Rh3BG048500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Reverse (-)
3218190 .. 3218591
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG048500.1

Sequence Viewer

Length: 402 bp
ATGACTCAGGAAACCTATGCCGAGCTGAATGACATTAATCCACCATTAGAGGACAATGATGCCTTCAACACCAGCACTGATCATGTTAGCAATGCAAGCAAATCTCTTCACACATCTCAACCACTGCCATCATATCCTAAATTAGAGGTTATGGCATGTGAAACAAATGTGGAGCTTACTGATCATGACAATGTACACGACTATCCGCTTTATGAGGATTATGTGTTCAACTCGATCAATGTTGGTGATACTCATCGACTGCAGCAGCAGTCTTTCAGAACACAGACTGAGACACTAAAGGGTGGATCATACCCTCCATATTCTTATCCCAGCTTCCAAAGGTCCAGTAACAAAGTCGGAGAGAGCAGTGCTAGTGCCGTGGCTAAGGCCGGGAGACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.86

Weight (kDa)

4.78

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53610 AT1G53620
fragaria_vesca FvH4_3g16890 FvH4_3g16900 FvH4_3g16910 FvH4_3g17012 FvH4_3g18170 FvH4_3g18460 FvH4_3g18930 FvH4_3g18940 FvH4_3g25560 FvH4_4g12410 FvH4_5g05980 FvH4_5g24860 FvH4_5g25360 FvH4_5g25510 FvH4_5g27470 FvH4_5g27620 FvH4_5g27760 FvH4_5g29460 FvH4_6g04191 FvH4_6g39190 FvH4_6g39200 FvH4_6g39580 FvH4_6g39600 FvH4_7g11470
malus_domestica MD00G1154700.v1.1 MD00G1154800.v1.1 MD00G1155000.v1.1 MD03G1255000.v1.1 MD03G1255100.v1.1 MD03G1255200.v1.1 MD03G1255300.v1.1 MD06G1030300.v1.1 MD11G1219300.v1.1 MD11G1264900.v1.1
prunus_persica Prupe.1G575600_v2.0.a1 Prupe.3G065000_v2.0.a1 Prupe.3G111400_v2.0.a1 Prupe.4G151300_v2.0.a1 Prupe.4G151900_v2.0.a1 Prupe.4G153700_v2.0.a1 Prupe.4G154000_v2.0.a1 Prupe.4G230600_v2.0.a1 Prupe.4G230900_v2.0.a1 Prupe.4G231000_v2.0.a1 Prupe.4G246100_v2.0.a1 Prupe.4G255500_v2.0.a1 Prupe.6G133600_v2.0.a1 Prupe.6G134000_v2.0.a1 Prupe.I005300_v2.0.a1
pyrus_communis pycom03g14030 pycom03g15340
rosa_chinensis RchiOBHm_Chr3g0452871 RchiOBHm_Chr5g0056721 RchiOBHm_Chr6g0271921 RchiOBHm_Chr7g0211251 RchiOBHm_Chr7g0231191
rosa_laevigata RLG00000000989 RLG00000001070 RLG00000001076 RLG00000001103 RLG00000001116 RLG00000001118 RLG00000001936 RLG00000001949 RLG00000002610 RLG00000002710 RLG00000003013 RLG00000013562 RLG00000013567 RLG00000018805 RLG00000020667 RLG00000020716 RLG00000020717 RLG00000025564 RLG00000028522 RLG00000030016 RLG00000033070 RLG00000033077 RLG00000033081 RLG00000033086 RLG00000033235 RLG00000033291 RLG00000033337 RLG00000033338 RLG00000033340 RLG00000033345 RLG00000033346 RLG00000033874 RLG00000033885 RLG00000034356 RLG00000034411 RLG00000034414
rosa_multiflora Rmu_co8273153.1_g000001 Rmu_co8288493.1_g000001 Rmu_co8293081.1_g000001 Rmu_co8429197.1_g000001 Rmu_sc0000055.1_g000007 Rmu_sc0000218.1_g000011 Rmu_sc0000533.1_g000061 Rmu_sc0000755.1_g000007 Rmu_sc0000758.1_g000005 Rmu_sc0000898.1_g000011 Rmu_sc0000898.1_g000025 Rmu_sc0001561.1_g000008 Rmu_sc0001571.1_g000004 Rmu_sc0002292.1_g000005 Rmu_sc0002292.1_g000006 Rmu_sc0002308.1_g000010 Rmu_sc0002449.1_g000010 Rmu_sc0002449.1_g000011 Rmu_sc0002536.1_g000004 Rmu_sc0002536.1_g000005 Rmu_sc0002536.1_g000015 Rmu_sc0003238.1_g000014 Rmu_sc0003545.1_g000015 Rmu_sc0003720.1_g000009 Rmu_sc0003878.1_g000040 Rmu_sc0003878.1_g000041 Rmu_sc0003878.1_g000047 Rmu_sc0003878.1_g000048 Rmu_sc0003972.1_g000001 Rmu_sc0004322.1_g000008 Rmu_sc0004379.1_g000014 Rmu_sc0005478.1_g000002 Rmu_sc0006240.1_g000008 Rmu_sc0006847.1_g000022 Rmu_sc0007753.1_g000022 Rmu_sc0007782.1_g000001 Rmu_sc0008328.1_g000002 Rmu_sc0008526.1_g000005 Rmu_sc0008835.1_g000013 Rmu_sc0014005.1_g000009 Rmu_sc0014478.1_g000004 Rmu_sc0015060.1_g000021 Rmu_sc0016364.1_g000001 Rmu_sc0016727.1_g000004 Rmu_sc0020600.1_g000008 Rmu_sc0022743.1_g000003 Rmu_sc0032116.1_g000002 Rmu_sc0033519.1_g000005 Rmu_sc0042823.1_g000001 Rmu_ssc0000134.1_g000011
rosa_roxburghii Rroxscaffold_1G00029360 Rroxscaffold_1G00034880 Rroxscaffold_1G00034930 Rroxscaffold_1G00034970 Rroxscaffold_1G00042100 Rroxscaffold_1G00049130 Rroxscaffold_1G00049660 Rroxscaffold_1G00051410 Rroxscaffold_2G00094840 Rroxscaffold_2G00094850 Rroxscaffold_2G00095300 Rroxscaffold_3G00224990 Rroxscaffold_3G00225050 Rroxscaffold_3G00225080 Rroxscaffold_3G00225360 Rroxscaffold_3G00235370 Rroxscaffold_3G00243820 Rroxscaffold_3G00243860 Rroxscaffold_3G00243920 Rroxscaffold_3G00244920 Rroxscaffold_4G00305330 Rroxscaffold_5G00373100 Rroxscaffold_6G00407840 Rroxscaffold_6G00422000 Rroxscaffold_6G00429880 Rroxscaffold_7G00186180
rosa_rugosa Rorug01G0120600 Rorug01G0127200 Rorug01G0128500 Rorug01G0206000 Rorug02G0251400 Rorug02G0420800 Rorug02G0436800 Rorug02G0441000 Rorug02G0643100 Rorug03G0339200 Rorug04G0168000 Rorug04G0168100 Rorug05G0104500 Rorug05G0105300 Rorug05G0105700 Rorug05G0105800 Rorug05G0118900 Rorug05G0175700 Rorug05G0228200 Rorug05G0229000 Rorug05G0229500 Rorug06G0064300 Rorug07G0124700 Rorug07G0156100 Rorug07G0156700 Rorug07G0158100 Rorug07G0219600 Rorug07G0273400 Rorug07G0291800 Rorug07G0294300 Rorug07G0297400 Rorug07G0297800
rosa_samantha Rh1BG189400 Rh1CG103600 Rh1CG142100 Rh1CG208100 Rh1DG209200 Rh2CG296600 Rh2CG301600 Rh2CG485100 Rh2CG489800 Rh2CG490000 Rh2DG333700 Rh2DG526600 Rh2DG526800 Rh3BG048500 Rh3CG047100 Rh3DG048100 Rh5AG198800 Rh5AG211300 Rh5AG213900 Rh5AG217700 Rh5AG221800 Rh5AG225800 Rh5AG262500 Rh5AG309600 Rh5BG210200 Rh5CG216300 Rh5CG217100 Rh5CG217500 Rh5CG233900 Rh5CG236800 Rh5CG239600 Rh5CG241200 Rh5CG244900 Rh5CG245100 Rh5CG254600 Rh5CG299700 Rh5CG343400 Rh5CG343600 Rh5CG406800 Rh5DG215100 Rh5DG215200 Rh5DG220900 Rh5DG222800 Rh5DG226600 Rh5DG226700 Rh5DG226800 Rh5DG231600 Rh5DG273600 Rh5DG327700 Rh5DG328300 Rh6BG185200 Rh6DG174700 Rh7AG257100 Rh7AG285100 Rh7AG293000 Rh7AG294700 Rh7AG296700 Rh7AG297200 Rh7AG298400 Rh7AG306700 Rh7AG362600 Rh7AG379100 Rh7AG449400 Rh7AG451800 Rh7AG453400 Rh7AG453500 Rh7AG459000 Rh7BG251000 Rh7BG275900 Rh7BG276100 Rh7BG276800 Rh7BG285400 Rh7BG353800 Rh7BG400900 Rh7BG418600 Rh7BG421100 Rh7BG424000 Rh7BG424300 Rh7BG424400 Rh7DG288700
rosa_wichuraiana Rw0G000390 Rw0G010750 Rw0G015930 Rw0G020680 Rw0G023760 Rw1G008930 Rw1G012360 Rw1G019040 Rw2G025060 Rw2G041400 Rw2G041420 Rw3G003610 Rw5G018050 Rw5G018130 Rw5G019340 Rw5G019550 Rw5G020700 Rw5G024510 Rw5G036060 Rw6G015630 Rw7G021960 Rw7G024340 Rw7G024900 Rw7G024940 Rw7G025030 Rw7G025280 Rw7G030800 Rw7G032090 Rw7G037610 Rw7G038010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 206
AclWI GGATC 1 cut(s) 313
AfaI GTAC 1 cut(s) 195
AgsI TTSAA 2 cut(s) 67, 229
AloI GAACNNNNNNTCC 2 cut(s) 209, 241
AluBI AGCT 3 cut(s) 25, 175, 333
AluI AGCT 3 cut(s) 25, 175, 333
Alw26I GTCTC 2 cut(s) 284, 388
AlwI GGATC 1 cut(s) 313
AoxI GGCC 1 cut(s) 387
ApeKI GCWGC 2 cut(s) 262, 265
AseI ATTAAT 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 342
AsuC2I CCSGG 1 cut(s) 391
AsuHPI GGTGA 1 cut(s) 257
AvaII GGWCC 1 cut(s) 342
BbvI GCAGC 2 cut(s) 274, 277
BccI CCATC 1 cut(s) 136
BceAI ACGGC 1 cut(s) 362
BclI TGATCA 2 cut(s) 79, 181
BcnI CCSGG 1 cut(s) 391
BcoDI GTCTC 2 cut(s) 284, 388
BfaI CTAG 1 cut(s) 372
BfmI CTRYAG 1 cut(s) 260
BisI GCNGC 2 cut(s) 263, 266
BlsI GCNGC 2 cut(s) 264, 267
Bme1390I CCNGG 1 cut(s) 391
Bme18I GGWCC 1 cut(s) 342
BmgT120I GGNCC 1 cut(s) 342
BmrFI CCNGG 1 cut(s) 391
BmsI GCATC 1 cut(s) 49
Bpu10I CCTNAGC 1 cut(s) 384
BpuMI CCSGG 1 cut(s) 391
BsaBI GATNNNNATC 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 378
Bse1I ACTGG 1 cut(s) 345
Bse3DI GCAATG 1 cut(s) 97
Bse8I GATNNNNATC 1 cut(s) 252
BseDI CCNNGG 1 cut(s) 378
BseJI GATNNNNATC 1 cut(s) 252
BseMI GCAATG 1 cut(s) 97
BseMII CTCAG 2 cut(s) 20, 279
BseNI ACTGG 1 cut(s) 345
BseXI GCAGC 2 cut(s) 274, 277
BseYI CCCAGC 1 cut(s) 329
BshFI GGCC 1 cut(s) 389
BsiSI CCGG 1 cut(s) 390
BsmAI GTCTC 2 cut(s) 284, 388
BsnI GGCC 1 cut(s) 389
Bsp1407I TGTACA 1 cut(s) 193
Bsp143I GATC 4 cut(s) 79, 181, 234, 305
BspACI CCGC 1 cut(s) 206
BspANI GGCC 1 cut(s) 389
BspCNI CTCAG 2 cut(s) 19, 280
BspHI TCATGA 1 cut(s) 184
BspMAI CTGCAG 1 cut(s) 264
BspPI GGATC 1 cut(s) 313
BsrDI GCAATG 1 cut(s) 97
BsrGI TGTACA 1 cut(s) 193
BsrI ACTGG 1 cut(s) 345
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 4 cut(s) 79, 181, 234, 305
Bst6I CTCTTC 1 cut(s) 111
BstAUI TGTACA 1 cut(s) 193
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 3 cut(s) 6, 288, 384
BstDSI CCRYGG 1 cut(s) 378
BstKTI GATC 4 cut(s) 82, 184, 237, 308
BstMAI GTCTC 2 cut(s) 284, 388
BstMBI GATC 4 cut(s) 79, 181, 234, 305
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstNSI RCATGY 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 389
BstSFI CTRYAG 1 cut(s) 260
BstV1I GCAGC 2 cut(s) 274, 277
BsuRI GGCC 1 cut(s) 389
BtgI CCRYGG 1 cut(s) 378
BtsI GCAGTG 2 cut(s) 122, 373
BtsIMutI CAGTG 3 cut(s) 75, 122, 373
Cac8I GCNNGC 1 cut(s) 97
CciI TCATGA 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 342
Csp6I GTAC 1 cut(s) 194
CviAII CATG 3 cut(s) 83, 156, 185
CviJI RGCY 5 cut(s) 25, 175, 333, 383, 389
CviKI_1 RGCY 5 cut(s) 25, 175, 333, 383, 389
CviQI GTAC 1 cut(s) 194
DdeI CTNAG 3 cut(s) 6, 288, 384
DpnI GATC 4 cut(s) 81, 183, 236, 307
DpnII GATC 4 cut(s) 79, 181, 234, 305
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 342
FaeI CATG 3 cut(s) 86, 159, 188
FatI CATG 3 cut(s) 82, 155, 184
FbaI TGATCA 2 cut(s) 79, 181
Fnu4HI GCNGC 2 cut(s) 263, 266
Fsp4HI GCNGC 2 cut(s) 263, 266
FspBI CTAG 1 cut(s) 372
GluI GCNGC 2 cut(s) 263, 266
GsaI CCCAGC 1 cut(s) 333
HaeIII GGCC 1 cut(s) 389
HapII CCGG 1 cut(s) 390
Hin1II CATG 3 cut(s) 86, 159, 188
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 390
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 2 cut(s) 278, 359
Hpy188III TCNNGA 2 cut(s) 8, 185
Hpy8I GTNNAC 1 cut(s) 196
HpyAV CCTTC 1 cut(s) 73
HpyCH4V TGCA 2 cut(s) 95, 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpyF3I CTNAG 3 cut(s) 6, 288, 384
Hsp92II CATG 3 cut(s) 86, 159, 188
Ksp22I TGATCA 2 cut(s) 79, 181
Kzo9I GATC 4 cut(s) 79, 181, 234, 305
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 3 cut(s) 85, 343, 358
Lsp1109I GCAGC 2 cut(s) 274, 277
LweI GCATC 1 cut(s) 49
MaeI CTAG 1 cut(s) 372
MaeIII GTNAC 1 cut(s) 347
MalI GATC 4 cut(s) 81, 183, 236, 307
MboI GATC 4 cut(s) 79, 181, 234, 305
MboII GAAGA 1 cut(s) 98
MluCI AATT 1 cut(s) 140
MmeI TCCRAC 1 cut(s) 337
MnlI CCTC 4 cut(s) 43, 139, 208, 324
MseI TTAA 1 cut(s) 36
MslI CAYNNNNRTG 1 cut(s) 189
MspI CCGG 1 cut(s) 390
MspR9I CCNGG 1 cut(s) 391
MwoI GCNNNNNNNGC 1 cut(s) 96
NciI CCSGG 1 cut(s) 391
NdeII GATC 4 cut(s) 79, 181, 234, 305
NlaIII CATG 3 cut(s) 86, 159, 188
NmeAIII GCCGAG 1 cut(s) 46
NspI RCATGY 1 cut(s) 159
PagI TCATGA 1 cut(s) 184
PkrI GCNGC 2 cut(s) 264, 267
PshBI ATTAAT 1 cut(s) 36
PspFI CCCAGC 1 cut(s) 329
PspPI GGNCC 1 cut(s) 342
PstI CTGCAG 1 cut(s) 264
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 189
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 2 cut(s) 263, 266
Sau3AI GATC 4 cut(s) 79, 181, 234, 305
Sau96I GGNCC 1 cut(s) 342
ScrFI CCNGG 1 cut(s) 391
SetI ASST 6 cut(s) 17, 27, 150, 177, 335, 344
SfaNI GCATC 1 cut(s) 49
SfcI CTRYAG 1 cut(s) 260
SinI GGWCC 1 cut(s) 342
SmiMI CAYNNNNRTG 1 cut(s) 189
Sse9I AATT 1 cut(s) 140
SsiI CCGC 1 cut(s) 206
SspMI CTAG 1 cut(s) 372
StyD4I CCNGG 1 cut(s) 389
TaqI TCGA 2 cut(s) 233, 256
TasI AATT 1 cut(s) 140
TatI WGTACW 1 cut(s) 193
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 3 cut(s) 82, 129, 373
TseI GCWGC 2 cut(s) 262, 265
TspRI CASTG 3 cut(s) 82, 129, 373
VpaK11BI GGWCC 1 cut(s) 342
VspI ATTAAT 1 cut(s) 36
XceI RCATGY 1 cut(s) 159
XspI CTAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.