Rroxscaffold_3G00243820
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000076
Physical Location & Seq
Forward (+)
36267569 .. 36268843
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00243820.1

Sequence Viewer

Length: 1275 bp
ATGGAGTTTTCGATGGAGGAGAGCAGACGCAACCACCTTCCTGGCCAGAGGTTCTGCCCCATGGAAGATGAACTAGTTCTCTTCTACCTCAAGCCCATGTTGAGCGGACAGAACGTGCCCGGCAGAAACCGCGTGGTGTTCGATTGCGACCTCTACGGTCACCAAGAACCTTGGGAGATATGGGAGGCCTTCAAGACCAAAAGACCACACGACTTGAGGCTCAACAAGGACATCTACTTCTTCACCCAACACAAGAAGATGAGTTCCACAGACAAGCGTGTGCGCCGGAATGTTGGAAGTGGCACCTGGAAGGGCGACGACTCCGGCAAGCCAGTACGATCTGTTGAAACTGGTCGTGCTGTTGGCTTGAAGAAAAGATATACTTACAAGAACCAAGACTCGGTGCACAACGGCTGTTGGATCTTGCATGAGTTCTACCTTGATCAATCACTCAGAGACAAGAAACAAATGGTGAAAGACTGTGTTCTTTGTCTATTACGAAAGAATGGTGAACCCAAAACCAAGATCGAAAAGAAGAGAAAGCAACGCGAAGAGGAAGAGGTTCTTGAAAACAATTATGCCTTGGATGACTCAAATAGGGAGCAAGAAGAGGTGCTTGAGCCACAAGAGAAGCGGCAACGAACAGTGTCATCCATTGATAATGCACCACTAACAATGCCATCAGAAGATGATGCTGCATTCGCAGCTGAACTAGAAGAGTCATTGGAATGCTTTGAAGATGATAATGCACCCTTAGAAGCTCACGCAATTGGCTTTCAAGGTGAGGAAAATGGTGGACAGCAACCATTAGCAGCCGAGATGCAGGCAGACCCTTCATTCGGGGACGATCATGGGATATTTAATATGCTGCCGGGGGAAGATTTTCTTTGGGTGGAACTGTTAAAAGAAATGGGTATAGAAAAGGACGAACCAGTTCTTAATGGTGAAGGTAGTAATATAGATATGGCTGAAGAAAAAGAAAACAGCACCCTTCTTTATGCTCCCACATCATCCGTGTCTGCGGCCTATGATGGTTGCAATGATATGCCATATTTATCCTCGGGAAAAGGTTGCCTTGATCAATCTGGAAGCAATAATATGTGTGGAGGATCGATTGGCTTTCAGGATGGTGCGTCCTGGGTTGAGTCTTTGGTGGAGGCCCCAAGTACGGTTGAGCAACAAAAGACAGCTGATGAAGATTGTTCAGATTGGTTAGAGTTAATCAATTTTAGTCCTGAGGAGAACAACTTGCTTTGGAGTGACAGGCAATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

424

Amino Acids

48.31

Weight (kDa)

4.65

Isoelectric Point (pI)

61.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 14 - 146 7e-24 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53610 AT1G53620
fragaria_vesca FvH4_3g16890 FvH4_3g16900 FvH4_3g16910 FvH4_3g17012 FvH4_3g18170 FvH4_3g18460 FvH4_3g18930 FvH4_3g18940 FvH4_3g25560 FvH4_4g12410 FvH4_5g05980 FvH4_5g24860 FvH4_5g25360 FvH4_5g25510 FvH4_5g27470 FvH4_5g27620 FvH4_5g27760 FvH4_5g29460 FvH4_6g04191 FvH4_6g39190 FvH4_6g39200 FvH4_6g39580 FvH4_6g39600 FvH4_7g11470
malus_domestica MD00G1154700.v1.1 MD00G1154800.v1.1 MD00G1155000.v1.1 MD03G1255000.v1.1 MD03G1255100.v1.1 MD03G1255200.v1.1 MD03G1255300.v1.1 MD06G1030300.v1.1 MD11G1219300.v1.1 MD11G1264900.v1.1
prunus_persica Prupe.1G575600_v2.0.a1 Prupe.3G065000_v2.0.a1 Prupe.3G111400_v2.0.a1 Prupe.4G151300_v2.0.a1 Prupe.4G151900_v2.0.a1 Prupe.4G153700_v2.0.a1 Prupe.4G154000_v2.0.a1 Prupe.4G230600_v2.0.a1 Prupe.4G230900_v2.0.a1 Prupe.4G231000_v2.0.a1 Prupe.4G246100_v2.0.a1 Prupe.4G255500_v2.0.a1 Prupe.6G133600_v2.0.a1 Prupe.6G134000_v2.0.a1 Prupe.I005300_v2.0.a1
pyrus_communis pycom03g14030 pycom03g15340
rosa_chinensis RchiOBHm_Chr3g0452871 RchiOBHm_Chr5g0056721 RchiOBHm_Chr6g0271921 RchiOBHm_Chr7g0211251 RchiOBHm_Chr7g0231191
rosa_laevigata RLG00000000989 RLG00000001070 RLG00000001076 RLG00000001103 RLG00000001116 RLG00000001118 RLG00000001936 RLG00000001949 RLG00000002610 RLG00000002710 RLG00000003013 RLG00000013562 RLG00000013567 RLG00000018805 RLG00000020667 RLG00000020716 RLG00000020717 RLG00000025564 RLG00000028522 RLG00000030016 RLG00000033070 RLG00000033077 RLG00000033081 RLG00000033086 RLG00000033235 RLG00000033291 RLG00000033337 RLG00000033338 RLG00000033340 RLG00000033345 RLG00000033346 RLG00000033874 RLG00000033885 RLG00000034356 RLG00000034411 RLG00000034414
rosa_multiflora Rmu_co8273153.1_g000001 Rmu_co8288493.1_g000001 Rmu_co8293081.1_g000001 Rmu_co8429197.1_g000001 Rmu_sc0000055.1_g000007 Rmu_sc0000218.1_g000011 Rmu_sc0000533.1_g000061 Rmu_sc0000755.1_g000007 Rmu_sc0000758.1_g000005 Rmu_sc0000898.1_g000011 Rmu_sc0000898.1_g000025 Rmu_sc0001561.1_g000008 Rmu_sc0001571.1_g000004 Rmu_sc0002292.1_g000005 Rmu_sc0002292.1_g000006 Rmu_sc0002308.1_g000010 Rmu_sc0002449.1_g000010 Rmu_sc0002449.1_g000011 Rmu_sc0002536.1_g000004 Rmu_sc0002536.1_g000005 Rmu_sc0002536.1_g000015 Rmu_sc0003238.1_g000014 Rmu_sc0003545.1_g000015 Rmu_sc0003720.1_g000009 Rmu_sc0003878.1_g000040 Rmu_sc0003878.1_g000041 Rmu_sc0003878.1_g000047 Rmu_sc0003878.1_g000048 Rmu_sc0003972.1_g000001 Rmu_sc0004322.1_g000008 Rmu_sc0004379.1_g000014 Rmu_sc0005478.1_g000002 Rmu_sc0006240.1_g000008 Rmu_sc0006847.1_g000022 Rmu_sc0007753.1_g000022 Rmu_sc0007782.1_g000001 Rmu_sc0008328.1_g000002 Rmu_sc0008526.1_g000005 Rmu_sc0008835.1_g000013 Rmu_sc0014005.1_g000009 Rmu_sc0014478.1_g000004 Rmu_sc0015060.1_g000021 Rmu_sc0016364.1_g000001 Rmu_sc0016727.1_g000004 Rmu_sc0020600.1_g000008 Rmu_sc0022743.1_g000003 Rmu_sc0032116.1_g000002 Rmu_sc0033519.1_g000005 Rmu_sc0042823.1_g000001 Rmu_ssc0000134.1_g000011
rosa_roxburghii Rroxscaffold_1G00029360 Rroxscaffold_1G00034880 Rroxscaffold_1G00034930 Rroxscaffold_1G00034970 Rroxscaffold_1G00042100 Rroxscaffold_1G00049130 Rroxscaffold_1G00049660 Rroxscaffold_1G00051410 Rroxscaffold_2G00094840 Rroxscaffold_2G00094850 Rroxscaffold_2G00095300 Rroxscaffold_3G00224990 Rroxscaffold_3G00225050 Rroxscaffold_3G00225080 Rroxscaffold_3G00225360 Rroxscaffold_3G00235370 Rroxscaffold_3G00243820 Rroxscaffold_3G00243860 Rroxscaffold_3G00243920 Rroxscaffold_3G00244920 Rroxscaffold_4G00305330 Rroxscaffold_5G00373100 Rroxscaffold_6G00407840 Rroxscaffold_6G00422000 Rroxscaffold_6G00429880 Rroxscaffold_7G00186180
rosa_rugosa Rorug01G0120600 Rorug01G0127200 Rorug01G0128500 Rorug01G0206000 Rorug02G0251400 Rorug02G0420800 Rorug02G0436800 Rorug02G0441000 Rorug02G0643100 Rorug03G0339200 Rorug04G0168000 Rorug04G0168100 Rorug05G0104500 Rorug05G0105300 Rorug05G0105700 Rorug05G0105800 Rorug05G0118900 Rorug05G0175700 Rorug05G0228200 Rorug05G0229000 Rorug05G0229500 Rorug06G0064300 Rorug07G0124700 Rorug07G0156100 Rorug07G0156700 Rorug07G0158100 Rorug07G0219600 Rorug07G0273400 Rorug07G0291800 Rorug07G0294300 Rorug07G0297400 Rorug07G0297800
rosa_samantha Rh1BG189400 Rh1CG103600 Rh1CG142100 Rh1CG208100 Rh1DG209200 Rh2CG296600 Rh2CG301600 Rh2CG485100 Rh2CG489800 Rh2CG490000 Rh2DG333700 Rh2DG526600 Rh2DG526800 Rh3BG048500 Rh3CG047100 Rh3DG048100 Rh5AG198800 Rh5AG211300 Rh5AG213900 Rh5AG217700 Rh5AG221800 Rh5AG225800 Rh5AG262500 Rh5AG309600 Rh5BG210200 Rh5CG216300 Rh5CG217100 Rh5CG217500 Rh5CG233900 Rh5CG236800 Rh5CG239600 Rh5CG241200 Rh5CG244900 Rh5CG245100 Rh5CG254600 Rh5CG299700 Rh5CG343400 Rh5CG343600 Rh5CG406800 Rh5DG215100 Rh5DG215200 Rh5DG220900 Rh5DG222800 Rh5DG226600 Rh5DG226700 Rh5DG226800 Rh5DG231600 Rh5DG273600 Rh5DG327700 Rh5DG328300 Rh6BG185200 Rh6DG174700 Rh7AG257100 Rh7AG285100 Rh7AG293000 Rh7AG294700 Rh7AG296700 Rh7AG297200 Rh7AG298400 Rh7AG306700 Rh7AG362600 Rh7AG379100 Rh7AG449400 Rh7AG451800 Rh7AG453400 Rh7AG453500 Rh7AG459000 Rh7BG251000 Rh7BG275900 Rh7BG276100 Rh7BG276800 Rh7BG285400 Rh7BG353800 Rh7BG400900 Rh7BG418600 Rh7BG421100 Rh7BG424000 Rh7BG424300 Rh7BG424400 Rh7DG288700
rosa_wichuraiana Rw0G000390 Rw0G010750 Rw0G015930 Rw0G020680 Rw0G023760 Rw1G008930 Rw1G012360 Rw1G019040 Rw2G025060 Rw2G041400 Rw2G041420 Rw3G003610 Rw5G018050 Rw5G018130 Rw5G019340 Rw5G019550 Rw5G020700 Rw5G024510 Rw5G036060 Rw6G015630 Rw7G021960 Rw7G024340 Rw7G024900 Rw7G024940 Rw7G025030 Rw7G025280 Rw7G030800 Rw7G032090 Rw7G037610 Rw7G038010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 302
AccBSI CCGCTC 1 cut(s) 105
AccII CGCG 2 cut(s) 132, 549
AciI CCGC 4 cut(s) 105, 130, 634, 1022
AclWI GGATC 2 cut(s) 428, 1117
AcoI YGGCCR 1 cut(s) 43
AcuI CTGAAG 1 cut(s) 990
AfaI GTAC 2 cut(s) 336, 1168
AfiI CCNNNNNNNGG 3 cut(s) 400, 839, 1168
AgsI TTSAA 6 cut(s) 193, 347, 370, 569, 737, 779
AhlI ACTAGT 1 cut(s) 73
AjnI CCWGG 3 cut(s) 40, 305, 1136
AluBI AGCT 3 cut(s) 707, 761, 1190
AluI AGCT 3 cut(s) 707, 761, 1190
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 1 cut(s) 450
Alw44I GTGCAC 1 cut(s) 404
AlwI GGATC 2 cut(s) 428, 1117
Ama87I CYCGRG 1 cut(s) 1060
AoxI GGCC 4 cut(s) 43, 186, 1023, 1158
ApaLI GTGCAC 1 cut(s) 404
ApeKI GCWGC 4 cut(s) 695, 704, 812, 868
ArsI GACNNNNNNTTYG 2 cut(s) 821, 853
Asp700I GAANNNNTTC 4 cut(s) 75, 561, 882, 933
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 1 cut(s) 1159
AsuC2I CCSGG 2 cut(s) 120, 873
AsuHPI GGTGA 6 cut(s) 152, 235, 484, 521, 794, 956
AvaI CYCGRG 1 cut(s) 1060
AxyI CCTNAGG 1 cut(s) 1236
BaeGI GKGCMC 2 cut(s) 120, 408
BalI TGGCCA 1 cut(s) 45
BanI GGYRCC 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 408
BbvI GCAGC 4 cut(s) 682, 716, 824, 855
BccI CCATC 4 cut(s) 7, 688, 1025, 1121
BceAI ACGGC 1 cut(s) 427
BciT130I CCWGG 3 cut(s) 42, 307, 1138
BclI TGATCA 2 cut(s) 442, 1078
BcnI CCSGG 2 cut(s) 120, 873
BcoDI GTCTC 1 cut(s) 450
BcuI ACTAGT 1 cut(s) 73
BfaI CTAG 2 cut(s) 74, 713
BisI GCNGC 6 cut(s) 635, 696, 705, 813, 869, 1023
BlsI GCNGC 6 cut(s) 636, 697, 706, 814, 870, 1024
Bme1390I CCNGG 5 cut(s) 42, 120, 307, 873, 1138
BmeT110I CYCGRG 1 cut(s) 1060
BmgT120I GGNCC 1 cut(s) 1159
BmiI GGNNCC 2 cut(s) 304, 1161
BmrFI CCNGG 5 cut(s) 42, 120, 307, 873, 1138
BmsI GCATC 2 cut(s) 682, 810
BpuEI CTTGAG 3 cut(s) 74, 235, 638
BpuMI CCSGG 2 cut(s) 120, 873
Bsa29I ATCGAT 1 cut(s) 1112
BsaJI CCNNGG 6 cut(s) 60, 170, 582, 872, 1059, 1137
Bsc4I CCNNNNNNNGG 3 cut(s) 400, 839, 1168
Bse1I ACTGG 3 cut(s) 332, 355, 932
Bse21I CCTNAGG 1 cut(s) 1236
Bse3DI GCAATG 2 cut(s) 1045, 1274
BseBI CCWGG 3 cut(s) 42, 307, 1138
BseCI ATCGAT 1 cut(s) 1112
BseDI CCNNGG 6 cut(s) 60, 170, 582, 872, 1059, 1137
BseGI GGATG 4 cut(s) 592, 650, 1010, 1132
BseLI CCNNNNNNNGG 3 cut(s) 400, 839, 1168
BseMI GCAATG 2 cut(s) 1045, 1274
BseMII CTCAG 2 cut(s) 466, 1227
BseNI ACTGG 3 cut(s) 332, 355, 932
BseRI GAGGAG 2 cut(s) 32, 1253
BseSI GKGCMC 2 cut(s) 120, 408
BseXI GCAGC 4 cut(s) 682, 716, 824, 855
Bsh1236I CGCG 2 cut(s) 132, 549
BshFI GGCC 4 cut(s) 45, 188, 1025, 1160
BshNI GGYRCC 1 cut(s) 302
BshVI ATCGAT 1 cut(s) 1112
BsiHKAI GWGCWC 1 cut(s) 408
BsiHKCI CYCGRG 1 cut(s) 1060
BsiSI CCGG 4 cut(s) 120, 286, 324, 872
BslFI GGGAC 1 cut(s) 857
BslI CCNNNNNNNGG 3 cut(s) 400, 839, 1168
BsmAI GTCTC 1 cut(s) 450
BsmFI GGGAC 1 cut(s) 857
BsmI GAATGC 2 cut(s) 698, 734
BsnI GGCC 4 cut(s) 45, 188, 1025, 1160
BsoBI CYCGRG 1 cut(s) 1060
Bsp1286I GDGCHC 2 cut(s) 120, 408
Bsp143I GATC 7 cut(s) 338, 420, 442, 525, 847, 1078, 1109
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 4 cut(s) 105, 130, 634, 1022
BspANI GGCC 4 cut(s) 45, 188, 1025, 1160
BspCNI CTCAG 2 cut(s) 465, 1228
BspDI ATCGAT 1 cut(s) 1112
BspFNI CGCG 2 cut(s) 132, 549
BspLI GGNNCC 2 cut(s) 304, 1161
BspPI GGATC 2 cut(s) 428, 1117
BspT107I GGYRCC 1 cut(s) 302
BsrBI CCGCTC 1 cut(s) 105
BsrDI GCAATG 2 cut(s) 1045, 1274
BsrI ACTGG 3 cut(s) 332, 355, 932
BssECI CCNNGG 6 cut(s) 60, 170, 582, 872, 1059, 1137
BssMI GATC 7 cut(s) 338, 420, 442, 525, 847, 1078, 1109
BssT1I CCWWGG 3 cut(s) 60, 170, 582
Bst2UI CCWGG 3 cut(s) 42, 307, 1138
Bst4CI ACNGT 5 cut(s) 158, 482, 646, 900, 1171
Bst6I CTCTTC 6 cut(s) 86, 530, 546, 552, 603, 711
BstC8I GCNNGC 2 cut(s) 329, 825
BstDEI CTNAG 3 cut(s) 452, 754, 1236
BstDSI CCRYGG 1 cut(s) 60
BstEII GGTNACC 1 cut(s) 158
BstF5I GGATG 4 cut(s) 592, 650, 1010, 1132
BstFNI CGCG 2 cut(s) 132, 549
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 7 cut(s) 341, 423, 445, 528, 850, 1081, 1112
BstMAI GTCTC 1 cut(s) 450
BstMBI GATC 7 cut(s) 338, 420, 442, 525, 847, 1078, 1109
BstMWI GCNNNNNNNGC 3 cut(s) 129, 701, 704
BstNI CCWGG 3 cut(s) 42, 307, 1138
BstPI GGTNACC 1 cut(s) 158
BstSCI CCNGG 5 cut(s) 40, 118, 305, 871, 1136
BstSLI GKGCMC 2 cut(s) 120, 408
BstUI CGCG 2 cut(s) 132, 549
BstV1I GCAGC 4 cut(s) 682, 716, 824, 855
BstX2I RGATCY 1 cut(s) 420
BstXI CCANNNNNNTGG 1 cut(s) 41
BstYI RGATCY 1 cut(s) 420
Bsu15I ATCGAT 1 cut(s) 1112
Bsu36I CCTNAGG 1 cut(s) 1236
BsuRI GGCC 4 cut(s) 45, 188, 1025, 1160
BsuTUI ATCGAT 1 cut(s) 1112
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 4 cut(s) 592, 650, 1010, 1132
BtsIMutI CAGTG 1 cut(s) 651
Cac8I GCNNGC 2 cut(s) 329, 825
CfoI GCGC 1 cut(s) 285
Cfr13I GGNCC 1 cut(s) 1159
ClaI ATCGAT 1 cut(s) 1112
CseI GACGC 2 cut(s) 36, 1122
Csp6I GTAC 2 cut(s) 335, 1167
CspCI CAANNNNNGTGG 2 cut(s) 195, 230
CviAII CATG 4 cut(s) 61, 97, 428, 851
CviQI GTAC 2 cut(s) 335, 1167
DdeI CTNAG 3 cut(s) 452, 754, 1236
DpnI GATC 7 cut(s) 340, 422, 444, 527, 849, 1080, 1111
DpnII GATC 7 cut(s) 338, 420, 442, 525, 847, 1078, 1109
EaeI YGGCCR 1 cut(s) 43
Eam1104I CTCTTC 6 cut(s) 86, 530, 546, 552, 603, 711
EarI CTCTTC 6 cut(s) 86, 530, 546, 552, 603, 711
Eco130I CCWWGG 3 cut(s) 60, 170, 582
Eco147I AGGCCT 1 cut(s) 188
Eco57I CTGAAG 1 cut(s) 990
Eco81I CCTNAGG 1 cut(s) 1236
Eco88I CYCGRG 1 cut(s) 1060
Eco91I GGTNACC 1 cut(s) 158
EcoO109I RGGNCCY 1 cut(s) 1159
EcoO65I GGTNACC 1 cut(s) 158
EcoRII CCWGG 3 cut(s) 40, 305, 1136
EcoT14I CCWWGG 3 cut(s) 60, 170, 582
ErhI CCWWGG 3 cut(s) 60, 170, 582
FaeI CATG 4 cut(s) 64, 100, 431, 854
FaqI GGGAC 1 cut(s) 857
FatI CATG 4 cut(s) 60, 96, 427, 850
FbaI TGATCA 2 cut(s) 442, 1078
Fnu4HI GCNGC 6 cut(s) 635, 696, 705, 813, 869, 1023
FokI GGATG 4 cut(s) 599, 637, 997, 1139
Fsp4HI GCNGC 6 cut(s) 635, 696, 705, 813, 869, 1023
FspBI CTAG 2 cut(s) 74, 713
GlaI GCGC 1 cut(s) 284
GluI GCNGC 6 cut(s) 635, 696, 705, 813, 869, 1023
HaeIII GGCC 4 cut(s) 45, 188, 1025, 1160
HapII CCGG 4 cut(s) 120, 286, 324, 872
HgaI GACGC 2 cut(s) 36, 1122
HhaI GCGC 1 cut(s) 285
Hin1II CATG 4 cut(s) 64, 100, 431, 854
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HinfI GANTC 5 cut(s) 320, 398, 590, 719, 1145
HpaII CCGG 4 cut(s) 120, 286, 324, 872
HphI GGTGA 6 cut(s) 152, 235, 484, 521, 794, 956
Hpy166II GTNNAC 3 cut(s) 406, 512, 797
Hpy188I TCNGA 3 cut(s) 455, 685, 1207
Hpy188III TCNNGA 6 cut(s) 193, 566, 1062, 1086, 1124, 1235
Hpy8I GTNNAC 3 cut(s) 406, 512, 797
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 6 cut(s) 47, 199, 304, 843, 941, 1001
HpyCH4III ACNGT 5 cut(s) 158, 482, 646, 900, 1171
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 7 cut(s) 406, 427, 665, 698, 749, 823, 1038
HpyF10VI GCNNNNNNNGC 3 cut(s) 129, 701, 704
HpyF3I CTNAG 3 cut(s) 452, 754, 1236
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 4 cut(s) 64, 100, 431, 854
HspAI GCGC 1 cut(s) 283
Ksp22I TGATCA 2 cut(s) 442, 1078
Kzo9I GATC 7 cut(s) 338, 420, 442, 525, 847, 1078, 1109
LmnI GCTCC 2 cut(s) 601, 1006
Lsp1109I GCAGC 4 cut(s) 682, 716, 824, 855
LweI GCATC 2 cut(s) 682, 810
MaeI CTAG 2 cut(s) 74, 713
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 2 cut(s) 158, 1259
MalI GATC 7 cut(s) 340, 422, 444, 527, 849, 1080, 1111
MbiI CCGCTC 1 cut(s) 105
MboI GATC 7 cut(s) 338, 420, 442, 525, 847, 1078, 1109
MfeI CAATTG 1 cut(s) 768
MflI RGATCY 1 cut(s) 420
MhlI GDGCHC 2 cut(s) 120, 408
MlsI TGGCCA 1 cut(s) 45
MluCI AATT 3 cut(s) 574, 768, 1225
MluNI TGGCCA 1 cut(s) 45
MlyI GAGTC 5 cut(s) 314, 392, 584, 728, 1154
MmeI TCCRAC 2 cut(s) 274, 398
Mox20I TGGCCA 1 cut(s) 45
MroXI GAANNNNTTC 4 cut(s) 75, 561, 882, 933
MscI TGGCCA 1 cut(s) 45
MseI TTAA 4 cut(s) 861, 902, 939, 1220
MslI CAYNNNNRTG 1 cut(s) 727
Msp20I TGGCCA 1 cut(s) 45
MspA1I CMGCKG 2 cut(s) 707, 1190
MspI CCGG 4 cut(s) 120, 286, 324, 872
MspR9I CCNGG 5 cut(s) 42, 120, 307, 873, 1138
MunI CAATTG 1 cut(s) 768
Mva1269I GAATGC 2 cut(s) 698, 734
MvaI CCWGG 3 cut(s) 42, 307, 1138
MvnI CGCG 2 cut(s) 132, 549
MwoI GCNNNNNNNGC 3 cut(s) 129, 701, 704
NciI CCSGG 2 cut(s) 120, 873
NcoI CCATGG 1 cut(s) 60
NdeII GATC 7 cut(s) 338, 420, 442, 525, 847, 1078, 1109
NlaIII CATG 4 cut(s) 64, 100, 431, 854
NlaIV GGNNCC 2 cut(s) 304, 1161
NmeAIII GCCGAG 1 cut(s) 841
NmuCI GTSAC 2 cut(s) 158, 1259
PceI AGGCCT 1 cut(s) 188
PctI GAATGC 2 cut(s) 698, 734
PdmI GAANNNNTTC 4 cut(s) 75, 561, 882, 933
PkrI GCNGC 6 cut(s) 636, 697, 706, 814, 870, 1024
PleI GAGTC 5 cut(s) 314, 392, 584, 727, 1153
PpsI GAGTC 5 cut(s) 314, 392, 584, 727, 1153
Psp6I CCWGG 3 cut(s) 40, 305, 1136
PspEI GGTNACC 1 cut(s) 158
PspGI CCWGG 3 cut(s) 40, 305, 1136
PspN4I GGNNCC 2 cut(s) 304, 1161
PspPI GGNCC 1 cut(s) 1159
PsuI RGATCY 1 cut(s) 420
PvuII CAGCTG 2 cut(s) 707, 1190
RsaI GTAC 2 cut(s) 336, 1168
RsaNI GTAC 2 cut(s) 335, 1167
RseI CAYNNNNRTG 1 cut(s) 727
SaqAI TTAA 4 cut(s) 861, 902, 939, 1220
SatI GCNGC 6 cut(s) 635, 696, 705, 813, 869, 1023
Sau3AI GATC 7 cut(s) 338, 420, 442, 525, 847, 1078, 1109
Sau96I GGNCC 1 cut(s) 1159
SchI GAGTC 5 cut(s) 314, 392, 584, 728, 1154
ScrFI CCNGG 5 cut(s) 42, 120, 307, 873, 1138
SduI GDGCHC 2 cut(s) 120, 408
SfaNI GCATC 2 cut(s) 682, 810
SmiMI CAYNNNNRTG 1 cut(s) 727
SmlI CTYRAG 3 cut(s) 89, 214, 617
SmoI CTYRAG 3 cut(s) 89, 214, 617
SpeI ACTAGT 1 cut(s) 73
Sse9I AATT 3 cut(s) 574, 768, 1225
SseBI AGGCCT 1 cut(s) 188
SsiI CCGC 4 cut(s) 105, 130, 634, 1022
SspMI CTAG 2 cut(s) 74, 713
StuI AGGCCT 1 cut(s) 188
StyD4I CCNGG 5 cut(s) 40, 118, 305, 871, 1136
StyI CCWWGG 3 cut(s) 60, 170, 582
TaaI ACNGT 5 cut(s) 158, 482, 646, 900, 1171
TaiI ACGT 1 cut(s) 117
TaqI TCGA 4 cut(s) 11, 141, 528, 1112
TasI AATT 3 cut(s) 574, 768, 1225
TauI GCSGC 2 cut(s) 637, 1025
Tru1I TTAA 4 cut(s) 861, 902, 939, 1220
Tru9I TTAA 4 cut(s) 861, 902, 939, 1220
TscAI CASTG 1 cut(s) 651
TseFI GTSAC 2 cut(s) 158, 1259
TseI GCWGC 4 cut(s) 695, 704, 812, 868
Tsp45I GTSAC 2 cut(s) 158, 1259
TspDTI ATGAA 3 cut(s) 84, 825, 1209
TspGWI ACGGA 1 cut(s) 1003
TspRI CASTG 1 cut(s) 651
VneI GTGCAC 1 cut(s) 404
XmnI GAANNNNTTC 4 cut(s) 75, 561, 882, 933
XspI CTAG 2 cut(s) 74, 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.