsmFI GGGAC 3 cut(s) 63, 101, 557
BsnI GGCC 2 cut(s) 43, 273
Bso31I GGTCTC 1 cut(s) 564
Bsp119I TTCGAA 1 cut(s) 634
Bsp143I GATC 5 cut(s) 16, 127, 485, 556, 703
Bsp19I CCATGG 1 cut(s) 149
BspACI CCGC 2 cut(s) 274, 276
BspANI GGCC 2 cut(s) 43, 273
BspCNI CTCAG 1 cut(s) 577
BspFNI CGCG 1 cut(s) 276
BspLI GGNNCC 1 cut(s) 280
BspPI GGATC 1 cut(s) 11
BspT104I TTCGAA 1 cut(s) 634
BspT107I GGYRCC 1 cut(s) 278
BspTNI GGTCTC 1 cut(s) 564
BssECI CCNNGG 7 cut(s) 26, 106, 149, 193, 274, 301, 302
BssMI GATC 5 cut(s) 16, 127, 485, 556, 703
BssNAI GTATAC 1 cut(s) 661
BssNI GRCGYC 1 cut(s) 297
BssSI CACGAG 1 cut(s) 401
BssT1I CCWWGG 3 cut(s) 106, 149, 193
Bst1107I GTATAC 1 cut(s) 661
Bst2BI CACGAG 1 cut(s) 401
Bst2UI CCWGG 3 cut(s) 283, 303, 686
Bst4CI ACNGT 3 cut(s) 268, 386, 548
BstACI GRCGYC 1 cut(s) 297
BstBI TTCGAA 1 cut(s) 634
BstC8I GCNNGC 1 cut(s) 392
BstDEI CTNAG 3 cut(s) 470, 585, 730
BstDSI CCRYGG 2 cut(s) 149, 274
BstF5I GGATG 2 cut(s) 169, 559
BstFNI CGCG 1 cut(s) 276
BstHHI GCGC 1 cut(s) 255
BstKTI GATC 5 cut(s) 19, 130, 488, 559, 706
BstMAI GTCTC 1 cut(s) 564
BstMBI GATC 5 cut(s) 16, 127, 485, 556, 703
BstMCI CGRYCG 2 cut(s) 274, 388
BstMWI GCNNNNNNNGC 1 cut(s) 686
BstNI CCWGG 3 cut(s) 283, 303, 686
BstSCI CCNGG 4 cut(s) 25, 281, 301, 684
BstUI CGCG 1 cut(s) 276
BstV2I GAAGAC 2 cut(s) 102, 242
BstZ17I GTATAC 1 cut(s) 661
BstZI CGGCCG 1 cut(s) 271
BsuRI GGCC 2 cut(s) 43, 273
BtgI CCRYGG 2 cut(s) 149, 274
BtsCI GGATG 2 cut(s) 169, 559
Cac8I GCNNGC 1 cut(s) 392
CfoI GCGC 1 cut(s) 255
Cfr42I CCGCGG 1 cut(s) 277
CseI GACGC 1 cut(s) 305
Csp6I GTAC 2 cut(s) 31, 311
CviAII CATG 2 cut(s) 150, 397
CviJI RGCY 8 cut(s) 43, 112, 273, 320, 372, 394, 689, 729
CviKI_1 RGCY 8 cut(s) 43, 112, 273, 320, 372, 394, 689, 729
CviQI GTAC 2 cut(s) 31, 311
DdeI CTNAG 3 cut(s) 470, 585, 730
DpnI GATC 5 cut(s) 18, 129, 487, 558, 705
DpnII GATC 5 cut(s) 16, 127, 485, 556, 703
DrdI GACNNNNNNGTC 1 cut(s) 516
DseDI GACNNNNNNGTC 1 cut(s) 516
EaeI YGGCCR 1 cut(s) 271
EagI CGGCCG 1 cut(s) 271
EclXI CGGCCG 1 cut(s) 271
Eco130I CCWWGG 3 cut(s) 106, 149, 193
Eco147I AGGCCT 1 cut(s) 43
Eco31I GGTCTC 1 cut(s) 564
Eco52I CGGCCG 1 cut(s) 271
EcoRI GAATTC 1 cut(s) 499
EcoRII CCWGG 3 cut(s) 281, 301, 684
EcoT14I CCWWGG 3 cut(s) 106, 149, 193
ErhI CCWWGG 3 cut(s) 106, 149, 193
FaeI CATG 2 cut(s) 153, 400
FaqI GGGAC 3 cut(s) 63, 101, 557
FatI CATG 2 cut(s) 149, 396
FbaI TGATCA 1 cut(s) 556
FblI GTMKAC 1 cut(s) 660
Fnu4HI GCNGC 2 cut(s) 274, 277
FokI GGATG 2 cut(s) 176, 566
Fsp4HI GCNGC 2 cut(s) 274, 277
GlaI GCGC 1 cut(s) 254
GluI GCNGC 2 cut(s) 274, 277
HaeIII GGCC 2 cut(s) 43, 273
HapII CCGG 1 cut(s) 26
HgaI GACGC 1 cut(s) 305
HhaI GCGC 1 cut(s) 255
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 2 cut(s) 153, 400
Hin6I GCGC 1 cut(s) 253
HinP1I GCGC 1 cut(s) 253
HinfI GANTC 2 cut(s) 351, 713
HpaII CCGG 1 cut(s) 26
HphI GGTGA 1 cut(s) 502
Hpy166II GTNNAC 2 cut(s) 10, 661
Hpy188I TCNGA 1 cut(s) 505
Hpy188III TCNNGA 3 cut(s) 11, 521, 578
Hpy8I GTNNAC 2 cut(s) 10, 661
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 3 cut(s) 442, 500, 584
HpyCH4III ACNGT 3 cut(s) 268, 386, 548
HpyCH4IV ACGT 1 cut(s) 439
HpyCH4V TGCA 1 cut(s) 400
HpyF10VI GCNNNNNNNGC 1 cut(s) 686
HpyF3I CTNAG 3 cut(s) 470, 585, 730
HpySE526I ACGT 1 cut(s) 439
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 2 cut(s) 153, 400
HspAI GCGC 1 cut(s) 253
Ksp22I TGATCA 1 cut(s) 556
KspI CCGCGG 1 cut(s) 277
Kzo9I GATC 5 cut(s) 16, 127, 485, 556, 703
LweI GCATC 1 cut(s) 154
MaeII ACGT 1 cut(s) 439
MalI GATC 5 cut(s) 18, 129, 487, 558, 705
MboI GATC 5 cut(s) 16, 127, 485, 556, 703
MboII GAAGA 9 cut(s) 65, 107, 210, 247, 536, 539, 608, 611, 746
MluCI AATT 2 cut(s) 176, 499
MnlI CCTC 5 cut(s) 30, 33, 218, 508, 649
MroXI GAANNNNTTC 1 cut(s) 99
MspA1I CMGCKG 1 cut(s) 276
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 4 cut(s) 27, 283, 303, 686
MvaI CCWGG 3 cut(s) 283, 303, 686
MvnI CGCG 1 cut(s) 276
MwoI GCNNNNNNNGC 1 cut(s) 686
NciI CCSGG 1 cut(s) 27
NcoI CCATGG 1 cut(s) 149
NdeII GATC 5 cut(s) 16, 127, 485, 556, 703
NlaIII CATG 2 cut(s) 153, 400
NlaIV GGNNCC 1 cut(s) 280
NspV TTCGAA 1 cut(s) 634
PasI CCCWGGG 1 cut(s) 302
PceI AGGCCT 1 cut(s) 43
PdmI GAANNNNTTC 1 cut(s) 99
PfeI GAWTC 2 cut(s) 351, 713
PkrI GCNGC 2 cut(s) 275, 278
Psp6I CCWGG 3 cut(s) 281, 301, 684
PspGI CCWGG 3 cut(s) 281, 301, 684
PspN4I GGNNCC 1 cut(s) 280
RsaI GTAC 2 cut(s) 32, 312
RsaNI GTAC 2 cut(s) 31, 311
SacII CCGCGG 1 cut(s) 277
SatI GCNGC 2 cut(s) 274, 277
Sau3AI GATC 5 cut(s) 16, 127, 485, 556, 703
ScaI AGTACT 1 cut(s) 312
ScrFI CCNGG 4 cut(s) 27, 283, 303, 686
SfaNI GCATC 1 cut(s) 154
Sfr303I CCGCGG 1 cut(s) 277
SfuI TTCGAA 1 cut(s) 634
SgrBI CCGCGG 1 cut(s) 277
Sse9I AATT 2 cut(s) 176, 499
SseBI AGGCCT 1 cut(s) 43
SsiI CCGC 2 cut(s) 274, 276
StuI AGGCCT 1 cut(s) 43
StyD4I CCNGG 4 cut(s) 25, 281, 301, 684
StyI CCWWGG 3 cut(s) 106, 149, 193
TaaI ACNGT 3 cut(s) 268, 386, 548
TaiI ACGT 1 cut(s) 442
TaqI TCGA 3 cut(s) 87, 374, 634
TasI AATT 2 cut(s) 176, 499
TatI WGTACW 1 cut(s) 310
TauI GCSGC 2 cut(s) 276, 279
TfiI GAWTC 2 cut(s) 351, 713
TspDTI ATGAA 2 cut(s) 56, 205
TspGWI ACGGA 1 cut(s) 105
XapI RAATTY 1 cut(s) 499
XcmI CCANNNNNNNNNTGG 1 cut(s) 156
XmiI GTMKAC 1 cut(s) 660
XmnI GAANNNNTTC 1 cut(s) 99
ZrmI AGTACT 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.