Rroxscaffold_3G00235370
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000076
Physical Location & Seq
Reverse (-)
22338371 .. 22339759
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00235370.1

Sequence Viewer

Length: 1389 bp
ATGGCCATGCTGCAAGAGTTTCCAATGGAGGAGAGCAGAGGCAATCAACTTCCTGGCCAGAGGTTCTGCCCCATGGAAGATGAACTAGTTCTCTTCTACCTCAAGCCCATGTTGAGCGGACAGAACGTACCCGGCAGAAACCGCGTGGTGTTCGACTGCGACCTCTACGGTCACCAAGAACCTTGGGAGATATGGGAGGCCTTCAAGACCAAAAGACCACACGACTTGAGGCTCAACAAGGACATTTACTTCTTCACCCAACACAAGAAGATGAGTTCCACAGACAAGCGAGTACGCCGGAATGTTGGAAGTGGCACGTGGAAGGGCGATGACTCCGGCAAGCCAATACGATATGTTGAAACTGGTCGTGTTGTTGGCTTGAAGAAAAGATATACTTACAAGAACGATGACTCGGTGCACAATGGCTGTTGGATCTTGTATGAGTTCTACCTTGATCAATCACTCAGAGACAAGAAACAAAATGTGAAAGACTATGTTCTTTGTCTACTACGAAAGAATGGTGAACCCAAAACCAAGATTGAGAAGAAGAGAAAGCAACGTGAAGAGGAAGAGGTTCTTGAAAACAATTATGCATTCAATGATGGAGAAAACTCGAAAAGGGAGCAAGAAGAGTTGCTTGAGCTACAAGCGAAGAGGCAACGAACTGTGTCATTCATTGGTAATGCACCACTAACAATGCCATCAGAAGATGATGTTGCATTCGCAGCTGAACTAGAAGATTCATTGGAATGCTTTGAAGATGATAATGCGCCACTAACAATCCCATCAGAAGAAGATGCTTCATTCGCAGCTGAACTAGAAGAGTCATTGGAATGCTTTGAAGATGATAATGCACCCTCAGAAGCTCGAGCAATTGGCTTTCAAGCTGAGGAGAATGGTGGACTCCAACAATTAGTAGCCAAGGTGCAATCAGGCCCTTCATTTGTAGACGATCATGGAATATTTAATCCGTTGCCGGAGGAAGACTTTATCTTGGCGGAAATGTTAGAAGAAATGGGTATGGTAGAAATGGAAGAACCAGTTCTTAATGGTAAGAGTATTAATATAGATGTGGCTGAAGAAAACGTGGAAAACAATACCCTTCTTTCTGCTCCCATATCATCCATGTCTGCGGCCTATGATGCTTGCAATGATATGCCATATTTATCCTCGGCAAATGGTTGCATTGATCTATCTGAAAGCAATAATGTTTGTGGAGGATCGATTGGCTTTCAGGATAATGGTGCGTACTGGGTTGAGTCTTTGGTGGAGGTCCCAAGTACTGTTGAGCAACAAAAGATAGCTGATGAAGATTGTTCAGATTGGTTGGAGTCGATCAATTTTAGTCCTGAGGAGAACAACTTCCTTTTCGGTGAAATTCAATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

462

Amino Acids

52.61

Weight (kDa)

4.43

Isoelectric Point (pI)

61.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 18 - 150 1.4e-22 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53610 AT1G53620
fragaria_vesca FvH4_3g16890 FvH4_3g16900 FvH4_3g16910 FvH4_3g17012 FvH4_3g18170 FvH4_3g18460 FvH4_3g18930 FvH4_3g18940 FvH4_3g25560 FvH4_4g12410 FvH4_5g05980 FvH4_5g24860 FvH4_5g25360 FvH4_5g25510 FvH4_5g27470 FvH4_5g27620 FvH4_5g27760 FvH4_5g29460 FvH4_6g04191 FvH4_6g39190 FvH4_6g39200 FvH4_6g39580 FvH4_6g39600 FvH4_7g11470
malus_domestica MD00G1154700.v1.1 MD00G1154800.v1.1 MD00G1155000.v1.1 MD03G1255000.v1.1 MD03G1255100.v1.1 MD03G1255200.v1.1 MD03G1255300.v1.1 MD06G1030300.v1.1 MD11G1219300.v1.1 MD11G1264900.v1.1
prunus_persica Prupe.1G575600_v2.0.a1 Prupe.3G065000_v2.0.a1 Prupe.3G111400_v2.0.a1 Prupe.4G151300_v2.0.a1 Prupe.4G151900_v2.0.a1 Prupe.4G153700_v2.0.a1 Prupe.4G154000_v2.0.a1 Prupe.4G230600_v2.0.a1 Prupe.4G230900_v2.0.a1 Prupe.4G231000_v2.0.a1 Prupe.4G246100_v2.0.a1 Prupe.4G255500_v2.0.a1 Prupe.6G133600_v2.0.a1 Prupe.6G134000_v2.0.a1 Prupe.I005300_v2.0.a1
pyrus_communis pycom03g14030 pycom03g15340
rosa_chinensis RchiOBHm_Chr3g0452871 RchiOBHm_Chr5g0056721 RchiOBHm_Chr6g0271921 RchiOBHm_Chr7g0211251 RchiOBHm_Chr7g0231191
rosa_laevigata RLG00000000989 RLG00000001070 RLG00000001076 RLG00000001103 RLG00000001116 RLG00000001118 RLG00000001936 RLG00000001949 RLG00000002610 RLG00000002710 RLG00000003013 RLG00000013562 RLG00000013567 RLG00000018805 RLG00000020667 RLG00000020716 RLG00000020717 RLG00000025564 RLG00000028522 RLG00000030016 RLG00000033070 RLG00000033077 RLG00000033081 RLG00000033086 RLG00000033235 RLG00000033291 RLG00000033337 RLG00000033338 RLG00000033340 RLG00000033345 RLG00000033346 RLG00000033874 RLG00000033885 RLG00000034356 RLG00000034411 RLG00000034414
rosa_multiflora Rmu_co8273153.1_g000001 Rmu_co8288493.1_g000001 Rmu_co8293081.1_g000001 Rmu_co8429197.1_g000001 Rmu_sc0000055.1_g000007 Rmu_sc0000218.1_g000011 Rmu_sc0000533.1_g000061 Rmu_sc0000755.1_g000007 Rmu_sc0000758.1_g000005 Rmu_sc0000898.1_g000011 Rmu_sc0000898.1_g000025 Rmu_sc0001561.1_g000008 Rmu_sc0001571.1_g000004 Rmu_sc0002292.1_g000005 Rmu_sc0002292.1_g000006 Rmu_sc0002308.1_g000010 Rmu_sc0002449.1_g000010 Rmu_sc0002449.1_g000011 Rmu_sc0002536.1_g000004 Rmu_sc0002536.1_g000005 Rmu_sc0002536.1_g000015 Rmu_sc0003238.1_g000014 Rmu_sc0003545.1_g000015 Rmu_sc0003720.1_g000009 Rmu_sc0003878.1_g000040 Rmu_sc0003878.1_g000041 Rmu_sc0003878.1_g000047 Rmu_sc0003878.1_g000048 Rmu_sc0003972.1_g000001 Rmu_sc0004322.1_g000008 Rmu_sc0004379.1_g000014 Rmu_sc0005478.1_g000002 Rmu_sc0006240.1_g000008 Rmu_sc0006847.1_g000022 Rmu_sc0007753.1_g000022 Rmu_sc0007782.1_g000001 Rmu_sc0008328.1_g000002 Rmu_sc0008526.1_g000005 Rmu_sc0008835.1_g000013 Rmu_sc0014005.1_g000009 Rmu_sc0014478.1_g000004 Rmu_sc0015060.1_g000021 Rmu_sc0016364.1_g000001 Rmu_sc0016727.1_g000004 Rmu_sc0020600.1_g000008 Rmu_sc0022743.1_g000003 Rmu_sc0032116.1_g000002 Rmu_sc0033519.1_g000005 Rmu_sc0042823.1_g000001 Rmu_ssc0000134.1_g000011
rosa_roxburghii Rroxscaffold_1G00029360 Rroxscaffold_1G00034880 Rroxscaffold_1G00034930 Rroxscaffold_1G00034970 Rroxscaffold_1G00042100 Rroxscaffold_1G00049130 Rroxscaffold_1G00049660 Rroxscaffold_1G00051410 Rroxscaffold_2G00094840 Rroxscaffold_2G00094850 Rroxscaffold_2G00095300 Rroxscaffold_3G00224990 Rroxscaffold_3G00225050 Rroxscaffold_3G00225080 Rroxscaffold_3G00225360 Rroxscaffold_3G00235370 Rroxscaffold_3G00243820 Rroxscaffold_3G00243860 Rroxscaffold_3G00243920 Rroxscaffold_3G00244920 Rroxscaffold_4G00305330 Rroxscaffold_5G00373100 Rroxscaffold_6G00407840 Rroxscaffold_6G00422000 Rroxscaffold_6G00429880 Rroxscaffold_7G00186180
rosa_rugosa Rorug01G0120600 Rorug01G0127200 Rorug01G0128500 Rorug01G0206000 Rorug02G0251400 Rorug02G0420800 Rorug02G0436800 Rorug02G0441000 Rorug02G0643100 Rorug03G0339200 Rorug04G0168000 Rorug04G0168100 Rorug05G0104500 Rorug05G0105300 Rorug05G0105700 Rorug05G0105800 Rorug05G0118900 Rorug05G0175700 Rorug05G0228200 Rorug05G0229000 Rorug05G0229500 Rorug06G0064300 Rorug07G0124700 Rorug07G0156100 Rorug07G0156700 Rorug07G0158100 Rorug07G0219600 Rorug07G0273400 Rorug07G0291800 Rorug07G0294300 Rorug07G0297400 Rorug07G0297800
rosa_samantha Rh1BG189400 Rh1CG103600 Rh1CG142100 Rh1CG208100 Rh1DG209200 Rh2CG296600 Rh2CG301600 Rh2CG485100 Rh2CG489800 Rh2CG490000 Rh2DG333700 Rh2DG526600 Rh2DG526800 Rh3BG048500 Rh3CG047100 Rh3DG048100 Rh5AG198800 Rh5AG211300 Rh5AG213900 Rh5AG217700 Rh5AG221800 Rh5AG225800 Rh5AG262500 Rh5AG309600 Rh5BG210200 Rh5CG216300 Rh5CG217100 Rh5CG217500 Rh5CG233900 Rh5CG236800 Rh5CG239600 Rh5CG241200 Rh5CG244900 Rh5CG245100 Rh5CG254600 Rh5CG299700 Rh5CG343400 Rh5CG343600 Rh5CG406800 Rh5DG215100 Rh5DG215200 Rh5DG220900 Rh5DG222800 Rh5DG226600 Rh5DG226700 Rh5DG226800 Rh5DG231600 Rh5DG273600 Rh5DG327700 Rh5DG328300 Rh6BG185200 Rh6DG174700 Rh7AG257100 Rh7AG285100 Rh7AG293000 Rh7AG294700 Rh7AG296700 Rh7AG297200 Rh7AG298400 Rh7AG306700 Rh7AG362600 Rh7AG379100 Rh7AG449400 Rh7AG451800 Rh7AG453400 Rh7AG453500 Rh7AG459000 Rh7BG251000 Rh7BG275900 Rh7BG276100 Rh7BG276800 Rh7BG285400 Rh7BG353800 Rh7BG400900 Rh7BG418600 Rh7BG421100 Rh7BG424000 Rh7BG424300 Rh7BG424400 Rh7DG288700
rosa_wichuraiana Rw0G000390 Rw0G010750 Rw0G015930 Rw0G020680 Rw0G023760 Rw1G008930 Rw1G012360 Rw1G019040 Rw2G025060 Rw2G041400 Rw2G041420 Rw3G003610 Rw5G018050 Rw5G018130 Rw5G019340 Rw5G019550 Rw5G020700 Rw5G024510 Rw5G036060 Rw6G015630 Rw7G021960 Rw7G024340 Rw7G024900 Rw7G024940 Rw7G025030 Rw7G025280 Rw7G030800 Rw7G032090 Rw7G037610 Rw7G038010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 117
AccI GTMKAC 2 cut(s) 505, 948
AccII CGCG 1 cut(s) 144
AciI CCGC 4 cut(s) 117, 142, 998, 1133
AclWI GGATC 2 cut(s) 440, 1228
AcoI YGGCCR 2 cut(s) 3, 55
AcsI RAATTY 1 cut(s) 1377
AcuI CTGAAG 1 cut(s) 1098
AcvI CACGTG 1 cut(s) 318
AfaI GTAC 4 cut(s) 129, 294, 1250, 1282
AgsI TTSAA 9 cut(s) 205, 359, 382, 581, 598, 758, 842, 884, 1382
AhlI ACTAGT 1 cut(s) 85
AjnI CCWGG 1 cut(s) 52
AluBI AGCT 6 cut(s) 643, 728, 812, 866, 887, 1304
AluI AGCT 6 cut(s) 643, 728, 812, 866, 887, 1304
Alw21I GWGCWC 1 cut(s) 420
Alw26I GTCTC 1 cut(s) 462
Alw44I GTGCAC 1 cut(s) 416
AlwI GGATC 2 cut(s) 440, 1228
Ama87I CYCGRG 1 cut(s) 867
AoxI GGCC 5 cut(s) 3, 55, 198, 934, 1134
ApaLI GTGCAC 1 cut(s) 416
ApeKI GCWGC 3 cut(s) 10, 725, 809
ApoI RAATTY 1 cut(s) 1377
AseI ATTAAT 1 cut(s) 1062
Asp700I GAANNNNTTC 4 cut(s) 87, 573, 1041, 1361
AspLEI GCGC 1 cut(s) 772
AspS9I GGNCC 2 cut(s) 935, 1273
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 4 cut(s) 164, 247, 533, 1385
AvaI CYCGRG 1 cut(s) 867
AvaII GGWCC 1 cut(s) 1273
AxyI CCTNAGG 1 cut(s) 1350
BaeGI GKGCMC 1 cut(s) 420
BalI TGGCCA 2 cut(s) 5, 57
BbrPI CACGTG 1 cut(s) 318
BbsI GAAGAC 1 cut(s) 990
Bbv12I GWGCWC 1 cut(s) 420
BbvCI CCTCAGC 1 cut(s) 888
BbvI GCAGC 2 cut(s) 737, 821
BccI CCATC 3 cut(s) 596, 709, 793
BciT130I CCWGG 1 cut(s) 54
BclI TGATCA 1 cut(s) 454
BcnI CCSGG 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 462
BcuI ACTAGT 1 cut(s) 85
BfaI CTAG 3 cut(s) 86, 734, 818
BisI GCNGC 4 cut(s) 11, 726, 810, 1134
BlsI GCNGC 4 cut(s) 12, 727, 811, 1135
BmcAI AGTACT 1 cut(s) 1282
Bme1390I CCNGG 2 cut(s) 54, 132
Bme18I GGWCC 1 cut(s) 1273
BmeT110I CYCGRG 1 cut(s) 867
BmgT120I GGNCC 2 cut(s) 935, 1273
BmiI GGNNCC 1 cut(s) 1275
BmrFI CCNGG 2 cut(s) 54, 132
BmrI ACTGGG 1 cut(s) 1261
BmsI GCATC 2 cut(s) 787, 1132
BmuI ACTGGG 1 cut(s) 1261
BpiI GAAGAC 1 cut(s) 990
Bpu10I CCTNAGC 1 cut(s) 888
BpuEI CTTGAG 3 cut(s) 86, 247, 659
BpuMI CCSGG 1 cut(s) 132
Bsa29I ATCGAT 1 cut(s) 1223
BsaAI YACGTR 1 cut(s) 318
BsaJI CCNNGG 4 cut(s) 72, 182, 921, 1170
Bse1I ACTGG 3 cut(s) 367, 1040, 1256
Bse21I CCTNAGG 1 cut(s) 1350
Bse3DI GCAATG 1 cut(s) 1156
BseBI CCWGG 1 cut(s) 54
BseCI ATCGAT 1 cut(s) 1223
BseDI CCNNGG 4 cut(s) 72, 182, 921, 1170
BseGI GGATG 1 cut(s) 1121
BseMI GCAATG 1 cut(s) 1156
BseMII CTCAG 4 cut(s) 478, 873, 879, 1341
BseNI ACTGG 3 cut(s) 367, 1040, 1256
BseRI GAGGAG 3 cut(s) 44, 905, 1367
BseSI GKGCMC 1 cut(s) 420
BseXI GCAGC 2 cut(s) 737, 821
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 5 cut(s) 5, 57, 200, 936, 1136
BshVI ATCGAT 1 cut(s) 1223
BsiHKAI GWGCWC 1 cut(s) 420
BsiHKCI CYCGRG 1 cut(s) 867
BsiSI CCGG 4 cut(s) 132, 298, 336, 977
BslFI GGGAC 1 cut(s) 1259
BsmAI GTCTC 1 cut(s) 462
BsmFI GGGAC 1 cut(s) 1259
BsmI GAATGC 4 cut(s) 593, 719, 755, 839
BsnI GGCC 5 cut(s) 5, 57, 200, 936, 1136
BsoBI CYCGRG 1 cut(s) 867
Bsp1286I GDGCHC 1 cut(s) 420
Bsp143I GATC 6 cut(s) 432, 454, 952, 1189, 1220, 1335
Bsp19I CCATGG 1 cut(s) 72
BspACI CCGC 4 cut(s) 117, 142, 998, 1133
BspANI GGCC 5 cut(s) 5, 57, 200, 936, 1136
BspCNI CTCAG 4 cut(s) 477, 872, 880, 1342
BspDI ATCGAT 1 cut(s) 1223
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 1275
BspPI GGATC 2 cut(s) 440, 1228
BsrBI CCGCTC 1 cut(s) 117
BsrDI GCAATG 1 cut(s) 1156
BsrI ACTGG 3 cut(s) 367, 1040, 1256
BssECI CCNNGG 4 cut(s) 72, 182, 921, 1170
BssMI GATC 6 cut(s) 432, 454, 952, 1189, 1220, 1335
BssT1I CCWWGG 3 cut(s) 72, 182, 921
Bst2UI CCWGG 1 cut(s) 54
Bst4CI ACNGT 3 cut(s) 170, 667, 1285
Bst6I CTCTTC 7 cut(s) 98, 542, 558, 564, 624, 647, 816
BstBAI YACGTR 1 cut(s) 318
BstC8I GCNNGC 2 cut(s) 341, 1147
BstDEI CTNAG 4 cut(s) 464, 859, 888, 1350
BstDSI CCRYGG 1 cut(s) 72
BstEII GGTNACC 1 cut(s) 170
BstF5I GGATG 1 cut(s) 1121
BstFNI CGCG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 772
BstKTI GATC 6 cut(s) 435, 457, 955, 1192, 1223, 1338
BstMAI GTCTC 1 cut(s) 462
BstMBI GATC 6 cut(s) 432, 454, 952, 1189, 1220, 1335
BstMWI GCNNNNNNNGC 4 cut(s) 141, 725, 806, 1142
BstNI CCWGG 1 cut(s) 54
BstPI GGTNACC 1 cut(s) 170
BstSCI CCNGG 2 cut(s) 52, 130
BstSLI GKGCMC 1 cut(s) 420
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 737, 821
BstV2I GAAGAC 1 cut(s) 990
BstX2I RGATCY 1 cut(s) 432
BstYI RGATCY 1 cut(s) 432
Bsu15I ATCGAT 1 cut(s) 1223
Bsu36I CCTNAGG 1 cut(s) 1350
BsuRI GGCC 5 cut(s) 5, 57, 200, 936, 1136
BsuTUI ATCGAT 1 cut(s) 1223
BtgI CCRYGG 1 cut(s) 72
BtgZI GCGATG 1 cut(s) 342
BtsCI GGATG 1 cut(s) 1121
Cac8I GCNNGC 2 cut(s) 341, 1147
CfoI GCGC 1 cut(s) 772
Cfr13I GGNCC 2 cut(s) 935, 1273
ClaI ATCGAT 1 cut(s) 1223
Csp6I GTAC 4 cut(s) 128, 293, 1249, 1281
CspCI CAANNNNNGTGG 2 cut(s) 207, 242
CviAII CATG 5 cut(s) 7, 73, 109, 956, 1126
CviQI GTAC 4 cut(s) 128, 293, 1249, 1281
DdeI CTNAG 4 cut(s) 464, 859, 888, 1350
DpnI GATC 6 cut(s) 434, 456, 954, 1191, 1222, 1337
DpnII GATC 6 cut(s) 432, 454, 952, 1189, 1220, 1335
EaeI YGGCCR 2 cut(s) 3, 55
Eam1104I CTCTTC 7 cut(s) 98, 542, 558, 564, 624, 647, 816
EarI CTCTTC 7 cut(s) 98, 542, 558, 564, 624, 647, 816
EciI GGCGGA 1 cut(s) 1013
Eco130I CCWWGG 3 cut(s) 72, 182, 921
Eco147I AGGCCT 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 1273
Eco57I CTGAAG 1 cut(s) 1098
Eco72I CACGTG 1 cut(s) 318
Eco81I CCTNAGG 1 cut(s) 1350
Eco88I CYCGRG 1 cut(s) 867
Eco91I GGTNACC 1 cut(s) 170
EcoO109I RGGNCCY 2 cut(s) 935, 1273
EcoO65I GGTNACC 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 52
EcoT14I CCWWGG 3 cut(s) 72, 182, 921
EcoT22I ATGCAT 1 cut(s) 595
ErhI CCWWGG 3 cut(s) 72, 182, 921
FaeI CATG 5 cut(s) 10, 76, 112, 959, 1129
FalI AAGNNNNNCTT 6 cut(s) 379, 411, 561, 593, 621, 653
FaqI GGGAC 1 cut(s) 1259
FatI CATG 5 cut(s) 6, 72, 108, 955, 1125
FbaI TGATCA 1 cut(s) 454
FblI GTMKAC 2 cut(s) 505, 948
Fnu4HI GCNGC 4 cut(s) 11, 726, 810, 1134
FokI GGATG 1 cut(s) 1108
Fsp4HI GCNGC 4 cut(s) 11, 726, 810, 1134
FspBI CTAG 3 cut(s) 86, 734, 818
GlaI GCGC 1 cut(s) 771
GluI GCNGC 4 cut(s) 11, 726, 810, 1134
HaeIII GGCC 5 cut(s) 5, 57, 200, 936, 1136
HapII CCGG 4 cut(s) 132, 298, 336, 977
HhaI GCGC 1 cut(s) 772
Hin1II CATG 5 cut(s) 10, 76, 112, 959, 1129
Hin6I GCGC 1 cut(s) 770
HinP1I GCGC 1 cut(s) 770
HinfI GANTC 7 cut(s) 332, 410, 740, 824, 903, 1259, 1331
HpaII CCGG 4 cut(s) 132, 298, 336, 977
HphI GGTGA 4 cut(s) 164, 247, 533, 1385
Hpy166II GTNNAC 5 cut(s) 418, 506, 524, 902, 949
Hpy188I TCNGA 6 cut(s) 467, 706, 790, 862, 1198, 1321
Hpy188III TCNNGA 4 cut(s) 205, 578, 1235, 1349
Hpy8I GTNNAC 5 cut(s) 418, 506, 524, 902, 949
HpyAV CCTTC 4 cut(s) 211, 316, 948, 1112
HpyCH4III ACNGT 3 cut(s) 170, 667, 1285
HpyCH4IV ACGT 4 cut(s) 126, 317, 559, 1086
HpyCH4V TGCA 9 cut(s) 13, 418, 593, 686, 719, 854, 928, 1149, 1185
HpyF10VI GCNNNNNNNGC 4 cut(s) 141, 725, 806, 1142
HpyF3I CTNAG 4 cut(s) 464, 859, 888, 1350
HpySE526I ACGT 4 cut(s) 126, 317, 559, 1086
Hsp92II CATG 5 cut(s) 10, 76, 112, 959, 1129
HspAI GCGC 1 cut(s) 770
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 6 cut(s) 432, 454, 952, 1189, 1220, 1335
LmnI GCTCC 2 cut(s) 622, 1117
Lsp1109I GCAGC 2 cut(s) 737, 821
LweI GCATC 2 cut(s) 787, 1132
MaeI CTAG 3 cut(s) 86, 734, 818
MaeII ACGT 4 cut(s) 126, 317, 559, 1086
MaeIII GTNAC 1 cut(s) 170
MalI GATC 6 cut(s) 434, 456, 954, 1191, 1222, 1337
MbiI CCGCTC 1 cut(s) 117
MboI GATC 6 cut(s) 432, 454, 952, 1189, 1220, 1335
MfeI CAATTG 1 cut(s) 873
MflI RGATCY 1 cut(s) 432
MhlI GDGCHC 1 cut(s) 420
MlsI TGGCCA 2 cut(s) 5, 57
MluCI AATT 5 cut(s) 586, 873, 911, 1339, 1377
MluNI TGGCCA 2 cut(s) 5, 57
MlyI GAGTC 6 cut(s) 326, 404, 833, 897, 1268, 1340
MmeI TCCRAC 4 cut(s) 286, 410, 931, 1308
Mox20I TGGCCA 2 cut(s) 5, 57
Mph1103I ATGCAT 1 cut(s) 595
MroXI GAANNNNTTC 4 cut(s) 87, 573, 1041, 1361
MscI TGGCCA 2 cut(s) 5, 57
MseI TTAA 3 cut(s) 966, 1047, 1062
MslI CAYNNNNRTG 2 cut(s) 748, 832
Msp20I TGGCCA 2 cut(s) 5, 57
MspA1I CMGCKG 2 cut(s) 728, 812
MspI CCGG 4 cut(s) 132, 298, 336, 977
MspR9I CCNGG 2 cut(s) 54, 132
MunI CAATTG 1 cut(s) 873
Mva1269I GAATGC 4 cut(s) 593, 719, 755, 839
MvaI CCWGG 1 cut(s) 54
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 4 cut(s) 141, 725, 806, 1142
NciI CCSGG 1 cut(s) 132
NcoI CCATGG 1 cut(s) 72
NdeII GATC 6 cut(s) 432, 454, 952, 1189, 1220, 1335
NlaIII CATG 5 cut(s) 10, 76, 112, 959, 1129
NlaIV GGNNCC 1 cut(s) 1275
NmeAIII GCCGAG 1 cut(s) 1151
NmuCI GTSAC 1 cut(s) 170
NsiI ATGCAT 1 cut(s) 595
PaeR7I CTCGAG 1 cut(s) 867
PceI AGGCCT 1 cut(s) 200
PctI GAATGC 4 cut(s) 593, 719, 755, 839
PdmI GAANNNNTTC 4 cut(s) 87, 573, 1041, 1361
PfeI GAWTC 1 cut(s) 740
PkrI GCNGC 4 cut(s) 12, 727, 811, 1135
PleI GAGTC 6 cut(s) 326, 404, 832, 897, 1267, 1339
PmaCI CACGTG 1 cut(s) 318
PmlI CACGTG 1 cut(s) 318
PpsI GAGTC 6 cut(s) 326, 404, 832, 897, 1267, 1339
Ppu21I YACGTR 1 cut(s) 318
PpuMI RGGWCCY 1 cut(s) 1273
PshBI ATTAAT 1 cut(s) 1062
Psp5II RGGWCCY 1 cut(s) 1273
Psp6I CCWGG 1 cut(s) 52
PspCI CACGTG 1 cut(s) 318
PspEI GGTNACC 1 cut(s) 170
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 1275
PspPI GGNCC 2 cut(s) 935, 1273
PspPPI RGGWCCY 1 cut(s) 1273
PspXI VCTCGAGB 1 cut(s) 867
PsuI RGATCY 1 cut(s) 432
PvuII CAGCTG 2 cut(s) 728, 812
RsaI GTAC 4 cut(s) 129, 294, 1250, 1282
RsaNI GTAC 4 cut(s) 128, 293, 1249, 1281
RseI CAYNNNNRTG 2 cut(s) 748, 832
SaqAI TTAA 3 cut(s) 966, 1047, 1062
SatI GCNGC 4 cut(s) 11, 726, 810, 1134
Sau3AI GATC 6 cut(s) 432, 454, 952, 1189, 1220, 1335
Sau96I GGNCC 2 cut(s) 935, 1273
ScaI AGTACT 1 cut(s) 1282
SchI GAGTC 6 cut(s) 326, 404, 833, 897, 1268, 1340
ScrFI CCNGG 2 cut(s) 54, 132
SduI GDGCHC 1 cut(s) 420
SfaNI GCATC 2 cut(s) 787, 1132
Sfr274I CTCGAG 1 cut(s) 867
SinI GGWCC 1 cut(s) 1273
SlaI CTCGAG 1 cut(s) 867
SmiMI CAYNNNNRTG 2 cut(s) 748, 832
SmlI CTYRAG 4 cut(s) 101, 226, 638, 867
SmoI CTYRAG 4 cut(s) 101, 226, 638, 867
SpeI ACTAGT 1 cut(s) 85
Sse9I AATT 5 cut(s) 586, 873, 911, 1339, 1377
SseBI AGGCCT 1 cut(s) 200
SsiI CCGC 4 cut(s) 117, 142, 998, 1133
SspI AATATT 1 cut(s) 963
SspMI CTAG 3 cut(s) 86, 734, 818
StuI AGGCCT 1 cut(s) 200
StyD4I CCNGG 2 cut(s) 52, 130
StyI CCWWGG 3 cut(s) 72, 182, 921
TaaI ACNGT 3 cut(s) 170, 667, 1285
TaiI ACGT 4 cut(s) 129, 320, 562, 1089
TaqI TCGA 5 cut(s) 153, 614, 868, 1223, 1334
TasI AATT 5 cut(s) 586, 873, 911, 1339, 1377
TatI WGTACW 1 cut(s) 1280
TauI GCSGC 1 cut(s) 1136
TfiI GAWTC 1 cut(s) 740
Tru1I TTAA 3 cut(s) 966, 1047, 1062
Tru9I TTAA 3 cut(s) 966, 1047, 1062
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 3 cut(s) 10, 725, 809
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 6 cut(s) 96, 664, 732, 792, 930, 1323
TspGWI ACGGA 1 cut(s) 960
VneI GTGCAC 1 cut(s) 416
VpaK11BI GGWCC 1 cut(s) 1273
VspI ATTAAT 1 cut(s) 1062
XapI RAATTY 1 cut(s) 1377
XhoI CTCGAG 1 cut(s) 867
XmiI GTMKAC 2 cut(s) 505, 948
XmnI GAANNNNTTC 4 cut(s) 87, 573, 1041, 1361
XspI CTAG 3 cut(s) 86, 734, 818
ZrmI AGTACT 1 cut(s) 1282
Zsp2I ATGCAT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.