FvH4_4g12410
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000076
Physical Location & Seq
Reverse (-)
16104370 .. 16105372
1003 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g12410.t1

Sequence Viewer

Length: 693 bp
ATGTGCGCTTCGTGTCCGTCCGTACAAAATCCCATGGCAGTTGATGATGATCTTCCTCCGGGCTACAAGTTTAGGCCAGACAAAGAACAACTCCTTGTTCATTATCTTCGTCCCAAACTCGACGGAGAAGACTTTGCCCAAGAGCTTGTCCCTTTCTGCGATCTGTATGGAAAAAAAGAACCATGGCAGATATGGAATGATTATTTCCAAGAATTATCAGCGACAGACAAAGAAAGGACAGACCTCTACTTCTTCACCCAGCTAAAGACCAAGACTCCAAAGGGCAAGCACATAAAACGAACAGTCGGCAGCGGCACCTGGAAAGGCGAAGACGCCCCCAAAGAAGTACTTGCGGCGTCTCAAAGGGTTATTGGCAAGAGAAGAAGATTTCGCTACGGAAACGACAAGGACTCGGCACAAAACGATCGCTGGCTCATGCACGAGTTTGAACTTGATGCATCTTTATTGAGAAACAAACGTAAAGCGAAAGACTACGTTCTTTGTATTGTTAGAAAGAAAAGTAGATCGGTCAAAAAGAATTCAGAAGATCAAGAAGGAGATGAGACGAGTTGCGACGGTGGTGATGATCAACAAGATGGAGACCTTCCTGAGGCTAAGAAAAATAATGATCATAAAGATTCAGAGACAGTGAGCTTAGAGGAGATGGAGAACTTACTGATGAGTGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

231

Amino Acids

26.59

Weight (kDa)

5.43

Isoelectric Point (pI)

55.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 19 - 151 3.1e-28 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53610 AT1G53620
fragaria_vesca FvH4_3g16890 FvH4_3g16900 FvH4_3g16910 FvH4_3g17012 FvH4_3g18170 FvH4_3g18460 FvH4_3g18930 FvH4_3g18940 FvH4_3g25560 FvH4_4g12410 FvH4_5g05980 FvH4_5g24860 FvH4_5g25360 FvH4_5g25510 FvH4_5g27470 FvH4_5g27620 FvH4_5g27760 FvH4_5g29460 FvH4_6g04191 FvH4_6g39190 FvH4_6g39200 FvH4_6g39580 FvH4_6g39600 FvH4_7g11470
malus_domestica MD00G1154700.v1.1 MD00G1154800.v1.1 MD00G1155000.v1.1 MD03G1255000.v1.1 MD03G1255100.v1.1 MD03G1255200.v1.1 MD03G1255300.v1.1 MD06G1030300.v1.1 MD11G1219300.v1.1 MD11G1264900.v1.1
prunus_persica Prupe.1G575600_v2.0.a1 Prupe.3G065000_v2.0.a1 Prupe.3G111400_v2.0.a1 Prupe.4G151300_v2.0.a1 Prupe.4G151900_v2.0.a1 Prupe.4G153700_v2.0.a1 Prupe.4G154000_v2.0.a1 Prupe.4G230600_v2.0.a1 Prupe.4G230900_v2.0.a1 Prupe.4G231000_v2.0.a1 Prupe.4G246100_v2.0.a1 Prupe.4G255500_v2.0.a1 Prupe.6G133600_v2.0.a1 Prupe.6G134000_v2.0.a1 Prupe.I005300_v2.0.a1
pyrus_communis pycom03g14030 pycom03g15340
rosa_chinensis RchiOBHm_Chr3g0452871 RchiOBHm_Chr5g0056721 RchiOBHm_Chr6g0271921 RchiOBHm_Chr7g0211251 RchiOBHm_Chr7g0231191
rosa_laevigata RLG00000000989 RLG00000001070 RLG00000001076 RLG00000001103 RLG00000001116 RLG00000001118 RLG00000001936 RLG00000001949 RLG00000002610 RLG00000002710 RLG00000003013 RLG00000013562 RLG00000013567 RLG00000018805 RLG00000020667 RLG00000020716 RLG00000020717 RLG00000025564 RLG00000028522 RLG00000030016 RLG00000033070 RLG00000033077 RLG00000033081 RLG00000033086 RLG00000033235 RLG00000033291 RLG00000033337 RLG00000033338 RLG00000033340 RLG00000033345 RLG00000033346 RLG00000033874 RLG00000033885 RLG00000034356 RLG00000034411 RLG00000034414
rosa_multiflora Rmu_co8273153.1_g000001 Rmu_co8288493.1_g000001 Rmu_co8293081.1_g000001 Rmu_co8429197.1_g000001 Rmu_sc0000055.1_g000007 Rmu_sc0000218.1_g000011 Rmu_sc0000533.1_g000061 Rmu_sc0000755.1_g000007 Rmu_sc0000758.1_g000005 Rmu_sc0000898.1_g000011 Rmu_sc0000898.1_g000025 Rmu_sc0001561.1_g000008 Rmu_sc0001571.1_g000004 Rmu_sc0002292.1_g000005 Rmu_sc0002292.1_g000006 Rmu_sc0002308.1_g000010 Rmu_sc0002449.1_g000010 Rmu_sc0002449.1_g000011 Rmu_sc0002536.1_g000004 Rmu_sc0002536.1_g000005 Rmu_sc0002536.1_g000015 Rmu_sc0003238.1_g000014 Rmu_sc0003545.1_g000015 Rmu_sc0003720.1_g000009 Rmu_sc0003878.1_g000040 Rmu_sc0003878.1_g000041 Rmu_sc0003878.1_g000047 Rmu_sc0003878.1_g000048 Rmu_sc0003972.1_g000001 Rmu_sc0004322.1_g000008 Rmu_sc0004379.1_g000014 Rmu_sc0005478.1_g000002 Rmu_sc0006240.1_g000008 Rmu_sc0006847.1_g000022 Rmu_sc0007753.1_g000022 Rmu_sc0007782.1_g000001 Rmu_sc0008328.1_g000002 Rmu_sc0008526.1_g000005 Rmu_sc0008835.1_g000013 Rmu_sc0014005.1_g000009 Rmu_sc0014478.1_g000004 Rmu_sc0015060.1_g000021 Rmu_sc0016364.1_g000001 Rmu_sc0016727.1_g000004 Rmu_sc0020600.1_g000008 Rmu_sc0022743.1_g000003 Rmu_sc0032116.1_g000002 Rmu_sc0033519.1_g000005 Rmu_sc0042823.1_g000001 Rmu_ssc0000134.1_g000011
rosa_roxburghii Rroxscaffold_1G00029360 Rroxscaffold_1G00034880 Rroxscaffold_1G00034930 Rroxscaffold_1G00034970 Rroxscaffold_1G00042100 Rroxscaffold_1G00049130 Rroxscaffold_1G00049660 Rroxscaffold_1G00051410 Rroxscaffold_2G00094840 Rroxscaffold_2G00094850 Rroxscaffold_2G00095300 Rroxscaffold_3G00224990 Rroxscaffold_3G00225050 Rroxscaffold_3G00225080 Rroxscaffold_3G00225360 Rroxscaffold_3G00235370 Rroxscaffold_3G00243820 Rroxscaffold_3G00243860 Rroxscaffold_3G00243920 Rroxscaffold_3G00244920 Rroxscaffold_4G00305330 Rroxscaffold_5G00373100 Rroxscaffold_6G00407840 Rroxscaffold_6G00422000 Rroxscaffold_6G00429880 Rroxscaffold_7G00186180
rosa_rugosa Rorug01G0120600 Rorug01G0127200 Rorug01G0128500 Rorug01G0206000 Rorug02G0251400 Rorug02G0420800 Rorug02G0436800 Rorug02G0441000 Rorug02G0643100 Rorug03G0339200 Rorug04G0168000 Rorug04G0168100 Rorug05G0104500 Rorug05G0105300 Rorug05G0105700 Rorug05G0105800 Rorug05G0118900 Rorug05G0175700 Rorug05G0228200 Rorug05G0229000 Rorug05G0229500 Rorug06G0064300 Rorug07G0124700 Rorug07G0156100 Rorug07G0156700 Rorug07G0158100 Rorug07G0219600 Rorug07G0273400 Rorug07G0291800 Rorug07G0294300 Rorug07G0297400 Rorug07G0297800
rosa_samantha Rh1BG189400 Rh1CG103600 Rh1CG142100 Rh1CG208100 Rh1DG209200 Rh2CG296600 Rh2CG301600 Rh2CG485100 Rh2CG489800 Rh2CG490000 Rh2DG333700 Rh2DG526600 Rh2DG526800 Rh3BG048500 Rh3CG047100 Rh3DG048100 Rh5AG198800 Rh5AG211300 Rh5AG213900 Rh5AG217700 Rh5AG221800 Rh5AG225800 Rh5AG262500 Rh5AG309600 Rh5BG210200 Rh5CG216300 Rh5CG217100 Rh5CG217500 Rh5CG233900 Rh5CG236800 Rh5CG239600 Rh5CG241200 Rh5CG244900 Rh5CG245100 Rh5CG254600 Rh5CG299700 Rh5CG343400 Rh5CG343600 Rh5CG406800 Rh5DG215100 Rh5DG215200 Rh5DG220900 Rh5DG222800 Rh5DG226600 Rh5DG226700 Rh5DG226800 Rh5DG231600 Rh5DG273600 Rh5DG327700 Rh5DG328300 Rh6BG185200 Rh6DG174700 Rh7AG257100 Rh7AG285100 Rh7AG293000 Rh7AG294700 Rh7AG296700 Rh7AG297200 Rh7AG298400 Rh7AG306700 Rh7AG362600 Rh7AG379100 Rh7AG449400 Rh7AG451800 Rh7AG453400 Rh7AG453500 Rh7AG459000 Rh7BG251000 Rh7BG275900 Rh7BG276100 Rh7BG276800 Rh7BG285400 Rh7BG353800 Rh7BG400900 Rh7BG418600 Rh7BG421100 Rh7BG424000 Rh7BG424300 Rh7BG424400 Rh7DG288700
rosa_wichuraiana Rw0G000390 Rw0G010750 Rw0G015930 Rw0G020680 Rw0G023760 Rw1G008930 Rw1G012360 Rw1G019040 Rw2G025060 Rw2G041400 Rw2G041420 Rw3G003610 Rw5G018050 Rw5G018130 Rw5G019340 Rw5G019550 Rw5G020700 Rw5G024510 Rw5G036060 Rw6G015630 Rw7G021960 Rw7G024340 Rw7G024900 Rw7G024940 Rw7G025030 Rw7G025280 Rw7G030800 Rw7G032090 Rw7G037610 Rw7G038010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 314
AciI CCGC 2 cut(s) 312, 353
AcsI RAATTY 1 cut(s) 538
AcyI GRCGYC 2 cut(s) 333, 356
AfaI GTAC 2 cut(s) 24, 348
AfiI CCNNNNNNNGG 1 cut(s) 610
AgsI TTSAA 1 cut(s) 449
AjnI CCWGG 1 cut(s) 317
AluBI AGCT 3 cut(s) 145, 262, 654
AluI AGCT 3 cut(s) 145, 262, 654
Alw26I GTCTC 4 cut(s) 363, 557, 594, 638
AoxI GGCC 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 309
ApoI RAATTY 1 cut(s) 538
AspLEI GCGC 1 cut(s) 8
AsuC2I CCSGG 1 cut(s) 60
AsuHPI GGTGA 2 cut(s) 247, 593
AxyI CCTNAGG 1 cut(s) 609
BanI GGYRCC 1 cut(s) 314
BauI CACGAG 1 cut(s) 440
BbsI GAAGAC 2 cut(s) 135, 336
BbvI GCAGC 1 cut(s) 321
BccI CCATC 2 cut(s) 590, 658
BciT130I CCWGG 1 cut(s) 319
BclI TGATCA 2 cut(s) 586, 628
BcnI CCSGG 1 cut(s) 60
BcoDI GTCTC 4 cut(s) 363, 557, 594, 638
BisI GCNGC 3 cut(s) 310, 313, 354
BlsI GCNGC 3 cut(s) 311, 314, 355
BmcAI AGTACT 1 cut(s) 348
Bme1390I CCNGG 2 cut(s) 60, 319
BmiI GGNNCC 1 cut(s) 316
BmrFI CCNGG 2 cut(s) 60, 319
BmsI GCATC 2 cut(s) 445, 467
BpiI GAAGAC 2 cut(s) 135, 336
BpuMI CCSGG 1 cut(s) 60
BsaBI GATNNNNATC 1 cut(s) 48
BsaHI GRCGYC 2 cut(s) 333, 356
BsaI GGTCTC 1 cut(s) 594
BsaJI CCNNGG 2 cut(s) 33, 182
BsaXI ACNNNNNCTCC 2 cut(s) 259, 289
Bsc4I CCNNNNNNNGG 1 cut(s) 610
Bse21I CCTNAGG 1 cut(s) 609
Bse8I GATNNNNATC 1 cut(s) 48
BseBI CCWGG 1 cut(s) 319
BseDI CCNNGG 2 cut(s) 33, 182
BseJI GATNNNNATC 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 610
BseMII CTCAG 1 cut(s) 600
BseRI GAGGAG 1 cut(s) 674
BseXI GCAGC 1 cut(s) 321
BseYI CCCAGC 1 cut(s) 258
Bsh1285I CGRYCG 1 cut(s) 427
BshFI GGCC 1 cut(s) 76
BshNI GGYRCC 1 cut(s) 314
BsiEI CGRYCG 1 cut(s) 427
BsiSI CCGG 1 cut(s) 59
BslFI GGGAC 2 cut(s) 96, 134
BslI CCNNNNNNNGG 1 cut(s) 610
BsmAI GTCTC 4 cut(s) 363, 557, 594, 638
BsmBI CGTCTC 2 cut(s) 363, 557
BsmFI GGGAC 2 cut(s) 96, 134
BsnI GGCC 1 cut(s) 76
Bso31I GGTCTC 1 cut(s) 594
Bsp143I GATC 7 cut(s) 49, 160, 424, 524, 547, 586, 628
Bsp19I CCATGG 2 cut(s) 33, 182
BspACI CCGC 2 cut(s) 312, 353
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 1 cut(s) 601
BspLI GGNNCC 1 cut(s) 316
BspT107I GGYRCC 1 cut(s) 314
BspTNI GGTCTC 1 cut(s) 594
BssECI CCNNGG 2 cut(s) 33, 182
BssMI GATC 7 cut(s) 49, 160, 424, 524, 547, 586, 628
BssNI GRCGYC 2 cut(s) 333, 356
BssSI CACGAG 1 cut(s) 440
BssT1I CCWWGG 2 cut(s) 33, 182
Bst2BI CACGAG 1 cut(s) 440
Bst2UI CCWGG 1 cut(s) 319
Bst4CI ACNGT 3 cut(s) 304, 578, 649
BstACI GRCGYC 2 cut(s) 333, 356
BstC8I GCNNGC 2 cut(s) 287, 431
BstDEI CTNAG 3 cut(s) 609, 615, 655
BstDSI CCRYGG 2 cut(s) 33, 182
BstENI CCTNNNNNAGG 1 cut(s) 608
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 7 cut(s) 52, 163, 427, 527, 550, 589, 631
BstMAI GTCTC 4 cut(s) 363, 557, 594, 638
BstMBI GATC 7 cut(s) 49, 160, 424, 524, 547, 586, 628
BstMCI CGRYCG 1 cut(s) 427
BstNI CCWGG 1 cut(s) 319
BstSCI CCNGG 2 cut(s) 58, 317
BstV1I GCAGC 1 cut(s) 321
BstV2I GAAGAC 2 cut(s) 135, 336
Bsu36I CCTNAGG 1 cut(s) 609
BsuRI GGCC 1 cut(s) 76
BtgI CCRYGG 2 cut(s) 33, 182
BtsIMutI CAGTG 1 cut(s) 654
Cac8I GCNNGC 2 cut(s) 287, 431
CfoI GCGC 1 cut(s) 8
CseI GACGC 2 cut(s) 341, 345
Csp6I GTAC 2 cut(s) 23, 347
CviAII CATG 3 cut(s) 34, 183, 436
CviJI RGCY 7 cut(s) 63, 76, 145, 262, 433, 614, 654
CviKI_1 RGCY 7 cut(s) 63, 76, 145, 262, 433, 614, 654
CviQI GTAC 2 cut(s) 23, 347
DdeI CTNAG 3 cut(s) 609, 615, 655
DpnI GATC 7 cut(s) 51, 162, 426, 526, 549, 588, 630
DpnII GATC 7 cut(s) 49, 160, 424, 524, 547, 586, 628
Eco130I CCWWGG 2 cut(s) 33, 182
Eco31I GGTCTC 1 cut(s) 594
Eco81I CCTNAGG 1 cut(s) 609
EcoNI CCTNNNNNAGG 1 cut(s) 608
EcoRI GAATTC 1 cut(s) 538
EcoRII CCWGG 1 cut(s) 317
EcoT14I CCWWGG 2 cut(s) 33, 182
EcoT22I ATGCAT 1 cut(s) 460
ErhI CCWWGG 2 cut(s) 33, 182
Esp3I CGTCTC 2 cut(s) 363, 557
FaeI CATG 3 cut(s) 37, 186, 439
FaiI YATR 7 cut(s) 35, 168, 184, 193, 293, 437, 633
FalI AAGNNNNNCTT 2 cut(s) 333, 365
FaqI GGGAC 2 cut(s) 96, 134
FatI CATG 3 cut(s) 33, 182, 435
FbaI TGATCA 2 cut(s) 586, 628
Fnu4HI GCNGC 3 cut(s) 310, 313, 354
Fsp4HI GCNGC 3 cut(s) 310, 313, 354
GlaI GCGC 1 cut(s) 7
GluI GCNGC 3 cut(s) 310, 313, 354
GsaI CCCAGC 1 cut(s) 262
HaeIII GGCC 1 cut(s) 76
HapII CCGG 1 cut(s) 59
HgaI GACGC 2 cut(s) 341, 345
HhaI GCGC 1 cut(s) 8
Hin1I GRCGYC 2 cut(s) 333, 356
Hin1II CATG 3 cut(s) 37, 186, 439
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HinfI GANTC 3 cut(s) 274, 410, 638
HpaII CCGG 1 cut(s) 59
HphI GGTGA 2 cut(s) 247, 593
Hpy188I TCNGA 2 cut(s) 544, 643
Hpy188III TCNNGA 2 cut(s) 551, 608
Hpy99I CGWCG 2 cut(s) 125, 578
HpyAV CCTTC 2 cut(s) 548, 614
HpyCH4III ACNGT 3 cut(s) 304, 578, 649
HpyCH4IV ACGT 2 cut(s) 478, 495
HpyCH4V TGCA 2 cut(s) 439, 458
HpyF3I CTNAG 3 cut(s) 609, 615, 655
HpySE526I ACGT 2 cut(s) 478, 495
Hsp92I GRCGYC 2 cut(s) 333, 356
Hsp92II CATG 3 cut(s) 37, 186, 439
HspAI GCGC 1 cut(s) 6
Ksp22I TGATCA 2 cut(s) 586, 628
Kzo9I GATC 7 cut(s) 49, 160, 424, 524, 547, 586, 628
LpnPI CCDG 7 cut(s) 72, 90, 272, 304, 331, 415, 621
Lsp1109I GCAGC 1 cut(s) 321
LweI GCATC 2 cut(s) 445, 467
MaeII ACGT 2 cut(s) 478, 495
MalI GATC 7 cut(s) 51, 162, 426, 526, 549, 588, 630
MboI GATC 7 cut(s) 49, 160, 424, 524, 547, 586, 628
MboII GAAGA 8 cut(s) 44, 98, 140, 244, 341, 393, 396, 557
MluCI AATT 2 cut(s) 212, 538
MlyI GAGTC 2 cut(s) 268, 404
MnlI CCTC 4 cut(s) 66, 254, 604, 652
Mph1103I ATGCAT 1 cut(s) 460
MspA1I CMGCKG 1 cut(s) 312
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 2 cut(s) 60, 319
MvaI CCWGG 1 cut(s) 319
NciI CCSGG 1 cut(s) 60
NcoI CCATGG 2 cut(s) 33, 182
NdeII GATC 7 cut(s) 49, 160, 424, 524, 547, 586, 628
NlaIII CATG 3 cut(s) 37, 186, 439
NlaIV GGNNCC 1 cut(s) 316
NmeAIII GCCGAG 1 cut(s) 392
NsiI ATGCAT 1 cut(s) 460
PfeI GAWTC 1 cut(s) 638
PkrI GCNGC 3 cut(s) 311, 314, 355
Ple19I CGATCG 1 cut(s) 427
PleI GAGTC 2 cut(s) 268, 404
PpsI GAGTC 2 cut(s) 268, 404
Psp6I CCWGG 1 cut(s) 317
PspFI CCCAGC 1 cut(s) 258
PspGI CCWGG 1 cut(s) 317
PspN4I GGNNCC 1 cut(s) 316
PvuI CGATCG 1 cut(s) 427
RsaI GTAC 2 cut(s) 24, 348
RsaNI GTAC 2 cut(s) 23, 347
SatI GCNGC 3 cut(s) 310, 313, 354
Sau3AI GATC 7 cut(s) 49, 160, 424, 524, 547, 586, 628
ScaI AGTACT 1 cut(s) 348
SchI GAGTC 2 cut(s) 268, 404
ScrFI CCNGG 2 cut(s) 60, 319
SetI ASST 8 cut(s) 147, 246, 264, 320, 481, 498, 606, 656
SfaNI GCATC 2 cut(s) 445, 467
Sse9I AATT 2 cut(s) 212, 538
SsiI CCGC 2 cut(s) 312, 353
StyD4I CCNGG 2 cut(s) 58, 317
StyI CCWWGG 2 cut(s) 33, 182
TaaI ACNGT 3 cut(s) 304, 578, 649
TaiI ACGT 2 cut(s) 481, 498
TaqI TCGA 1 cut(s) 120
TaqII GACCGA 1 cut(s) 517
TasI AATT 2 cut(s) 212, 538
TatI WGTACW 1 cut(s) 346
TauI GCSGC 2 cut(s) 315, 356
TfiI GAWTC 1 cut(s) 638
TscAI CASTG 1 cut(s) 654
TseI GCWGC 1 cut(s) 309
TspDTI ATGAA 1 cut(s) 89
TspGWI ACGGA 4 cut(s) 6, 10, 138, 411
TspRI CASTG 1 cut(s) 654
XagI CCTNNNNNAGG 1 cut(s) 608
XapI RAATTY 1 cut(s) 538
XcmI CCANNNNNNNNNTGG 1 cut(s) 189
ZrmI AGTACT 1 cut(s) 348
Zsp2I ATGCAT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.