Rorug04G0277000

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0014698
Physical Location & Seq
Reverse (-)
44952044 .. 44954894
2851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0277000.1

Sequence Viewer

Length: 1140 bp
ATGGGAAGAGCGCCGTGCTGTGAAAAAGTTGGGCTAAAAAGAGGAAGGTGGACAGCCGAAGAAGACGAGATCTTGACAAACTACATTCAACTCCATGGAGAAGGCTCTTGGAGATCTTTGCCCAAGAATGCAGGTTTGCTAAGGTGCGGGAAGAGTTGCAGACTGAGGTGGATAAATTATCTGAGGACTGACTTGAGGAGAGGGAACATCACACAAGAGGAGGAAGAAACCATTGTTAAGTTGCACACTGCTTTGGGTAATAGGTGGTCATTGATTGCTGCACACTTACCAGGAAGAACAGACAATGAGATTAAAAACTACTGGAACTCTCATTTGAGTCGCAAAATTTACACCTTCACCAAGCTTATGAAAAACGAATGTCTCATCCCCACCATGATCAATAATGTTTCGAAGTTAGCTGCTGCGAAATCGAAGCGCAGAGTACGTACAAGCAGATTCGCCATGAAAAGCAAGAATAAGCTCAACAAGAATGGTACAGTACTAGCCCCATTTCCACAAGTTCCAAAGCCAGCTTATAAGAGTGATGTGTTTGAATCATTAACCGGAGAAAACCCAAATCAAGTGCAAACCAGTCATTCAATGGGCTTGGAGTGTTGGGCCCCAAAAGAGAGAGATGAAAAAGAGGAAGAGGAGAATACAATAAGAACGTTGGGTGGTGTGCAAGGTTCTTGCTTGGATATTACAGCAGGGATGATTAGTTCCACTACTCCTGCTATATATGCTGCTAATAATGGAGAAAAAGAGGCATTGGACCCATATGAATGTGTAGACAGTGATGTAATTGTGGATCATAACCCAAGTGGGGTTACCACTGTTGTAGGGTTTAAGGAGCAGAGAGAAAATGGGGCCATGGGTTTTACAGATGACCATGAGGTGACCGTAAAGAGTCATCAAGGTATTTGGAGCTCAAATATTGAAGGGAGCTGTGGTGAGATGTATGCTTTCTCGTCACCACTGAATGCCGCCTTTGATGATCATGAATGGCTCAATTGTGATTGGGTAGGTGGTGGTGGTGGTCTTCAATGTCATAATGATGAATTGGAGTTATGGGATGAAGGAGAGGTGAGGATACCTTGGTTATGGGAGAGTGGCAATGACGTCGGTGATCAAAGAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

379

Amino Acids

42.52

Weight (kDa)

5.68

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 4.3e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 77 1.7e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 3e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 117 1.5e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27200
malus_domestica MD13G1035900.v1.1
prunus_persica Prupe.6G174300_v2.0.a1 Prupe.6G178100_v2.0.a1
pyrus_communis pycom13g03130 pycom16g03310
rosa_chinensis RchiOBHm_Chr4g0434481
rosa_laevigata RLG00000006668
rosa_multiflora Rmu_sc0002251.1_g000016 Rmu_sc0005899.1_g000009
rosa_roxburghii Rroxscaffold_5G00375830
rosa_rugosa Rorug04G0277000
rosa_samantha Rh4AG332600 Rh4BG340400 Rh4CG355600 Rh4DG335800
rosa_wichuraiana Rw4G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 537
AatII GACGTC 1 cut(s) 1122
Acc36I ACCTGC 1 cut(s) 122
AccI GTMKAC 1 cut(s) 789
AciI CCGC 2 cut(s) 147, 984
AclI AACGTT 1 cut(s) 668
AclWI GGATC 1 cut(s) 816
AcsI RAATTY 1 cut(s) 345
AcyI GRCGYC 1 cut(s) 1119
AfaI GTAC 4 cut(s) 444, 448, 496, 501
AfiI CCNNNNNNNGG 1 cut(s) 823
AgsI TTSAA 5 cut(s) 89, 554, 600, 938, 1043
AjnI CCWGG 1 cut(s) 289
AloI GAACNNNNNNTCC 2 cut(s) 703, 735
AluBI AGCT 6 cut(s) 364, 419, 481, 533, 927, 945
AluI AGCT 6 cut(s) 364, 419, 481, 533, 927, 945
Alw21I GWGCWC 1 cut(s) 929
Alw26I GTCTC 2 cut(s) 386, 1128
AlwI GGATC 1 cut(s) 816
AoxI GGCC 2 cut(s) 618, 867
ApaI GGGCCC 1 cut(s) 622
ApeKI GCWGC 4 cut(s) 278, 419, 422, 743
ApoI RAATTY 1 cut(s) 345
AspLEI GCGC 2 cut(s) 13, 438
AspS9I GGNCC 4 cut(s) 618, 619, 772, 867
AsuHPI GGTGA 6 cut(s) 349, 907, 962, 963, 1096, 1136
AsuII TTCGAA 1 cut(s) 410
AvaII GGWCC 1 cut(s) 772
BaeGI GKGCMC 1 cut(s) 622
BaeI ACNNNNGTAYC 2 cut(s) 1082, 1115
BanII GRGCYC 2 cut(s) 622, 929
BbsI GAAGAC 2 cut(s) 69, 1031
Bbv12I GWGCWC 1 cut(s) 929
BbvI GCAGC 4 cut(s) 265, 406, 409, 730
BcgI CGANNNNNNTGC 2 cut(s) 1102, 1136
BciT130I CCWGG 1 cut(s) 291
BciVI GTATCC 1 cut(s) 1083
BclI TGATCA 3 cut(s) 396, 994, 1126
BcoDI GTCTC 2 cut(s) 386, 1128
BfaI CTAG 1 cut(s) 503
BfoI RGCGCY 1 cut(s) 14
BfuAI ACCTGC 1 cut(s) 122
BfuI GTATCC 1 cut(s) 1083
BglII AGATCT 2 cut(s) 69, 113
BisI GCNGC 5 cut(s) 279, 420, 423, 744, 984
BlsI GCNGC 5 cut(s) 280, 421, 424, 745, 985
BmcAI AGTACT 1 cut(s) 501
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 772
BmgT120I GGNCC 4 cut(s) 618, 619, 772, 867
BmiI GGNNCC 4 cut(s) 620, 621, 774, 868
BmrFI CCNGG 1 cut(s) 291
BpiI GAAGAC 2 cut(s) 69, 1031
Bpu10I CCTNAGC 1 cut(s) 140
Bpu14I TTCGAA 1 cut(s) 410
BpuEI CTTGAG 1 cut(s) 214
BsaAI YACGTR 1 cut(s) 446
BsaHI GRCGYC 1 cut(s) 1119
BsaJI CCNNGG 3 cut(s) 94, 870, 1094
BsaWI WCCGGW 1 cut(s) 563
BsaXI ACNNNNNCTCC 2 cut(s) 934, 964
Bsc4I CCNNNNNNNGG 1 cut(s) 823
Bse1I ACTGG 2 cut(s) 326, 591
Bse3DI GCAATG 1 cut(s) 1120
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 3 cut(s) 94, 870, 1094
BseGI GGATG 3 cut(s) 384, 717, 1078
BseLI CCNNNNNNNGG 1 cut(s) 823
BseMI GCAATG 1 cut(s) 1120
BseMII CTCAG 2 cut(s) 155, 173
BseNI ACTGG 2 cut(s) 326, 591
BseRI GAGGAG 3 cut(s) 211, 233, 665
BseSI GKGCMC 1 cut(s) 622
BseXI GCAGC 4 cut(s) 265, 406, 409, 730
BsgI GTGCAG 1 cut(s) 264
BshFI GGCC 2 cut(s) 620, 869
BsiHKAI GWGCWC 1 cut(s) 929
BsiSI CCGG 1 cut(s) 564
BslI CCNNNNNNNGG 1 cut(s) 823
BsmAI GTCTC 2 cut(s) 386, 1128
BsmI GAATGC 2 cut(s) 133, 985
BsnI GGCC 2 cut(s) 620, 869
Bsp119I TTCGAA 1 cut(s) 410
Bsp120I GGGCCC 1 cut(s) 618
Bsp1286I GDGCHC 2 cut(s) 622, 929
Bsp143I GATC 6 cut(s) 69, 113, 396, 808, 994, 1126
Bsp19I CCATGG 2 cut(s) 94, 870
BspACI CCGC 2 cut(s) 147, 984
BspANI GGCC 2 cut(s) 620, 869
BspCNI CTCAG 2 cut(s) 156, 174
BspHI TCATGA 1 cut(s) 997
BspLI GGNNCC 4 cut(s) 620, 621, 774, 868
BspMI ACCTGC 1 cut(s) 122
BspPI GGATC 1 cut(s) 816
BspT104I TTCGAA 1 cut(s) 410
BsrDI GCAATG 1 cut(s) 1120
BsrI ACTGG 2 cut(s) 326, 591
BssECI CCNNGG 3 cut(s) 94, 870, 1094
BssMI GATC 6 cut(s) 69, 113, 396, 808, 994, 1126
BssNI GRCGYC 1 cut(s) 1119
BssT1I CCWWGG 3 cut(s) 94, 870, 1094
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 4 cut(s) 499, 794, 835, 901
Bst6I CTCTTC 2 cut(s) 146, 642
BstACI GRCGYC 1 cut(s) 1119
BstBAI YACGTR 1 cut(s) 446
BstBI TTCGAA 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 531
BstDEI CTNAG 3 cut(s) 140, 164, 182
BstDSI CCRYGG 2 cut(s) 94, 870
BstEII GGTNACC 2 cut(s) 826, 895
BstF5I GGATG 3 cut(s) 384, 717, 1078
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 2 cut(s) 13, 438
BstKTI GATC 6 cut(s) 72, 116, 399, 811, 997, 1129
BstMAI GTCTC 2 cut(s) 386, 1128
BstMBI GATC 6 cut(s) 69, 113, 396, 808, 994, 1126
BstMWI GCNNNNNNNGC 1 cut(s) 740
BstNI CCWGG 1 cut(s) 291
BstPI GGTNACC 2 cut(s) 826, 895
BstSCI CCNGG 1 cut(s) 289
BstSLI GKGCMC 1 cut(s) 622
BstSNI TACGTA 1 cut(s) 446
BstV1I GCAGC 4 cut(s) 265, 406, 409, 730
BstV2I GAAGAC 2 cut(s) 69, 1031
BstX2I RGATCY 2 cut(s) 69, 113
BstYI RGATCY 2 cut(s) 69, 113
BsuI GTATCC 1 cut(s) 1083
BsuRI GGCC 2 cut(s) 620, 869
BtgI CCRYGG 2 cut(s) 94, 870
BtsCI GGATG 3 cut(s) 384, 717, 1078
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 4 cut(s) 246, 799, 831, 974
BveI ACCTGC 1 cut(s) 122
Cac8I GCNNGC 1 cut(s) 531
CciI TCATGA 1 cut(s) 997
CfoI GCGC 2 cut(s) 13, 438
Cfr13I GGNCC 4 cut(s) 618, 619, 772, 867
Csp6I GTAC 4 cut(s) 443, 447, 495, 500
CviAII CATG 6 cut(s) 95, 394, 463, 871, 890, 998
CviQI GTAC 4 cut(s) 443, 447, 495, 500
DdeI CTNAG 3 cut(s) 140, 164, 182
DpnI GATC 6 cut(s) 71, 115, 398, 810, 996, 1128
DpnII GATC 6 cut(s) 69, 113, 396, 808, 994, 1126
Eam1104I CTCTTC 2 cut(s) 146, 642
EarI CTCTTC 2 cut(s) 146, 642
Ecl136II GAGCTC 1 cut(s) 927
Eco105I TACGTA 1 cut(s) 446
Eco130I CCWWGG 3 cut(s) 94, 870, 1094
Eco24I GRGCYC 2 cut(s) 622, 929
Eco47I GGWCC 1 cut(s) 772
Eco53kI GAGCTC 1 cut(s) 927
Eco91I GGTNACC 2 cut(s) 826, 895
EcoICRI GAGCTC 1 cut(s) 927
EcoO109I RGGNCCY 1 cut(s) 619
EcoO65I GGTNACC 2 cut(s) 826, 895
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 3 cut(s) 94, 870, 1094
EcoT38I GRGCYC 2 cut(s) 622, 929
ErhI CCWWGG 3 cut(s) 94, 870, 1094
FaeI CATG 6 cut(s) 98, 397, 466, 874, 893, 1001
FatI CATG 6 cut(s) 94, 393, 462, 870, 889, 997
FauI CCCGC 1 cut(s) 140
FauNDI CATATG 1 cut(s) 778
FbaI TGATCA 3 cut(s) 396, 994, 1126
FblI GTMKAC 1 cut(s) 789
Fnu4HI GCNGC 5 cut(s) 279, 420, 423, 744, 984
FokI GGATG 3 cut(s) 371, 724, 1085
FriOI GRGCYC 2 cut(s) 622, 929
Fsp4HI GCNGC 5 cut(s) 279, 420, 423, 744, 984
FspBI CTAG 1 cut(s) 503
GlaI GCGC 2 cut(s) 12, 437
GluI GCNGC 5 cut(s) 279, 420, 423, 744, 984
HaeII RGCGCY 1 cut(s) 14
HaeIII GGCC 2 cut(s) 620, 869
HapII CCGG 1 cut(s) 564
HhaI GCGC 2 cut(s) 13, 438
Hin1I GRCGYC 1 cut(s) 1119
Hin1II CATG 6 cut(s) 98, 397, 466, 874, 893, 1001
Hin6I GCGC 2 cut(s) 11, 436
HinP1I GCGC 2 cut(s) 11, 436
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 4 cut(s) 337, 456, 554, 907
HpaII CCGG 1 cut(s) 564
HphI GGTGA 6 cut(s) 349, 907, 962, 963, 1096, 1136
Hpy166II GTNNAC 2 cut(s) 51, 790
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 2 cut(s) 73, 998
Hpy8I GTNNAC 2 cut(s) 51, 790
Hpy99I CGWCG 1 cut(s) 1124
HpyAV CCTTC 5 cut(s) 39, 95, 364, 932, 1070
HpyCH4III ACNGT 4 cut(s) 499, 794, 835, 901
HpyCH4IV ACGT 3 cut(s) 445, 668, 1119
HpyCH4V TGCA 6 cut(s) 131, 159, 244, 281, 586, 682
HpyF10VI GCNNNNNNNGC 1 cut(s) 740
HpyF3I CTNAG 3 cut(s) 140, 164, 182
HpySE526I ACGT 3 cut(s) 445, 668, 1119
Hsp92I GRCGYC 1 cut(s) 1119
Hsp92II CATG 6 cut(s) 98, 397, 466, 874, 893, 1001
HspAI GCGC 2 cut(s) 11, 436
Ksp22I TGATCA 3 cut(s) 396, 994, 1126
Kzo9I GATC 6 cut(s) 69, 113, 396, 808, 994, 1126
LmnI GCTCC 3 cut(s) 850, 924, 942
LpnPI CCDG 9 cut(s) 117, 276, 303, 307, 543, 577, 604, 693, 744
Lsp1109I GCAGC 4 cut(s) 265, 406, 409, 730
MaeI CTAG 1 cut(s) 503
MaeII ACGT 3 cut(s) 445, 668, 1119
MaeIII GTNAC 3 cut(s) 826, 895, 969
MalI GATC 6 cut(s) 71, 115, 398, 810, 996, 1128
MboI GATC 6 cut(s) 69, 113, 396, 808, 994, 1126
MboII GAAGA 8 cut(s) 18, 71, 74, 163, 236, 306, 659, 1031
MfeI CAATTG 1 cut(s) 1009
MflI RGATCY 2 cut(s) 69, 113
MhlI GDGCHC 2 cut(s) 622, 929
MluCI AATT 5 cut(s) 175, 345, 801, 1009, 1058
MlyI GAGTC 2 cut(s) 346, 916
MseI TTAA 4 cut(s) 237, 312, 560, 846
MslI CAYNNNNRTG 2 cut(s) 781, 1053
MspI CCGG 1 cut(s) 564
MspR9I CCNGG 1 cut(s) 291
MunI CAATTG 1 cut(s) 1009
Mva1269I GAATGC 2 cut(s) 133, 985
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 740
NcoI CCATGG 2 cut(s) 94, 870
NdeI CATATG 1 cut(s) 778
NdeII GATC 6 cut(s) 69, 113, 396, 808, 994, 1126
NlaIII CATG 6 cut(s) 98, 397, 466, 874, 893, 1001
NlaIV GGNNCC 4 cut(s) 620, 621, 774, 868
NmuCI GTSAC 2 cut(s) 895, 969
NspV TTCGAA 1 cut(s) 410
PagI TCATGA 1 cut(s) 997
PctI GAATGC 2 cut(s) 133, 985
PfeI GAWTC 2 cut(s) 456, 554
PkrI GCNGC 5 cut(s) 280, 421, 424, 745, 985
PleI GAGTC 2 cut(s) 345, 915
PpsI GAGTC 2 cut(s) 345, 915
Ppu21I YACGTR 1 cut(s) 446
PsiI TTATAA 1 cut(s) 537
Psp124BI GAGCTC 1 cut(s) 929
Psp1406I AACGTT 1 cut(s) 668
Psp6I CCWGG 1 cut(s) 289
PspEI GGTNACC 2 cut(s) 826, 895
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 4 cut(s) 620, 621, 774, 868
PspOMI GGGCCC 1 cut(s) 618
PspPI GGNCC 4 cut(s) 618, 619, 772, 867
PsuI RGATCY 2 cut(s) 69, 113
RsaI GTAC 4 cut(s) 444, 448, 496, 501
RsaNI GTAC 4 cut(s) 443, 447, 495, 500
RseI CAYNNNNRTG 2 cut(s) 781, 1053
SacI GAGCTC 1 cut(s) 929
SaqAI TTAA 4 cut(s) 237, 312, 560, 846
SatI GCNGC 5 cut(s) 279, 420, 423, 744, 984
Sau3AI GATC 6 cut(s) 69, 113, 396, 808, 994, 1126
Sau96I GGNCC 4 cut(s) 618, 619, 772, 867
ScaI AGTACT 1 cut(s) 501
SchI GAGTC 2 cut(s) 346, 916
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 2 cut(s) 622, 929
SfuI TTCGAA 1 cut(s) 410
SinI GGWCC 1 cut(s) 772
SmiMI CAYNNNNRTG 2 cut(s) 781, 1053
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
SnaBI TACGTA 1 cut(s) 446
Sse9I AATT 5 cut(s) 175, 345, 801, 1009, 1058
SsiI CCGC 2 cut(s) 147, 984
SspI AATATT 1 cut(s) 934
SspMI CTAG 1 cut(s) 503
SstI GAGCTC 1 cut(s) 929
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 3 cut(s) 94, 870, 1094
TaaI ACNGT 4 cut(s) 499, 794, 835, 901
TaiI ACGT 3 cut(s) 448, 671, 1122
TaqI TCGA 2 cut(s) 410, 431
TasI AATT 5 cut(s) 175, 345, 801, 1009, 1058
TatI WGTACW 1 cut(s) 499
TauI GCSGC 1 cut(s) 986
TfiI GAWTC 2 cut(s) 456, 554
Tru1I TTAA 4 cut(s) 237, 312, 560, 846
Tru9I TTAA 4 cut(s) 237, 312, 560, 846
TscAI CASTG 4 cut(s) 253, 799, 838, 981
TseFI GTSAC 2 cut(s) 895, 969
TseI GCWGC 4 cut(s) 278, 419, 422, 743
Tsp45I GTSAC 2 cut(s) 895, 969
TspDTI ATGAA 7 cut(s) 383, 479, 651, 795, 1014, 1071, 1089
TspRI CASTG 4 cut(s) 253, 799, 838, 981
VpaK11BI GGWCC 1 cut(s) 772
XapI RAATTY 1 cut(s) 345
XcmI CCANNNNNNNNNTGG 1 cut(s) 598
XmiI GTMKAC 1 cut(s) 789
XspI CTAG 1 cut(s) 503
ZraI GACGTC 1 cut(s) 1120
ZrmI AGTACT 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.