Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014698

Physical Location & Seq

Genomic Coordinates Reverse (-)

17891256 .. 17892414

Gene Structure 1159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G174300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGGTCGAAGCAGAAATAGAAGACAGAAGCAGCAGAAGCTTGTTAATCTGGATTGGACAGAGCTGCCTCGGGGTATCCTTGAGATCATCTTTGAGCGACTGACTGTGAGTGTGACTGATTGTATATCTGTTAGTGATGTTTGCAAAGCCTGGAGACATGTTGTTGCACAAGAACTTGCTGGTTGGCAAAGCCGTGGTGTGCCATGGCTCATGATGTCTGGCAAAGATAGAGAGGTAAGAACTTGTATTAGCGTACTACAAAAACAACATTGGGACATTGTGCTTCCTGAGGCTTATGGAAGATATTGTTGGGGATCATATCAAGATTGGTTGATTCTAGTAAAACATATTGGTTGTTTCTATCTTGAGATTAGCTTGTTGAATCCATTCTCTAGGAACAAAACTGATCTTCCCAAAACATGGAACTTTTATCATAAGATTGTTCTCTCGGGGCTTCCCATCCTTGAAAACTATGTGTTGAACGGGAAATTTTCACAAAAGCAATCAGCCAGGAGTTTGACTTGGGATATAATTGAAATTCTTGTCCCCGCCGTCTTATCAAGAAAAAAAATTAAAAAATTAAAAAATAAAAAAAATAAAAGAGATGTATTTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

206

Amino Acids

24.03

Weight (kDa)

9.86

Isoelectric Point (pI)

60.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014698)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27200
malus_domestica	MD13G1035900.v1.1
prunus_persica	Prupe.6G174300_v2.0.a1 Prupe.6G178100_v2.0.a1
pyrus_communis	pycom13g03130 pycom16g03310
rosa_chinensis	RchiOBHm_Chr4g0434481
rosa_laevigata	RLG00000006668
rosa_multiflora	Rmu_sc0002251.1_g000016 Rmu_sc0005899.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375830
rosa_rugosa	Rorug04G0277000
rosa_samantha	Rh4AG332600 Rh4BG340400 Rh4CG355600 Rh4DG335800
rosa_wichuraiana	Rw4G028840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	420
AciI	CCGC	1 cut(s)	549
AclWI	GGATC	1 cut(s)	322
AcsI	RAATTY	2 cut(s)	488, 537
AfaI	GTAC	1 cut(s)	255
AfiI	CCNNNNNNNGG	1 cut(s)	420
AflIII	ACRYGT	1 cut(s)	157
AgsI	TTSAA	4 cut(s)	382, 467, 481, 536
AjnI	CCWGG	2 cut(s)	149, 509
AjuI	GAANNNNNNNTTGG	2 cut(s)	292, 324
AluBI	AGCT	3 cut(s)	40, 64, 375
AluI	AGCT	3 cut(s)	40, 64, 375
Alw26I	GTCTC	1 cut(s)	148
AlwI	GGATC	1 cut(s)	322
Ama87I	CYCGRG	2 cut(s)	69, 448
ApeKI	GCWGC	2 cut(s)	31, 64
ApoI	RAATTY	2 cut(s)	488, 537
Asp700I	GAANNNNTTC	1 cut(s)	386
AvaI	CYCGRG	2 cut(s)	69, 448
AxyI	CCTNAGG	1 cut(s)	288
BbsI	GAAGAC	1 cut(s)	28
BbvI	GCAGC	2 cut(s)	43, 51
BccI	CCATC	1 cut(s)	467
BceAI	ACGGC	2 cut(s)	177, 536
BciT130I	CCWGG	2 cut(s)	151, 511
BciVI	GTATCC	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	148
BfaI	CTAG	2 cut(s)	338, 393
BfuI	GTATCC	1 cut(s)	86
BisI	GCNGC	2 cut(s)	32, 65
BlsI	GCNGC	2 cut(s)	33, 66
Bme1390I	CCNGG	2 cut(s)	151, 511
BmeT110I	CYCGRG	2 cut(s)	69, 448
BmrFI	CCNGG	2 cut(s)	151, 511
BpiI	GAAGAC	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	172
BpuEI	CTTGAG	2 cut(s)	101, 386
BsaJI	CCNNGG	3 cut(s)	68, 193, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	420
Bse21I	CCTNAGG	1 cut(s)	288
BseBI	CCWGG	2 cut(s)	151, 511
BseDI	CCNNGG	3 cut(s)	68, 193, 203
BseGI	GGATG	1 cut(s)	459
BseLI	CCNNNNNNNGG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	279
BseXI	GCAGC	2 cut(s)	43, 51
BsiHKCI	CYCGRG	2 cut(s)	69, 448
BslFI	GGGAC	2 cut(s)	287, 530
BslI	CCNNNNNNNGG	1 cut(s)	420
BsmAI	GTCTC	1 cut(s)	148
BsmFI	GGGAC	2 cut(s)	287, 530
BsoBI	CYCGRG	2 cut(s)	69, 448
Bsp143I	GATC	3 cut(s)	84, 314, 406
Bsp19I	CCATGG	1 cut(s)	203
BspACI	CCGC	1 cut(s)	549
BspCNI	CTCAG	1 cut(s)	280
BspHI	TCATGA	1 cut(s)	210
BspPI	GGATC	1 cut(s)	322
BssECI	CCNNGG	3 cut(s)	68, 193, 203
BssMI	GATC	3 cut(s)	84, 314, 406
BssT1I	CCWWGG	1 cut(s)	203
Bst2UI	CCWGG	2 cut(s)	151, 511
Bst4CI	ACNGT	1 cut(s)	106
BstDEI	CTNAG	1 cut(s)	288
BstDSI	CCRYGG	2 cut(s)	193, 203
BstF5I	GGATG	1 cut(s)	459
BstKTI	GATC	3 cut(s)	87, 317, 409
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	3 cut(s)	84, 314, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNI	CCWGG	2 cut(s)	151, 511
BstNSI	RCATGY	1 cut(s)	161
BstSCI	CCNGG	2 cut(s)	149, 509
BstV1I	GCAGC	2 cut(s)	43, 51
BstV2I	GAAGAC	1 cut(s)	28
Bsu36I	CCTNAGG	1 cut(s)	288
BsuI	GTATCC	1 cut(s)	86
BtgI	CCRYGG	2 cut(s)	193, 203
BtsCI	GGATG	1 cut(s)	459
CciI	TCATGA	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	254
CviAII	CATG	4 cut(s)	158, 204, 211, 420
CviJI	RGCY	9 cut(s)	40, 64, 149, 192, 208, 293, 375, 454, 509
CviKI_1	RGCY	9 cut(s)	40, 64, 149, 192, 208, 293, 375, 454, 509
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	3 cut(s)	86, 316, 408
DpnII	GATC	3 cut(s)	84, 314, 406
Eco130I	CCWWGG	1 cut(s)	203
Eco81I	CCTNAGG	1 cut(s)	288
Eco88I	CYCGRG	2 cut(s)	69, 448
EcoRII	CCWGG	2 cut(s)	149, 509
EcoT14I	CCWWGG	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	4 cut(s)	161, 207, 214, 423
FaqI	GGGAC	2 cut(s)	287, 530
FatI	CATG	4 cut(s)	157, 203, 210, 419
FauI	CCCGC	1 cut(s)	556
Fnu4HI	GCNGC	2 cut(s)	32, 65
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	2 cut(s)	32, 65
FspBI	CTAG	2 cut(s)	338, 393
GluI	GCNGC	2 cut(s)	32, 65
GsuI	CTGGAG	1 cut(s)	172
Hin1II	CATG	4 cut(s)	161, 207, 214, 423
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	2 cut(s)	334, 382
Hpy188III	TCNNGA	6 cut(s)	50, 211, 287, 323, 365, 561
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	2 cut(s)	144, 167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	1 cut(s)	288
Hsp92II	CATG	4 cut(s)	161, 207, 214, 423
Kzo9I	GATC	3 cut(s)	84, 314, 406
LpnPI	CCDG	8 cut(s)	35, 136, 163, 165, 204, 300, 496, 523
Lsp1109I	GCAGC	2 cut(s)	43, 51
MaeI	CTAG	2 cut(s)	338, 393
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	3 cut(s)	86, 316, 408
MboI	GATC	3 cut(s)	84, 314, 406
MboII	GAAGA	3 cut(s)	33, 312, 401
MluCI	AATT	5 cut(s)	488, 531, 537, 570, 578
MnlI	CCTC	3 cut(s)	78, 226, 283
MroXI	GAANNNNTTC	1 cut(s)	386
MseI	TTAA	3 cut(s)	45, 573, 581
MspR9I	CCNGG	2 cut(s)	151, 511
MvaI	CCWGG	2 cut(s)	151, 511
MwoI	GCNNNNNNNGC	1 cut(s)	37
NcoI	CCATGG	1 cut(s)	203
NdeII	GATC	3 cut(s)	84, 314, 406
NlaIII	CATG	4 cut(s)	161, 207, 214, 423
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	1 cut(s)	161
PagI	TCATGA	1 cut(s)	210
PciI	ACATGT	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	386
PfeI	GAWTC	2 cut(s)	334, 382
PflMI	CCANNNNNTGG	1 cut(s)	420
PkrI	GCNGC	2 cut(s)	33, 66
PscI	ACATGT	1 cut(s)	157
Psp6I	CCWGG	2 cut(s)	149, 509
PspGI	CCWGG	2 cut(s)	149, 509
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
SaqAI	TTAA	3 cut(s)	45, 573, 581
SatI	GCNGC	2 cut(s)	32, 65
Sau3AI	GATC	3 cut(s)	84, 314, 406
ScrFI	CCNGG	2 cut(s)	151, 511
SetI	ASST	4 cut(s)	42, 66, 237, 377
SmlI	CTYRAG	2 cut(s)	80, 365
SmoI	CTYRAG	2 cut(s)	80, 365
Sse9I	AATT	5 cut(s)	488, 531, 537, 570, 578
SsiI	CCGC	1 cut(s)	549
SspMI	CTAG	2 cut(s)	338, 393
StyD4I	CCNGG	2 cut(s)	149, 509
StyI	CCWWGG	1 cut(s)	203
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	7
TasI	AATT	5 cut(s)	488, 531, 537, 570, 578
TfiI	GAWTC	2 cut(s)	334, 382
Tru1I	TTAA	3 cut(s)	45, 573, 581
Tru9I	TTAA	3 cut(s)	45, 573, 581
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	2 cut(s)	31, 64
Tsp45I	GTSAC	1 cut(s)	112
Van91I	CCANNNNNTGG	1 cut(s)	420
XapI	RAATTY	2 cut(s)	488, 537
XceI	RCATGY	1 cut(s)	161
XmnI	GAANNNNTTC	1 cut(s)	386
XspI	CTAG	2 cut(s)	338, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.