Rh5DG215200
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000076
Physical Location & Seq
Reverse (-)
24334499 .. 24336764
2266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG215200.1

Sequence Viewer

Length: 1401 bp
ATGGATATCCATGAGGATGGTAATGAAATATTACATGACAAGCATCATCTTCTTCCGGGCTACAGGTTCTGTCCCTTGGAGGAGGAACTAATCCTCCGCTATCTATGTCCCAAGGTCAAAGGAGAAGAGGTACCCGGTGAAGACTATTTGATTTTCAACTCCAATTTGTACGGTGAACAAGAGCCCTGGGACATATGGGACATGTACGAAGAAAGACGAAAGAACGACTTGAGGTTCAACAAAGATCTCTACTTCTTCACTCAACGAAAGAAGATGACTGTGAATGCCTCCCGGAAGGGCCGATCTATCGGAAGCGGCACCTGGAAAGGGGGGGACGCTGCCAAGAACGTATACGCAAGTGGCATTGTTGTAGGTTACAGGAAAAGATTTACTTATGAGAAAAAGGGGTCTGAGCAACATGGCAGATGGATCATGCTCGAGTTCGAACTTGATCACTCGCAAGTAGGCATGCTTGACGAACAAGAGGCACAAAAATATGTTCTATGCATCCTTAGGAAAAATGAGGGATCCAAAGAGAAAAGGAAACGGGTTGATGATGATGACCGGGAGAAGCTTGCAACCGGAGATGATGTCCCCGATGATTGTGAAGCACTGGATGGATATAAGAATGTGAAACAAGAGGAATCCGAAATTAAACAAGGAGAGGAAGATCAACTTATGCATGCAATTACCGGAGATGTCCGCGATGCTGGTCCATCATTATCTTCTGAACTGCAAGGGGAAGAAAACTGTTGGGTGCAATACCTGAGCCCTATACTATTAGTTCACGATGACAATGTGCTGCCACCATATGCAGATGCCTTGCAGTGGGAAGAAGAAAATTATTTGGGTAAACAATCCATTGTGCCAGGCTTCGAGGACAATGTGCAACCATTTCTAGTAGCTGATCATGAACTGCAAAGGAAAGCAGAAAATTGCGGAAGGCAATGCCTAGAACATAGGCCATTGGTGCCACCATTTACAGCTGATTGCGAAATAATGATCCACATGCTAGGGGTAGAGAATTATTTGTCGAAACAGTGCCCTGTGCAATGCATCTACTGTGACTTTGACGTACAACCATTTGCAGCAGCTAACGAACTGAGTAATATCTACATGTTGGGGGAAGAGCATCCTGTACCAAGAGTAGCTGAACAAGAGGGTAGTAGCTTGAAAGAGAAACAAAATGCAAGCATGGTCAGTACTTCAACTGATCATCAGCCTGACATGGTTGCCTCGAAAAGTACTTCAACTGATCATCATCGAGCTGATGATCCTATAGGAAGCAACGATGTTGATGAAGGGTTGGCTGCAGGTACTCATGGTTTCAAATATAACCCTTGGATACTATCTTTTTCAGAGGAGCTGCTACGTGGGGCTCGATCAAAATCTAAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

466

Amino Acids

53.24

Weight (kDa)

4.9

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 19 - 150 1.6e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53610 AT1G53620
fragaria_vesca FvH4_3g16890 FvH4_3g16900 FvH4_3g16910 FvH4_3g17012 FvH4_3g18170 FvH4_3g18460 FvH4_3g18930 FvH4_3g18940 FvH4_3g25560 FvH4_4g12410 FvH4_5g05980 FvH4_5g24860 FvH4_5g25360 FvH4_5g25510 FvH4_5g27470 FvH4_5g27620 FvH4_5g27760 FvH4_5g29460 FvH4_6g04191 FvH4_6g39190 FvH4_6g39200 FvH4_6g39580 FvH4_6g39600 FvH4_7g11470
malus_domestica MD00G1154700.v1.1 MD00G1154800.v1.1 MD00G1155000.v1.1 MD03G1255000.v1.1 MD03G1255100.v1.1 MD03G1255200.v1.1 MD03G1255300.v1.1 MD06G1030300.v1.1 MD11G1219300.v1.1 MD11G1264900.v1.1
prunus_persica Prupe.1G575600_v2.0.a1 Prupe.3G065000_v2.0.a1 Prupe.3G111400_v2.0.a1 Prupe.4G151300_v2.0.a1 Prupe.4G151900_v2.0.a1 Prupe.4G153700_v2.0.a1 Prupe.4G154000_v2.0.a1 Prupe.4G230600_v2.0.a1 Prupe.4G230900_v2.0.a1 Prupe.4G231000_v2.0.a1 Prupe.4G246100_v2.0.a1 Prupe.4G255500_v2.0.a1 Prupe.6G133600_v2.0.a1 Prupe.6G134000_v2.0.a1 Prupe.I005300_v2.0.a1
pyrus_communis pycom03g14030 pycom03g15340
rosa_chinensis RchiOBHm_Chr3g0452871 RchiOBHm_Chr5g0056721 RchiOBHm_Chr6g0271921 RchiOBHm_Chr7g0211251 RchiOBHm_Chr7g0231191
rosa_laevigata RLG00000000989 RLG00000001070 RLG00000001076 RLG00000001103 RLG00000001116 RLG00000001118 RLG00000001936 RLG00000001949 RLG00000002610 RLG00000002710 RLG00000003013 RLG00000013562 RLG00000013567 RLG00000018805 RLG00000020667 RLG00000020716 RLG00000020717 RLG00000025564 RLG00000028522 RLG00000030016 RLG00000033070 RLG00000033077 RLG00000033081 RLG00000033086 RLG00000033235 RLG00000033291 RLG00000033337 RLG00000033338 RLG00000033340 RLG00000033345 RLG00000033346 RLG00000033874 RLG00000033885 RLG00000034356 RLG00000034411 RLG00000034414
rosa_multiflora Rmu_co8273153.1_g000001 Rmu_co8288493.1_g000001 Rmu_co8293081.1_g000001 Rmu_co8429197.1_g000001 Rmu_sc0000055.1_g000007 Rmu_sc0000218.1_g000011 Rmu_sc0000533.1_g000061 Rmu_sc0000755.1_g000007 Rmu_sc0000758.1_g000005 Rmu_sc0000898.1_g000011 Rmu_sc0000898.1_g000025 Rmu_sc0001561.1_g000008 Rmu_sc0001571.1_g000004 Rmu_sc0002292.1_g000005 Rmu_sc0002292.1_g000006 Rmu_sc0002308.1_g000010 Rmu_sc0002449.1_g000010 Rmu_sc0002449.1_g000011 Rmu_sc0002536.1_g000004 Rmu_sc0002536.1_g000005 Rmu_sc0002536.1_g000015 Rmu_sc0003238.1_g000014 Rmu_sc0003545.1_g000015 Rmu_sc0003720.1_g000009 Rmu_sc0003878.1_g000040 Rmu_sc0003878.1_g000041 Rmu_sc0003878.1_g000047 Rmu_sc0003878.1_g000048 Rmu_sc0003972.1_g000001 Rmu_sc0004322.1_g000008 Rmu_sc0004379.1_g000014 Rmu_sc0005478.1_g000002 Rmu_sc0006240.1_g000008 Rmu_sc0006847.1_g000022 Rmu_sc0007753.1_g000022 Rmu_sc0007782.1_g000001 Rmu_sc0008328.1_g000002 Rmu_sc0008526.1_g000005 Rmu_sc0008835.1_g000013 Rmu_sc0014005.1_g000009 Rmu_sc0014478.1_g000004 Rmu_sc0015060.1_g000021 Rmu_sc0016364.1_g000001 Rmu_sc0016727.1_g000004 Rmu_sc0020600.1_g000008 Rmu_sc0022743.1_g000003 Rmu_sc0032116.1_g000002 Rmu_sc0033519.1_g000005 Rmu_sc0042823.1_g000001 Rmu_ssc0000134.1_g000011
rosa_roxburghii Rroxscaffold_1G00029360 Rroxscaffold_1G00034880 Rroxscaffold_1G00034930 Rroxscaffold_1G00034970 Rroxscaffold_1G00042100 Rroxscaffold_1G00049130 Rroxscaffold_1G00049660 Rroxscaffold_1G00051410 Rroxscaffold_2G00094840 Rroxscaffold_2G00094850 Rroxscaffold_2G00095300 Rroxscaffold_3G00224990 Rroxscaffold_3G00225050 Rroxscaffold_3G00225080 Rroxscaffold_3G00225360 Rroxscaffold_3G00235370 Rroxscaffold_3G00243820 Rroxscaffold_3G00243860 Rroxscaffold_3G00243920 Rroxscaffold_3G00244920 Rroxscaffold_4G00305330 Rroxscaffold_5G00373100 Rroxscaffold_6G00407840 Rroxscaffold_6G00422000 Rroxscaffold_6G00429880 Rroxscaffold_7G00186180
rosa_rugosa Rorug01G0120600 Rorug01G0127200 Rorug01G0128500 Rorug01G0206000 Rorug02G0251400 Rorug02G0420800 Rorug02G0436800 Rorug02G0441000 Rorug02G0643100 Rorug03G0339200 Rorug04G0168000 Rorug04G0168100 Rorug05G0104500 Rorug05G0105300 Rorug05G0105700 Rorug05G0105800 Rorug05G0118900 Rorug05G0175700 Rorug05G0228200 Rorug05G0229000 Rorug05G0229500 Rorug06G0064300 Rorug07G0124700 Rorug07G0156100 Rorug07G0156700 Rorug07G0158100 Rorug07G0219600 Rorug07G0273400 Rorug07G0291800 Rorug07G0294300 Rorug07G0297400 Rorug07G0297800
rosa_samantha Rh1BG189400 Rh1CG103600 Rh1CG142100 Rh1CG208100 Rh1DG209200 Rh2CG296600 Rh2CG301600 Rh2CG485100 Rh2CG489800 Rh2CG490000 Rh2DG333700 Rh2DG526600 Rh2DG526800 Rh3BG048500 Rh3CG047100 Rh3DG048100 Rh5AG198800 Rh5AG211300 Rh5AG213900 Rh5AG217700 Rh5AG221800 Rh5AG225800 Rh5AG262500 Rh5AG309600 Rh5BG210200 Rh5CG216300 Rh5CG217100 Rh5CG217500 Rh5CG233900 Rh5CG236800 Rh5CG239600 Rh5CG241200 Rh5CG244900 Rh5CG245100 Rh5CG254600 Rh5CG299700 Rh5CG343400 Rh5CG343600 Rh5CG406800 Rh5DG215100 Rh5DG215200 Rh5DG220900 Rh5DG222800 Rh5DG226600 Rh5DG226700 Rh5DG226800 Rh5DG231600 Rh5DG273600 Rh5DG327700 Rh5DG328300 Rh6BG185200 Rh6DG174700 Rh7AG257100 Rh7AG285100 Rh7AG293000 Rh7AG294700 Rh7AG296700 Rh7AG297200 Rh7AG298400 Rh7AG306700 Rh7AG362600 Rh7AG379100 Rh7AG449400 Rh7AG451800 Rh7AG453400 Rh7AG453500 Rh7AG459000 Rh7BG251000 Rh7BG275900 Rh7BG276100 Rh7BG276800 Rh7BG285400 Rh7BG353800 Rh7BG400900 Rh7BG418600 Rh7BG421100 Rh7BG424000 Rh7BG424300 Rh7BG424400 Rh7DG288700
rosa_wichuraiana Rw0G000390 Rw0G010750 Rw0G015930 Rw0G020680 Rw0G023760 Rw1G008930 Rw1G012360 Rw1G019040 Rw2G025060 Rw2G041400 Rw2G041420 Rw3G003610 Rw5G018050 Rw5G018130 Rw5G019340 Rw5G019550 Rw5G020700 Rw5G024510 Rw5G036060 Rw6G015630 Rw7G021960 Rw7G024340 Rw7G024900 Rw7G024940 Rw7G025030 Rw7G025280 Rw7G030800 Rw7G032090 Rw7G037610 Rw7G038010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1304
Acc65I GGTACC 1 cut(s) 130
AccB1I GGYRCC 3 cut(s) 130, 317, 970
AccI GTMKAC 1 cut(s) 351
AccII CGCG 1 cut(s) 705
AciI CCGC 4 cut(s) 97, 315, 703, 939
AclWI GGATC 5 cut(s) 437, 522, 535, 997, 1268
AfaI GTAC 8 cut(s) 132, 170, 206, 1077, 1140, 1204, 1246, 1318
AfiI CCNNNNNNNGG 2 cut(s) 327, 828
AflIII ACRYGT 2 cut(s) 201, 1116
AgsI TTSAA 6 cut(s) 157, 238, 1174, 1209, 1251, 1330
AjnI CCWGG 3 cut(s) 185, 320, 868
AloI GAACNNNNNNTCC 2 cut(s) 78, 110
AluBI AGCT 8 cut(s) 574, 905, 986, 1094, 1151, 1170, 1268, 1366
AluI AGCT 8 cut(s) 574, 905, 986, 1094, 1151, 1170, 1268, 1366
AlwI GGATC 5 cut(s) 437, 522, 535, 997, 1268
AlwNI CAGNNNCTG 1 cut(s) 69
Ama87I CYCGRG 1 cut(s) 437
AoxI GGCC 2 cut(s) 298, 962
ApeKI GCWGC 6 cut(s) 338, 802, 1088, 1091, 1310, 1366
Asp718I GGTACC 1 cut(s) 130
AspS9I GGNCC 2 cut(s) 298, 713
AsuC2I CCSGG 4 cut(s) 57, 135, 292, 566
AsuHPI GGTGA 2 cut(s) 149, 185
AsuII TTCGAA 1 cut(s) 444
AvaI CYCGRG 1 cut(s) 437
AvaII GGWCC 1 cut(s) 713
AxyI CCTNAGG 1 cut(s) 512
BaeGI GKGCMC 1 cut(s) 1046
BamHI GGATCC 1 cut(s) 527
BanI GGYRCC 3 cut(s) 130, 317, 970
BanII GRGCYC 3 cut(s) 186, 773, 1381
BbsI GAAGAC 1 cut(s) 147
BbvI GCAGC 6 cut(s) 325, 789, 1100, 1103, 1297, 1353
BccI CCATC 4 cut(s) 11, 420, 611, 724
BciT130I CCWGG 3 cut(s) 187, 322, 870
BciVI GTATCC 1 cut(s) 1338
BclI TGATCA 4 cut(s) 451, 907, 1213, 1255
BcnI CCSGG 4 cut(s) 57, 135, 292, 566
BfaI CTAG 3 cut(s) 899, 953, 1013
BfmI CTRYAG 3 cut(s) 61, 1278, 1311
BfuAI ACCTGC 1 cut(s) 1304
BfuI GTATCC 1 cut(s) 1338
BglII AGATCT 1 cut(s) 244
BisI GCNGC 7 cut(s) 316, 339, 803, 1089, 1092, 1311, 1367
BlsI GCNGC 7 cut(s) 317, 340, 804, 1090, 1093, 1312, 1368
BmcAI AGTACT 2 cut(s) 1204, 1246
Bme1390I CCNGG 7 cut(s) 57, 135, 187, 292, 322, 566, 870
Bme18I GGWCC 1 cut(s) 713
BmeT110I CYCGRG 1 cut(s) 437
BmgT120I GGNCC 2 cut(s) 298, 713
BmiI GGNNCC 4 cut(s) 132, 319, 529, 972
BmrFI CCNGG 7 cut(s) 57, 135, 187, 292, 322, 566, 870
BmsI GCATC 6 cut(s) 52, 516, 697, 808, 1065, 1141
BpiI GAAGAC 1 cut(s) 147
Bpu10I CCTNAGC 1 cut(s) 767
Bpu14I TTCGAA 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 250
BpuMI CCSGG 4 cut(s) 57, 135, 292, 566
BsaAI YACGTR 1 cut(s) 1373
BsaBI GATNNNNATC 2 cut(s) 1260, 1387
BsaJI CCNNGG 5 cut(s) 75, 111, 185, 186, 1340
BsaWI WCCGGW 2 cut(s) 581, 692
BsaXI ACNNNNNCTCC 6 cut(s) 78, 108, 114, 144, 576, 606
Bsc4I CCNNNNNNNGG 2 cut(s) 327, 828
Bse1I ACTGG 1 cut(s) 618
Bse21I CCTNAGG 1 cut(s) 512
Bse3DI GCAATG 2 cut(s) 953, 1058
Bse8I GATNNNNATC 2 cut(s) 1260, 1387
BseBI CCWGG 3 cut(s) 187, 322, 870
BseDI CCNNGG 5 cut(s) 75, 111, 185, 186, 1340
BseGI GGATG 4 cut(s) 22, 507, 622, 1132
BseJI GATNNNNATC 2 cut(s) 1260, 1387
BseLI CCNNNNNNNGG 2 cut(s) 327, 828
BseMI GCAATG 2 cut(s) 953, 1058
BseMII CTCAG 3 cut(s) 402, 758, 1094
BseNI ACTGG 1 cut(s) 618
BseRI GAGGAG 2 cut(s) 95, 1376
BseSI GKGCMC 1 cut(s) 1046
BseXI GCAGC 6 cut(s) 325, 789, 1100, 1103, 1297, 1353
Bsh1236I CGCG 1 cut(s) 705
BshFI GGCC 2 cut(s) 300, 964
BshNI GGYRCC 3 cut(s) 130, 317, 970
BsiHKCI CYCGRG 1 cut(s) 437
BsiSI CCGG 6 cut(s) 56, 135, 292, 565, 582, 693
BslFI GGGAC 6 cut(s) 57, 93, 203, 212, 347, 578
BslI CCNNNNNNNGG 2 cut(s) 327, 828
BsmFI GGGAC 6 cut(s) 57, 93, 203, 212, 347, 578
BsmI GAATGC 1 cut(s) 289
BsnI GGCC 2 cut(s) 300, 964
BsoBI CYCGRG 1 cut(s) 437
Bsp119I TTCGAA 1 cut(s) 444
Bsp1286I GDGCHC 4 cut(s) 186, 773, 1046, 1381
BspACI CCGC 4 cut(s) 97, 315, 703, 939
BspANI GGCC 2 cut(s) 300, 964
BspCNI CTCAG 3 cut(s) 403, 759, 1095
BspFNI CGCG 1 cut(s) 705
BspHI TCATGA 1 cut(s) 910
BspLI GGNNCC 4 cut(s) 132, 319, 529, 972
BspMAI CTGCAG 1 cut(s) 1315
BspMI ACCTGC 1 cut(s) 1304
BspPI GGATC 5 cut(s) 437, 522, 535, 997, 1268
BspQI GCTCTTC 1 cut(s) 1122
BspT104I TTCGAA 1 cut(s) 444
BspT107I GGYRCC 3 cut(s) 130, 317, 970
BsrDI GCAATG 2 cut(s) 953, 1058
BsrI ACTGG 1 cut(s) 618
BssECI CCNNGG 5 cut(s) 75, 111, 185, 186, 1340
BssNAI GTATAC 1 cut(s) 352
BssT1I CCWWGG 3 cut(s) 75, 111, 1340
Bst1107I GTATAC 1 cut(s) 352
Bst2UI CCWGG 3 cut(s) 187, 322, 870
Bst4CI ACNGT 5 cut(s) 173, 280, 752, 1041, 1064
Bst6I CTCTTC 2 cut(s) 120, 1122
BstBAI YACGTR 1 cut(s) 1373
BstBI TTCGAA 1 cut(s) 444
BstC8I GCNNGC 4 cut(s) 470, 576, 684, 1192
BstDEI CTNAG 5 cut(s) 411, 512, 767, 1103, 1392
BstF5I GGATG 4 cut(s) 22, 507, 622, 1132
BstFNI CGCG 1 cut(s) 705
BstMWI GCNNNNNNNGC 1 cut(s) 970
BstNI CCWGG 3 cut(s) 187, 322, 870
BstNSI RCATGY 5 cut(s) 205, 472, 686, 1012, 1120
BstSCI CCNGG 7 cut(s) 55, 133, 185, 290, 320, 564, 868
BstSFI CTRYAG 3 cut(s) 61, 1278, 1311
BstSLI GKGCMC 1 cut(s) 1046
BstUI CGCG 1 cut(s) 705
BstV1I GCAGC 6 cut(s) 325, 789, 1100, 1103, 1297, 1353
BstV2I GAAGAC 1 cut(s) 147
BstX2I RGATCY 2 cut(s) 244, 527
BstXI CCANNNNNNTGG 1 cut(s) 17
BstYI RGATCY 2 cut(s) 244, 527
BstZ17I GTATAC 1 cut(s) 352
Bsu36I CCTNAGG 1 cut(s) 512
BsuI GTATCC 1 cut(s) 1338
BsuRI GGCC 2 cut(s) 300, 964
BtgZI GCGATG 1 cut(s) 720
BtsCI GGATG 4 cut(s) 22, 507, 622, 1132
BtsI GCAGTG 1 cut(s) 833
BtsIMutI CAGTG 3 cut(s) 611, 833, 1046
BveI ACCTGC 1 cut(s) 1304
Cac8I GCNNGC 4 cut(s) 470, 576, 684, 1192
CaiI CAGNNNCTG 1 cut(s) 69
CciI TCATGA 1 cut(s) 910
Cfr13I GGNCC 2 cut(s) 298, 713
CseI GACGC 1 cut(s) 344
Csp6I GTAC 8 cut(s) 131, 169, 205, 1076, 1139, 1203, 1245, 1317
CviQI GTAC 8 cut(s) 131, 169, 205, 1076, 1139, 1203, 1245, 1317
DdeI CTNAG 5 cut(s) 411, 512, 767, 1103, 1392
Eam1104I CTCTTC 2 cut(s) 120, 1122
EarI CTCTTC 2 cut(s) 120, 1122
Eco130I CCWWGG 3 cut(s) 75, 111, 1340
Eco24I GRGCYC 3 cut(s) 186, 773, 1381
Eco32I GATATC 1 cut(s) 7
Eco47I GGWCC 1 cut(s) 713
Eco81I CCTNAGG 1 cut(s) 512
Eco88I CYCGRG 1 cut(s) 437
EcoRII CCWGG 3 cut(s) 185, 320, 868
EcoRV GATATC 1 cut(s) 7
EcoT14I CCWWGG 3 cut(s) 75, 111, 1340
EcoT22I ATGCAT 3 cut(s) 509, 684, 1058
EcoT38I GRGCYC 3 cut(s) 186, 773, 1381
ErhI CCWWGG 3 cut(s) 75, 111, 1340
FalI AAGNNNNNCTT 6 cut(s) 212, 244, 376, 408, 660, 692
FaqI GGGAC 6 cut(s) 57, 93, 203, 212, 347, 578
FauNDI CATATG 2 cut(s) 194, 811
FbaI TGATCA 4 cut(s) 451, 907, 1213, 1255
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 7 cut(s) 316, 339, 803, 1089, 1092, 1311, 1367
FokI GGATG 4 cut(s) 29, 494, 629, 1119
FriOI GRGCYC 3 cut(s) 186, 773, 1381
Fsp4HI GCNGC 7 cut(s) 316, 339, 803, 1089, 1092, 1311, 1367
FspBI CTAG 3 cut(s) 899, 953, 1013
GluI GCNGC 7 cut(s) 316, 339, 803, 1089, 1092, 1311, 1367
HaeIII GGCC 2 cut(s) 300, 964
HapII CCGG 6 cut(s) 56, 135, 292, 565, 582, 693
HgaI GACGC 1 cut(s) 344
HindIII AAGCTT 1 cut(s) 572
HinfI GANTC 1 cut(s) 644
HpaII CCGG 6 cut(s) 56, 135, 292, 565, 582, 693
HphI GGTGA 2 cut(s) 149, 185
Hpy166II GTNNAC 4 cut(s) 176, 352, 787, 854
Hpy188I TCNGA 5 cut(s) 311, 412, 649, 730, 1360
Hpy188III TCNNGA 2 cut(s) 788, 911
Hpy8I GTNNAC 4 cut(s) 176, 352, 787, 854
HpyAV CCTTC 3 cut(s) 289, 936, 1295
HpyCH4III ACNGT 5 cut(s) 173, 280, 752, 1041, 1064
HpyCH4IV ACGT 3 cut(s) 348, 1074, 1372
HpyF10VI GCNNNNNNNGC 1 cut(s) 970
HpyF3I CTNAG 5 cut(s) 411, 512, 767, 1103, 1392
HpySE526I ACGT 3 cut(s) 348, 1074, 1372
KpnI GGTACC 1 cut(s) 134
Ksp22I TGATCA 4 cut(s) 451, 907, 1213, 1255
LguI GCTCTTC 1 cut(s) 1122
LmnI GCTCC 1 cut(s) 1363
Lsp1109I GCAGC 6 cut(s) 325, 789, 1100, 1103, 1297, 1353
LweI GCATC 6 cut(s) 52, 516, 697, 808, 1065, 1141
MaeI CTAG 3 cut(s) 899, 953, 1013
MaeII ACGT 3 cut(s) 348, 1074, 1372
MaeIII GTNAC 2 cut(s) 374, 1064
MflI RGATCY 2 cut(s) 244, 527
MhlI GDGCHC 4 cut(s) 186, 773, 1046, 1381
MluCI AATT 6 cut(s) 163, 651, 687, 841, 934, 1024
Mph1103I ATGCAT 3 cut(s) 509, 684, 1058
MseI TTAA 1 cut(s) 654
MslI CAYNNNNRTG 1 cut(s) 15
MspA1I CMGCKG 1 cut(s) 986
MspI CCGG 6 cut(s) 56, 135, 292, 565, 582, 693
MspR9I CCNGG 7 cut(s) 57, 135, 187, 292, 322, 566, 870
Mva1269I GAATGC 1 cut(s) 289
MvaI CCWGG 3 cut(s) 187, 322, 870
MvnI CGCG 1 cut(s) 705
MwoI GCNNNNNNNGC 1 cut(s) 970
NciI CCSGG 4 cut(s) 57, 135, 292, 566
NdeI CATATG 2 cut(s) 194, 811
NlaIV GGNNCC 4 cut(s) 132, 319, 529, 972
NmuCI GTSAC 1 cut(s) 1064
NsiI ATGCAT 3 cut(s) 509, 684, 1058
NspI RCATGY 5 cut(s) 205, 472, 686, 1012, 1120
NspV TTCGAA 1 cut(s) 444
PaeI GCATGC 2 cut(s) 472, 686
PaeR7I CTCGAG 1 cut(s) 437
PagI TCATGA 1 cut(s) 910
PasI CCCWGGG 1 cut(s) 186
PciI ACATGT 2 cut(s) 201, 1116
PciSI GCTCTTC 1 cut(s) 1122
PcsI WCGNNNNNNNCGW 1 cut(s) 1378
PctI GAATGC 1 cut(s) 289
PfeI GAWTC 1 cut(s) 644
PfoI TCCNGGA 1 cut(s) 290
PkrI GCNGC 7 cut(s) 317, 340, 804, 1090, 1093, 1312, 1368
Ppu21I YACGTR 1 cut(s) 1373
PscI ACATGT 2 cut(s) 201, 1116
Psp6I CCWGG 3 cut(s) 185, 320, 868
PspGI CCWGG 3 cut(s) 185, 320, 868
PspN4I GGNNCC 4 cut(s) 132, 319, 529, 972
PspPI GGNCC 2 cut(s) 298, 713
PspXI VCTCGAGB 1 cut(s) 437
PstI CTGCAG 1 cut(s) 1315
PstNI CAGNNNCTG 1 cut(s) 69
PsuI RGATCY 2 cut(s) 244, 527
PvuII CAGCTG 1 cut(s) 986
RsaI GTAC 8 cut(s) 132, 170, 206, 1077, 1140, 1204, 1246, 1318
RsaNI GTAC 8 cut(s) 131, 169, 205, 1076, 1139, 1203, 1245, 1317
RseI CAYNNNNRTG 1 cut(s) 15
SapI GCTCTTC 1 cut(s) 1122
SaqAI TTAA 1 cut(s) 654
SatI GCNGC 7 cut(s) 316, 339, 803, 1089, 1092, 1311, 1367
Sau96I GGNCC 2 cut(s) 298, 713
ScaI AGTACT 2 cut(s) 1204, 1246
ScrFI CCNGG 7 cut(s) 57, 135, 187, 292, 322, 566, 870
SduI GDGCHC 4 cut(s) 186, 773, 1046, 1381
SfaNI GCATC 6 cut(s) 52, 516, 697, 808, 1065, 1141
SfcI CTRYAG 3 cut(s) 61, 1278, 1311
Sfr274I CTCGAG 1 cut(s) 437
SfuI TTCGAA 1 cut(s) 444
SinI GGWCC 1 cut(s) 713
SlaI CTCGAG 1 cut(s) 437
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 2 cut(s) 229, 437
SmoI CTYRAG 2 cut(s) 229, 437
SphI GCATGC 2 cut(s) 472, 686
Sse9I AATT 6 cut(s) 163, 651, 687, 841, 934, 1024
SsiI CCGC 4 cut(s) 97, 315, 703, 939
SspI AATATT 1 cut(s) 30
SspMI CTAG 3 cut(s) 899, 953, 1013
StyD4I CCNGG 7 cut(s) 55, 133, 185, 290, 320, 564, 868
StyI CCWWGG 3 cut(s) 75, 111, 1340
TaaI ACNGT 5 cut(s) 173, 280, 752, 1041, 1064
TaiI ACGT 3 cut(s) 351, 1077, 1375
TaqI TCGA 7 cut(s) 438, 444, 876, 1034, 1238, 1264, 1381
TasI AATT 6 cut(s) 163, 651, 687, 841, 934, 1024
TatI WGTACW 2 cut(s) 1202, 1244
TauI GCSGC 1 cut(s) 318
TfiI GAWTC 1 cut(s) 644
Tru1I TTAA 1 cut(s) 654
Tru9I TTAA 1 cut(s) 654
TscAI CASTG 3 cut(s) 618, 833, 1046
TseFI GTSAC 1 cut(s) 1064
TseI GCWGC 6 cut(s) 338, 802, 1088, 1091, 1310, 1366
Tsp45I GTSAC 1 cut(s) 1064
TspDTI ATGAA 3 cut(s) 39, 927, 1314
TspRI CASTG 3 cut(s) 618, 833, 1046
VpaK11BI GGWCC 1 cut(s) 713
XceI RCATGY 5 cut(s) 205, 472, 686, 1012, 1120
XhoI CTCGAG 1 cut(s) 437
XmiI GTMKAC 1 cut(s) 351
XspI CTAG 3 cut(s) 899, 953, 1013
ZrmI AGTACT 2 cut(s) 1204, 1246
Zsp2I ATGCAT 3 cut(s) 509, 684, 1058
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.