Rh5CG236800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
24596831 .. 24597460
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG236800.1

Sequence Viewer

Length: 630 bp
ATGTACGAGTTCCAACTTGACGAGTCGCAACTCCTGCACAAGAAACAAGTAAATAAGAATGAATACACTCTTTGTTTACTAATTAGGAAGAATGATATAGTACTACCGGAAAAGAAGAAGACAAAATTAAGGCAAGAAGAAGAGAATCATGAGATGCTCGAAGATTATGTCAAGGACGACGATGGAAATGACACCGATCCTGAATCGGAGCCGCAAGCGAAACGGCAACGTCTTCTGCCATGCACTCATGATAATGTGCCAGCACCATCATTATTGGATTTCCCTCGGCTAGAAAAATGGTATGATCAACGACAATTCTTGCTGCCAGCTGAACCTCAACCAAGGGAAGAAAATTTGGGGCAGAAATGTCAGATACCAACATTTTCAGCTAATGAATTAATGAGTGGCCATAACTCTCACCAAGATAAAAATCAGGTGCAGCAAATGCCAGCTGAAGAGGGTATCTTGACACCAGGGGAAGTTGATCTGTATGGAGGCAGCTTGAGTGATGTTATGGTTGGTGCAAACTGGCCCAACTCTTTTGTAGGGGAGCTAGTGAAGGATGACCAGCCATATACCATGGAAGAGGGTGAATGGAATGATTTTCTTGTTCAGATTTTGAGTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

24.2

Weight (kDa)

4.56

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53610 AT1G53620
fragaria_vesca FvH4_3g16890 FvH4_3g16900 FvH4_3g16910 FvH4_3g17012 FvH4_3g18170 FvH4_3g18460 FvH4_3g18930 FvH4_3g18940 FvH4_3g25560 FvH4_4g12410 FvH4_5g05980 FvH4_5g24860 FvH4_5g25360 FvH4_5g25510 FvH4_5g27470 FvH4_5g27620 FvH4_5g27760 FvH4_5g29460 FvH4_6g04191 FvH4_6g39190 FvH4_6g39200 FvH4_6g39580 FvH4_6g39600 FvH4_7g11470
malus_domestica MD00G1154700.v1.1 MD00G1154800.v1.1 MD00G1155000.v1.1 MD03G1255000.v1.1 MD03G1255100.v1.1 MD03G1255200.v1.1 MD03G1255300.v1.1 MD06G1030300.v1.1 MD11G1219300.v1.1 MD11G1264900.v1.1
prunus_persica Prupe.1G575600_v2.0.a1 Prupe.3G065000_v2.0.a1 Prupe.3G111400_v2.0.a1 Prupe.4G151300_v2.0.a1 Prupe.4G151900_v2.0.a1 Prupe.4G153700_v2.0.a1 Prupe.4G154000_v2.0.a1 Prupe.4G230600_v2.0.a1 Prupe.4G230900_v2.0.a1 Prupe.4G231000_v2.0.a1 Prupe.4G246100_v2.0.a1 Prupe.4G255500_v2.0.a1 Prupe.6G133600_v2.0.a1 Prupe.6G134000_v2.0.a1 Prupe.I005300_v2.0.a1
pyrus_communis pycom03g14030 pycom03g15340
rosa_chinensis RchiOBHm_Chr3g0452871 RchiOBHm_Chr5g0056721 RchiOBHm_Chr6g0271921 RchiOBHm_Chr7g0211251 RchiOBHm_Chr7g0231191
rosa_laevigata RLG00000000989 RLG00000001070 RLG00000001076 RLG00000001103 RLG00000001116 RLG00000001118 RLG00000001936 RLG00000001949 RLG00000002610 RLG00000002710 RLG00000003013 RLG00000013562 RLG00000013567 RLG00000018805 RLG00000020667 RLG00000020716 RLG00000020717 RLG00000025564 RLG00000028522 RLG00000030016 RLG00000033070 RLG00000033077 RLG00000033081 RLG00000033086 RLG00000033235 RLG00000033291 RLG00000033337 RLG00000033338 RLG00000033340 RLG00000033345 RLG00000033346 RLG00000033874 RLG00000033885 RLG00000034356 RLG00000034411 RLG00000034414
rosa_multiflora Rmu_co8273153.1_g000001 Rmu_co8288493.1_g000001 Rmu_co8293081.1_g000001 Rmu_co8429197.1_g000001 Rmu_sc0000055.1_g000007 Rmu_sc0000218.1_g000011 Rmu_sc0000533.1_g000061 Rmu_sc0000755.1_g000007 Rmu_sc0000758.1_g000005 Rmu_sc0000898.1_g000011 Rmu_sc0000898.1_g000025 Rmu_sc0001561.1_g000008 Rmu_sc0001571.1_g000004 Rmu_sc0002292.1_g000005 Rmu_sc0002292.1_g000006 Rmu_sc0002308.1_g000010 Rmu_sc0002449.1_g000010 Rmu_sc0002449.1_g000011 Rmu_sc0002536.1_g000004 Rmu_sc0002536.1_g000005 Rmu_sc0002536.1_g000015 Rmu_sc0003238.1_g000014 Rmu_sc0003545.1_g000015 Rmu_sc0003720.1_g000009 Rmu_sc0003878.1_g000040 Rmu_sc0003878.1_g000041 Rmu_sc0003878.1_g000047 Rmu_sc0003878.1_g000048 Rmu_sc0003972.1_g000001 Rmu_sc0004322.1_g000008 Rmu_sc0004379.1_g000014 Rmu_sc0005478.1_g000002 Rmu_sc0006240.1_g000008 Rmu_sc0006847.1_g000022 Rmu_sc0007753.1_g000022 Rmu_sc0007782.1_g000001 Rmu_sc0008328.1_g000002 Rmu_sc0008526.1_g000005 Rmu_sc0008835.1_g000013 Rmu_sc0014005.1_g000009 Rmu_sc0014478.1_g000004 Rmu_sc0015060.1_g000021 Rmu_sc0016364.1_g000001 Rmu_sc0016727.1_g000004 Rmu_sc0020600.1_g000008 Rmu_sc0022743.1_g000003 Rmu_sc0032116.1_g000002 Rmu_sc0033519.1_g000005 Rmu_sc0042823.1_g000001 Rmu_ssc0000134.1_g000011
rosa_roxburghii Rroxscaffold_1G00029360 Rroxscaffold_1G00034880 Rroxscaffold_1G00034930 Rroxscaffold_1G00034970 Rroxscaffold_1G00042100 Rroxscaffold_1G00049130 Rroxscaffold_1G00049660 Rroxscaffold_1G00051410 Rroxscaffold_2G00094840 Rroxscaffold_2G00094850 Rroxscaffold_2G00095300 Rroxscaffold_3G00224990 Rroxscaffold_3G00225050 Rroxscaffold_3G00225080 Rroxscaffold_3G00225360 Rroxscaffold_3G00235370 Rroxscaffold_3G00243820 Rroxscaffold_3G00243860 Rroxscaffold_3G00243920 Rroxscaffold_3G00244920 Rroxscaffold_4G00305330 Rroxscaffold_5G00373100 Rroxscaffold_6G00407840 Rroxscaffold_6G00422000 Rroxscaffold_6G00429880 Rroxscaffold_7G00186180
rosa_rugosa Rorug01G0120600 Rorug01G0127200 Rorug01G0128500 Rorug01G0206000 Rorug02G0251400 Rorug02G0420800 Rorug02G0436800 Rorug02G0441000 Rorug02G0643100 Rorug03G0339200 Rorug04G0168000 Rorug04G0168100 Rorug05G0104500 Rorug05G0105300 Rorug05G0105700 Rorug05G0105800 Rorug05G0118900 Rorug05G0175700 Rorug05G0228200 Rorug05G0229000 Rorug05G0229500 Rorug06G0064300 Rorug07G0124700 Rorug07G0156100 Rorug07G0156700 Rorug07G0158100 Rorug07G0219600 Rorug07G0273400 Rorug07G0291800 Rorug07G0294300 Rorug07G0297400 Rorug07G0297800
rosa_samantha Rh1BG189400 Rh1CG103600 Rh1CG142100 Rh1CG208100 Rh1DG209200 Rh2CG296600 Rh2CG301600 Rh2CG485100 Rh2CG489800 Rh2CG490000 Rh2DG333700 Rh2DG526600 Rh2DG526800 Rh3BG048500 Rh3CG047100 Rh3DG048100 Rh5AG198800 Rh5AG211300 Rh5AG213900 Rh5AG217700 Rh5AG221800 Rh5AG225800 Rh5AG262500 Rh5AG309600 Rh5BG210200 Rh5CG216300 Rh5CG217100 Rh5CG217500 Rh5CG233900 Rh5CG236800 Rh5CG239600 Rh5CG241200 Rh5CG244900 Rh5CG245100 Rh5CG254600 Rh5CG299700 Rh5CG343400 Rh5CG343600 Rh5CG406800 Rh5DG215100 Rh5DG215200 Rh5DG220900 Rh5DG222800 Rh5DG226600 Rh5DG226700 Rh5DG226800 Rh5DG231600 Rh5DG273600 Rh5DG327700 Rh5DG328300 Rh6BG185200 Rh6DG174700 Rh7AG257100 Rh7AG285100 Rh7AG293000 Rh7AG294700 Rh7AG296700 Rh7AG297200 Rh7AG298400 Rh7AG306700 Rh7AG362600 Rh7AG379100 Rh7AG449400 Rh7AG451800 Rh7AG453400 Rh7AG453500 Rh7AG459000 Rh7BG251000 Rh7BG275900 Rh7BG276100 Rh7BG276800 Rh7BG285400 Rh7BG353800 Rh7BG400900 Rh7BG418600 Rh7BG421100 Rh7BG424000 Rh7BG424300 Rh7BG424400 Rh7DG288700
rosa_wichuraiana Rw0G000390 Rw0G010750 Rw0G015930 Rw0G020680 Rw0G023760 Rw1G008930 Rw1G012360 Rw1G019040 Rw2G025060 Rw2G041400 Rw2G041420 Rw3G003610 Rw5G018050 Rw5G018130 Rw5G019340 Rw5G019550 Rw5G020700 Rw5G024510 Rw5G036060 Rw6G015630 Rw7G021960 Rw7G024340 Rw7G024900 Rw7G024940 Rw7G025030 Rw7G025280 Rw7G030800 Rw7G032090 Rw7G037610 Rw7G038010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 212
AclWI GGATC 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 406
AcsI RAATTY 1 cut(s) 352
AcuI CTGAAG 1 cut(s) 474
AfaI GTAC 3 cut(s) 5, 102, 625
AjnI CCWGG 1 cut(s) 472
AluBI AGCT 5 cut(s) 329, 389, 452, 501, 553
AluI AGCT 5 cut(s) 329, 389, 452, 501, 553
AlwI GGATC 1 cut(s) 191
AoxI GGCC 2 cut(s) 406, 530
ApeKI GCWGC 3 cut(s) 322, 439, 498
ApoI RAATTY 1 cut(s) 352
ArsI GACNNNNNNTTYG 2 cut(s) 153, 185
AseI ATTAAT 1 cut(s) 398
AspS9I GGNCC 1 cut(s) 531
AsuHPI GGTGA 2 cut(s) 410, 602
BalI TGGCCA 1 cut(s) 408
BbsI GAAGAC 2 cut(s) 125, 224
BbvI GCAGC 3 cut(s) 309, 451, 510
BccI CCATC 2 cut(s) 176, 274
BceAI ACGGC 1 cut(s) 239
BciT130I CCWGG 1 cut(s) 474
BclI TGATCA 1 cut(s) 304
BfaI CTAG 2 cut(s) 290, 554
BisI GCNGC 4 cut(s) 212, 323, 440, 499
BlsI GCNGC 4 cut(s) 213, 324, 441, 500
BmcAI AGTACT 2 cut(s) 102, 625
Bme1390I CCNGG 1 cut(s) 474
BmgT120I GGNCC 1 cut(s) 531
BmiI GGNNCC 1 cut(s) 210
BmrFI CCNGG 1 cut(s) 474
BmsI GCATC 1 cut(s) 144
BpiI GAAGAC 2 cut(s) 125, 224
BpuEI CTTGAG 1 cut(s) 523
BsaBI GATNNNNATC 1 cut(s) 429
BsaJI CCNNGG 4 cut(s) 284, 341, 473, 579
BsaWI WCCGGW 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 533
Bse8I GATNNNNATC 1 cut(s) 429
BseBI CCWGG 1 cut(s) 474
BseDI CCNNGG 4 cut(s) 284, 341, 473, 579
BseGI GGATG 1 cut(s) 568
BseJI GATNNNNATC 1 cut(s) 429
BseNI ACTGG 1 cut(s) 533
BseXI GCAGC 3 cut(s) 309, 451, 510
BsgI GTGCAG 2 cut(s) 20, 458
BshFI GGCC 2 cut(s) 408, 532
BsiSI CCGG 1 cut(s) 107
BsnI GGCC 2 cut(s) 408, 532
Bsp143I GATC 3 cut(s) 196, 304, 484
Bsp19I CCATGG 1 cut(s) 579
BspACI CCGC 1 cut(s) 212
BspANI GGCC 2 cut(s) 408, 532
BspHI TCATGA 2 cut(s) 148, 247
BspLI GGNNCC 1 cut(s) 210
BspPI GGATC 1 cut(s) 191
BsrI ACTGG 1 cut(s) 533
BssECI CCNNGG 4 cut(s) 284, 341, 473, 579
BssMI GATC 3 cut(s) 196, 304, 484
BssT1I CCWWGG 2 cut(s) 341, 579
Bst2UI CCWGG 1 cut(s) 474
Bst6I CTCTTC 3 cut(s) 135, 450, 579
BstAPI GCANNNNNTGC 2 cut(s) 34, 445
BstC8I GCNNGC 4 cut(s) 216, 261, 327, 450
BstDEI CTNAG 1 cut(s) 627
BstDSI CCRYGG 1 cut(s) 579
BstF5I GGATG 1 cut(s) 568
BstKTI GATC 3 cut(s) 199, 307, 487
BstMBI GATC 3 cut(s) 196, 304, 484
BstMWI GCNNNNNNNGC 2 cut(s) 34, 445
BstNI CCWGG 1 cut(s) 474
BstSCI CCNGG 1 cut(s) 472
BstV1I GCAGC 3 cut(s) 309, 451, 510
BstV2I GAAGAC 2 cut(s) 125, 224
BsuRI GGCC 2 cut(s) 408, 532
BtgI CCRYGG 1 cut(s) 579
BtsCI GGATG 1 cut(s) 568
Cac8I GCNNGC 4 cut(s) 216, 261, 327, 450
CciI TCATGA 2 cut(s) 148, 247
Cfr13I GGNCC 1 cut(s) 531
Csp6I GTAC 3 cut(s) 4, 101, 624
CviAII CATG 4 cut(s) 149, 240, 248, 580
CviQI GTAC 3 cut(s) 4, 101, 624
DdeI CTNAG 1 cut(s) 627
DpnI GATC 3 cut(s) 198, 306, 486
DpnII GATC 3 cut(s) 196, 304, 484
EaeI YGGCCR 1 cut(s) 406
Eam1104I CTCTTC 3 cut(s) 135, 450, 579
EarI CTCTTC 3 cut(s) 135, 450, 579
Eco130I CCWWGG 2 cut(s) 341, 579
Eco57I CTGAAG 1 cut(s) 474
EcoRII CCWGG 1 cut(s) 472
EcoT14I CCWWGG 2 cut(s) 341, 579
ErhI CCWWGG 2 cut(s) 341, 579
FaeI CATG 4 cut(s) 152, 243, 251, 583
FatI CATG 4 cut(s) 148, 239, 247, 579
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 4 cut(s) 212, 323, 440, 499
FokI GGATG 1 cut(s) 575
Fsp4HI GCNGC 4 cut(s) 212, 323, 440, 499
FspBI CTAG 2 cut(s) 290, 554
GluI GCNGC 4 cut(s) 212, 323, 440, 499
HaeIII GGCC 2 cut(s) 408, 532
HapII CCGG 1 cut(s) 107
Hin1II CATG 4 cut(s) 152, 243, 251, 583
HinfI GANTC 3 cut(s) 23, 145, 203
HpaII CCGG 1 cut(s) 107
HphI GGTGA 2 cut(s) 410, 602
Hpy166II GTNNAC 1 cut(s) 77
Hpy188I TCNGA 3 cut(s) 208, 372, 615
Hpy188III TCNNGA 4 cut(s) 149, 200, 248, 466
Hpy8I GTNNAC 1 cut(s) 77
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 1 cut(s) 553
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 4 cut(s) 37, 243, 439, 524
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 445
HpyF3I CTNAG 1 cut(s) 627
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 4 cut(s) 152, 243, 251, 583
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 3 cut(s) 196, 304, 484
LmnI GCTCC 2 cut(s) 208, 550
Lsp1109I GCAGC 3 cut(s) 309, 451, 510
LweI GCATC 1 cut(s) 144
MaeI CTAG 2 cut(s) 290, 554
MaeII ACGT 1 cut(s) 229
MalI GATC 3 cut(s) 198, 306, 486
MboI GATC 3 cut(s) 196, 304, 484
MlsI TGGCCA 1 cut(s) 408
MluCI AATT 5 cut(s) 81, 125, 314, 352, 395
MluNI TGGCCA 1 cut(s) 408
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 5 cut(s) 294, 345, 451, 488, 580
Mox20I TGGCCA 1 cut(s) 408
MscI TGGCCA 1 cut(s) 408
MseI TTAA 2 cut(s) 128, 398
MslI CAYNNNNRTG 1 cut(s) 252
Msp20I TGGCCA 1 cut(s) 408
MspA1I CMGCKG 2 cut(s) 329, 452
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 474
MvaI CCWGG 1 cut(s) 474
MwoI GCNNNNNNNGC 2 cut(s) 34, 445
NcoI CCATGG 1 cut(s) 579
NdeII GATC 3 cut(s) 196, 304, 484
NlaIII CATG 4 cut(s) 152, 243, 251, 583
NlaIV GGNNCC 1 cut(s) 210
NmeAIII GCCGAG 1 cut(s) 265
PagI TCATGA 2 cut(s) 148, 247
PfeI GAWTC 2 cut(s) 145, 203
PkrI GCNGC 4 cut(s) 213, 324, 441, 500
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PshBI ATTAAT 1 cut(s) 398
Psp6I CCWGG 1 cut(s) 472
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 1 cut(s) 210
PspPI GGNCC 1 cut(s) 531
PvuII CAGCTG 2 cut(s) 329, 452
RsaI GTAC 3 cut(s) 5, 102, 625
RsaNI GTAC 3 cut(s) 4, 101, 624
RseI CAYNNNNRTG 1 cut(s) 252
SaqAI TTAA 2 cut(s) 128, 398
SatI GCNGC 4 cut(s) 212, 323, 440, 499
Sau3AI GATC 3 cut(s) 196, 304, 484
Sau96I GGNCC 1 cut(s) 531
ScaI AGTACT 2 cut(s) 102, 625
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 474
SetI ASST 8 cut(s) 232, 331, 337, 391, 438, 454, 503, 555
SfaNI GCATC 1 cut(s) 144
SmiMI CAYNNNNRTG 1 cut(s) 252
SmlI CTYRAG 1 cut(s) 502
SmoI CTYRAG 1 cut(s) 502
Sse9I AATT 5 cut(s) 81, 125, 314, 352, 395
SsiI CCGC 1 cut(s) 212
SspMI CTAG 2 cut(s) 290, 554
StyD4I CCNGG 1 cut(s) 472
StyI CCWWGG 2 cut(s) 341, 579
TaiI ACGT 1 cut(s) 232
TaqI TCGA 1 cut(s) 159
TasI AATT 5 cut(s) 81, 125, 314, 352, 395
TatI WGTACW 2 cut(s) 100, 623
TauI GCSGC 1 cut(s) 214
TfiI GAWTC 2 cut(s) 145, 203
Tru1I TTAA 2 cut(s) 128, 398
Tru9I TTAA 2 cut(s) 128, 398
TseI GCWGC 3 cut(s) 322, 439, 498
TspDTI ATGAA 2 cut(s) 75, 408
VspI ATTAAT 1 cut(s) 398
XapI RAATTY 1 cut(s) 352
XspI CTAG 2 cut(s) 290, 554
ZrmI AGTACT 2 cut(s) 102, 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.