pycom13g03130

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0014698
Physical Location & Seq
Reverse (-)
2114741 .. 2115904
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g03130.1

Sequence Viewer

Length: 1164 bp
ATGAATGTGGATTGGGCAGAGCTGCCACAGAGTATACTTGAGATTATCTTTGAGCGACTGCCTCTGATTGATTGTATCTCTGTTAGTGATGTTTGCAGAGCTTGGAGCAACGTTATTGGACAGGAACTGTCTTGTTGGCAAAGGCGTGGTGTCCCGTGGCTCATGATGTGTGGCCAGAAAGACAGACATGTAAGGACTTGTCTTAGCATATTACAGAATCAAGATTGGGAGATGGTGCTTCATCAGGCTATTGGAAGATACTGTTGGGGATCATATCAAGATTGGTTGATTCTAGTGAAAGATGTCGATTGTTTCAACCTTGAGATTAGCTTGTTGAATCCATTCTCTGGGAAGAAAACTGATCTTCCGAAAACATGGAATTTTTATCACAAGATGGTTCTCTCAGCACTTCCCTCTGTTGAAAACTTTGTTTGCATGCTCGTCCATGGTCAACACCGGGAGCTTGCATTTTGGGTCCACGGAGCTCAATCATGGCTTAAACATAAGCTAGATGGTGAACCGTTTGAGGATGCTGTCTTCTCGGATGGAAGTTTCTATCTTCTAAGCAGTGATTATAACATTTCACAGATCAAGGTTACTGATGTGCTTGCTGCCATCAGAACAGATGATGATTGTAAGATAGAAACAGGTTGCCATGAAGTAAAAATGTCCGAGGAGCAGGAAGACGAGCAGGAAAGTTACACTGTGCTGAAGTACCTTGTGGAATCTTGTGGAGAGCTTCTCCTTGTTTGTAGGTTTTACAGCACCAAACCAAATGCTATTCTTGAAACACACGATTTCAACGTATATAAGCTGGATTTCAGCCAGATGGCATGGAAGAGGGTACATGATTTGGGGGATCAAGTACTATTTCTAGGAAAATGTTGTTCGCGATCTGTTTCTTCAGGTGAACTTGGTGTTCCAATGACAAACCGTATCTACTTCTCTAATGATCATGCTGCGCCGTGGTGGAATGAATGGGATTCTAGTCATCTTTATGGAATTCCAGCTCGTTTTGATCCAGACAGAAGGGATTGGGGTGTGTTCAAGCTTGGCGACGACAATCAAGAGAATTTTCGGTTCCGTGGCAATACAGACTGTTGGGCGCCTATTTGGTTCACTGCCCCCCAATGGTGGTGCTGTAGGAATCTGGCTCTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

388

Amino Acids

45.14

Weight (kDa)

5.18

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 5 - 48 2.6e-07 F-box-like
F-box PF00646 5 - 39 3e-06 F-box domain
Beta-prop_KIB1-4 PF03478 83 - 349 1.2e-49 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27200
malus_domestica MD13G1035900.v1.1
prunus_persica Prupe.6G174300_v2.0.a1 Prupe.6G178100_v2.0.a1
pyrus_communis pycom13g03130 pycom16g03310
rosa_chinensis RchiOBHm_Chr4g0434481
rosa_laevigata RLG00000006668
rosa_multiflora Rmu_sc0002251.1_g000016 Rmu_sc0005899.1_g000009
rosa_roxburghii Rroxscaffold_5G00375830
rosa_rugosa Rorug04G0277000
rosa_samantha Rh4AG332600 Rh4BG340400 Rh4CG355600 Rh4DG335800
rosa_wichuraiana Rw4G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 576
AccB1I GGYRCC 1 cut(s) 1105
AccB7I CCANNNNNTGG 1 cut(s) 347
AccI GTMKAC 1 cut(s) 34
AccII CGCG 1 cut(s) 892
AclI AACGTT 1 cut(s) 111
AclWI GGATC 3 cut(s) 277, 867, 1013
AcoI YGGCCR 1 cut(s) 172
AcsI RAATTY 3 cut(s) 379, 1002, 1072
AcuI CTGAAG 2 cut(s) 731, 888
AcyI GRCGYC 1 cut(s) 1106
AfaI GTAC 3 cut(s) 716, 846, 867
AfiI CCNNNNNNNGG 3 cut(s) 347, 1131, 1134
AflIII ACRYGT 1 cut(s) 187
AgsI TTSAA 6 cut(s) 316, 337, 422, 788, 802, 1048
AjuI GAANNNNNNNTTGG 2 cut(s) 247, 279
Alw21I GWGCWC 1 cut(s) 487
AlwI GGATC 3 cut(s) 277, 867, 1013
AlwNI CAGNNNCTG 1 cut(s) 127
AoxI GGCC 1 cut(s) 172
ApeKI GCWGC 3 cut(s) 22, 611, 959
ApoI RAATTY 3 cut(s) 379, 1002, 1072
Asp700I GAANNNNTTC 1 cut(s) 341
AspLEI GCGC 2 cut(s) 964, 1108
AspS9I GGNCC 1 cut(s) 475
AsuC2I CCSGG 1 cut(s) 458
AsuHPI GGTGA 2 cut(s) 527, 920
AvaII GGWCC 1 cut(s) 475
BalI TGGCCA 1 cut(s) 174
BanI GGYRCC 1 cut(s) 1105
BanII GRGCYC 1 cut(s) 487
BbsI GAAGAC 2 cut(s) 529, 690
Bbv12I GWGCWC 1 cut(s) 487
BbvI GCAGC 3 cut(s) 9, 598, 946
BccI CCATC 6 cut(s) 226, 388, 506, 539, 623, 823
BceAI ACGGC 1 cut(s) 949
BclI TGATCA 1 cut(s) 952
BcnI CCSGG 1 cut(s) 458
BfaI CTAG 4 cut(s) 293, 509, 875, 987
BfmI CTRYAG 1 cut(s) 1141
BfoI RGCGCY 1 cut(s) 1109
BisI GCNGC 3 cut(s) 23, 612, 960
BlsI GCNGC 3 cut(s) 24, 613, 961
BmcAI AGTACT 1 cut(s) 867
Bme1390I CCNGG 1 cut(s) 458
Bme18I GGWCC 1 cut(s) 475
BmgT120I GGNCC 1 cut(s) 475
BmiI GGNNCC 3 cut(s) 476, 1082, 1107
BmrFI CCNGG 1 cut(s) 458
BmsI GCATC 1 cut(s) 520
BpiI GAAGAC 2 cut(s) 529, 690
BplI GAGNNNNNCTC 2 cut(s) 726, 758
BpuEI CTTGAG 2 cut(s) 59, 341
BpuMI CCSGG 1 cut(s) 458
BsaHI GRCGYC 1 cut(s) 1106
BsaJI CCNNGG 6 cut(s) 155, 445, 478, 672, 965, 1084
Bsc4I CCNNNNNNNGG 3 cut(s) 347, 1131, 1134
BseDI CCNNGG 6 cut(s) 155, 445, 478, 672, 965, 1084
BseGI GGATG 2 cut(s) 535, 550
BseLI CCNNNNNNNGG 3 cut(s) 347, 1131, 1134
BseMII CTCAG 1 cut(s) 417
BseRI GAGGAG 1 cut(s) 689
BseXI GCAGC 3 cut(s) 9, 598, 946
Bsh1236I CGCG 1 cut(s) 892
BshFI GGCC 1 cut(s) 174
BshNI GGYRCC 1 cut(s) 1105
BsiHKAI GWGCWC 1 cut(s) 487
BsiSI CCGG 1 cut(s) 457
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 3 cut(s) 347, 1131, 1134
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 487
Bsp143I GATC 7 cut(s) 269, 361, 588, 859, 893, 952, 1018
Bsp19I CCATGG 1 cut(s) 445
Bsp68I TCGCGA 1 cut(s) 892
BspANI GGCC 1 cut(s) 174
BspCNI CTCAG 1 cut(s) 416
BspFNI CGCG 1 cut(s) 892
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 3 cut(s) 476, 1082, 1107
BspPI GGATC 3 cut(s) 277, 867, 1013
BspT107I GGYRCC 1 cut(s) 1105
BssECI CCNNGG 6 cut(s) 155, 445, 478, 672, 965, 1084
BssMI GATC 7 cut(s) 269, 361, 588, 859, 893, 952, 1018
BssNAI GTATAC 1 cut(s) 35
BssNI GRCGYC 1 cut(s) 1106
BssT1I CCWWGG 1 cut(s) 445
Bst1107I GTATAC 1 cut(s) 35
Bst4CI ACNGT 6 cut(s) 129, 263, 522, 706, 935, 1100
Bst6I CTCTTC 1 cut(s) 833
BstACI GRCGYC 1 cut(s) 1106
BstC8I GCNNGC 3 cut(s) 437, 465, 609
BstDEI CTNAG 4 cut(s) 203, 403, 563, 1157
BstDSI CCRYGG 5 cut(s) 155, 445, 478, 965, 1084
BstF5I GGATG 2 cut(s) 535, 550
BstFNI CGCG 1 cut(s) 892
BstH2I RGCGCY 1 cut(s) 1109
BstHHI GCGC 2 cut(s) 964, 1108
BstKTI GATC 7 cut(s) 272, 364, 591, 862, 896, 955, 1021
BstMBI GATC 7 cut(s) 269, 361, 588, 859, 893, 952, 1018
BstNSI RCATGY 2 cut(s) 191, 439
BstSCI CCNGG 1 cut(s) 456
BstSFI CTRYAG 1 cut(s) 1141
BstUI CGCG 1 cut(s) 892
BstV1I GCAGC 3 cut(s) 9, 598, 946
BstV2I GAAGAC 2 cut(s) 529, 690
BstZ17I GTATAC 1 cut(s) 35
BsuRI GGCC 1 cut(s) 174
BtgI CCRYGG 5 cut(s) 155, 445, 478, 965, 1084
BtsCI GGATG 2 cut(s) 535, 550
BtsI GCAGTG 2 cut(s) 574, 1119
BtsIMutI CAGTG 3 cut(s) 574, 702, 1119
BtuMI TCGCGA 1 cut(s) 892
Cac8I GCNNGC 3 cut(s) 437, 465, 609
CaiI CAGNNNCTG 1 cut(s) 127
CciI TCATGA 1 cut(s) 162
CfoI GCGC 2 cut(s) 964, 1108
Cfr13I GGNCC 1 cut(s) 475
Csp6I GTAC 3 cut(s) 715, 845, 866
CviQI GTAC 3 cut(s) 715, 845, 866
DdeI CTNAG 4 cut(s) 203, 403, 563, 1157
DinI GGCGCC 1 cut(s) 1107
DpnI GATC 7 cut(s) 271, 363, 590, 861, 895, 954, 1020
DpnII GATC 7 cut(s) 269, 361, 588, 859, 893, 952, 1018
EaeI YGGCCR 1 cut(s) 172
Eam1104I CTCTTC 1 cut(s) 833
EarI CTCTTC 1 cut(s) 833
Ecl136II GAGCTC 1 cut(s) 485
Eco130I CCWWGG 1 cut(s) 445
Eco24I GRGCYC 1 cut(s) 487
Eco47I GGWCC 1 cut(s) 475
Eco53kI GAGCTC 1 cut(s) 485
Eco57I CTGAAG 2 cut(s) 731, 888
EcoICRI GAGCTC 1 cut(s) 485
EcoRI GAATTC 1 cut(s) 1002
EcoT14I CCWWGG 1 cut(s) 445
EcoT38I GRGCYC 1 cut(s) 487
EgeI GGCGCC 1 cut(s) 1107
EheI GGCGCC 1 cut(s) 1107
ErhI CCWWGG 1 cut(s) 445
FaqI GGGAC 1 cut(s) 137
FbaI TGATCA 1 cut(s) 952
FblI GTMKAC 1 cut(s) 34
Fnu4HI GCNGC 3 cut(s) 23, 612, 960
FokI GGATG 2 cut(s) 542, 557
FriOI GRGCYC 1 cut(s) 487
Fsp4HI GCNGC 3 cut(s) 23, 612, 960
FspBI CTAG 4 cut(s) 293, 509, 875, 987
GlaI GCGC 2 cut(s) 963, 1107
GluI GCNGC 3 cut(s) 23, 612, 960
HaeII RGCGCY 1 cut(s) 1109
HaeIII GGCC 1 cut(s) 174
HapII CCGG 1 cut(s) 457
HhaI GCGC 2 cut(s) 964, 1108
Hin1I GRCGYC 1 cut(s) 1106
Hin6I GCGC 2 cut(s) 962, 1106
HinP1I GCGC 2 cut(s) 962, 1106
HincII GTYRAC 1 cut(s) 452
HindII GTYRAC 1 cut(s) 452
HindIII AAGCTT 1 cut(s) 1049
HinfI GANTC 6 cut(s) 217, 289, 337, 725, 983, 1147
HpaII CCGG 1 cut(s) 457
HphI GGTGA 2 cut(s) 527, 920
Hpy166II GTNNAC 6 cut(s) 35, 452, 478, 518, 911, 1119
Hpy188I TCNGA 5 cut(s) 66, 369, 544, 620, 673
Hpy188III TCNNGA 7 cut(s) 163, 221, 278, 785, 891, 1022, 1067
Hpy8I GTNNAC 6 cut(s) 35, 452, 478, 518, 911, 1119
Hpy99I CGWCG 1 cut(s) 1061
HpyAV CCTTC 1 cut(s) 1023
HpyCH4III ACNGT 6 cut(s) 129, 263, 522, 706, 935, 1100
HpyCH4IV ACGT 2 cut(s) 111, 804
HpyCH4V TGCA 3 cut(s) 96, 435, 467
HpyF3I CTNAG 4 cut(s) 203, 403, 563, 1157
HpySE526I ACGT 2 cut(s) 111, 804
Hsp92I GRCGYC 1 cut(s) 1106
HspAI GCGC 2 cut(s) 962, 1106
KasI GGCGCC 1 cut(s) 1105
Ksp22I TGATCA 1 cut(s) 952
Kzo9I GATC 7 cut(s) 269, 361, 588, 859, 893, 952, 1018
LmnI GCTCC 4 cut(s) 105, 460, 482, 676
Lsp1109I GCAGC 3 cut(s) 9, 598, 946
LweI GCATC 1 cut(s) 520
MaeI CTAG 4 cut(s) 293, 509, 875, 987
MaeII ACGT 2 cut(s) 111, 804
MaeIII GTNAC 2 cut(s) 595, 698
MalI GATC 7 cut(s) 271, 363, 590, 861, 895, 954, 1020
MboI GATC 7 cut(s) 269, 361, 588, 859, 893, 952, 1018
MboII GAAGA 8 cut(s) 267, 356, 364, 529, 551, 695, 850, 894
MhlI GDGCHC 1 cut(s) 487
MlsI TGGCCA 1 cut(s) 174
MluCI AATT 3 cut(s) 379, 1002, 1072
MluNI TGGCCA 1 cut(s) 174
Mly113I GGCGCC 1 cut(s) 1106
MnlI CCTC 5 cut(s) 72, 424, 520, 667, 834
Mox20I TGGCCA 1 cut(s) 174
MroXI GAANNNNTTC 1 cut(s) 341
MscI TGGCCA 1 cut(s) 174
MseI TTAA 1 cut(s) 498
MslI CAYNNNNRTG 1 cut(s) 996
Msp20I TGGCCA 1 cut(s) 174
MspI CCGG 1 cut(s) 457
MspR9I CCNGG 1 cut(s) 458
MvnI CGCG 1 cut(s) 892
NarI GGCGCC 1 cut(s) 1106
NciI CCSGG 1 cut(s) 458
NcoI CCATGG 1 cut(s) 445
NdeII GATC 7 cut(s) 269, 361, 588, 859, 893, 952, 1018
NlaIV GGNNCC 3 cut(s) 476, 1082, 1107
NruI TCGCGA 1 cut(s) 892
NspI RCATGY 2 cut(s) 191, 439
PaeI GCATGC 1 cut(s) 439
PagI TCATGA 1 cut(s) 162
PciI ACATGT 1 cut(s) 187
PcsI WCGNNNNNNNCGW 1 cut(s) 801
PdmI GAANNNNTTC 1 cut(s) 341
PfeI GAWTC 6 cut(s) 217, 289, 337, 725, 983, 1147
PflMI CCANNNNNTGG 1 cut(s) 347
PkrI GCNGC 3 cut(s) 24, 613, 961
PluTI GGCGCC 1 cut(s) 1109
PscI ACATGT 1 cut(s) 187
PsiI TTATAA 1 cut(s) 576
Psp124BI GAGCTC 1 cut(s) 487
Psp1406I AACGTT 1 cut(s) 111
PspN4I GGNNCC 3 cut(s) 476, 1082, 1107
PspPI GGNCC 1 cut(s) 475
PstNI CAGNNNCTG 1 cut(s) 127
RruI TCGCGA 1 cut(s) 892
RsaI GTAC 3 cut(s) 716, 846, 867
RsaNI GTAC 3 cut(s) 715, 845, 866
RseI CAYNNNNRTG 1 cut(s) 996
SacI GAGCTC 1 cut(s) 487
SaqAI TTAA 1 cut(s) 498
SatI GCNGC 3 cut(s) 23, 612, 960
Sau3AI GATC 7 cut(s) 269, 361, 588, 859, 893, 952, 1018
Sau96I GGNCC 1 cut(s) 475
ScaI AGTACT 1 cut(s) 867
ScrFI CCNGG 1 cut(s) 458
SduI GDGCHC 1 cut(s) 487
SfaNI GCATC 1 cut(s) 520
SfcI CTRYAG 1 cut(s) 1141
SfoI GGCGCC 1 cut(s) 1107
SinI GGWCC 1 cut(s) 475
SmiMI CAYNNNNRTG 1 cut(s) 996
SmlI CTYRAG 2 cut(s) 38, 320
SmoI CTYRAG 2 cut(s) 38, 320
SphI GCATGC 1 cut(s) 439
Sse9I AATT 3 cut(s) 379, 1002, 1072
SspDI GGCGCC 1 cut(s) 1105
SspMI CTAG 4 cut(s) 293, 509, 875, 987
SstI GAGCTC 1 cut(s) 487
StyD4I CCNGG 1 cut(s) 456
StyI CCWWGG 1 cut(s) 445
TaaI ACNGT 6 cut(s) 129, 263, 522, 706, 935, 1100
TaiI ACGT 2 cut(s) 114, 807
TaqI TCGA 1 cut(s) 306
TasI AATT 3 cut(s) 379, 1002, 1072
TatI WGTACW 1 cut(s) 865
TfiI GAWTC 6 cut(s) 217, 289, 337, 725, 983, 1147
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TscAI CASTG 3 cut(s) 574, 709, 1126
TseI GCWGC 3 cut(s) 22, 611, 959
TspDTI ATGAA 4 cut(s) 17, 230, 672, 990
TspGWI ACGGA 2 cut(s) 495, 1073
TspRI CASTG 3 cut(s) 574, 709, 1126
Van91I CCANNNNNTGG 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 475
XapI RAATTY 3 cut(s) 379, 1002, 1072
XceI RCATGY 2 cut(s) 191, 439
XmiI GTMKAC 1 cut(s) 34
XmnI GAANNNNTTC 1 cut(s) 341
XspI CTAG 4 cut(s) 293, 509, 875, 987
ZrmI AGTACT 1 cut(s) 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.