Prupe.6G178100_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0014698
Physical Location & Seq
Reverse (-)
18311183 .. 18314027
2845 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G178100.1

Sequence Viewer

Length: 1212 bp
ATGGGTCGAAGCAGAAATAGAAGAAGGAAGCAGCAGAAGCTTGTTAATCTGGATTGGACAGAGCTGCCTCGTGGTATCCTTGAGATCATCTTTGAGCGACTGACTGTGACTGATTGTATATCTGTTAGTGATGTTTGCAAAGCCTGGAGACATGTTGTTGCACAAGAACTTGCTGGTTGGCAAAGCCGTGGTGTGCCATGGCTCATGATGTCTGGCAAAGATAGAGAGGTAAGAACTTGTATTAGCATACTACAAAAACAACATTGGGACATTGTGCTTCCCGAGGCTTATGGAAGATATTGTTGGGGATCATATCAAGATTGGTTGATTCTAGTAAAACATATTGGTTGTTTCTATCTTGAGATTAGCTTGTTGAATCCATTCTCTAGGAACAAAACTGATCTTCCCAAAACATGGAACTTTTATCATAAGATTGTTCTCTCAGGGCTTCCCATCCTTGACAACTATGTTTGCATGCTTGTTCATAGTCAATGTCGGGAGCTTTCTTTTTGGGTCCCAGGAGCTGAATTATGGTTTAAACATAAACTGGATGGTGATCCATTTGAGGATGCTGTCTTCTGTGATGGAAGTTTCTATCTTATAAGCAATGATTATAACATTTGGCAGATTAAGTCTGCTAATATCTTTGCTAGCATTAGAACATATGATGCTTATGAGGTAAAAATAGATTGTCATGAAGTAATAATGTCAGAGGAGCAGGAAAATAGTGGTGTGTTGAAGTATCTTGTGGAATCTTGTGGGGAGCTTCTTCTTGTTTGTAGGCTTTATAACACCAAAGCAGAGGCTGTTCTTGAAACACATGATTTCAAAGTATATTCATTGGATTTTAGCCTGATGTCCTGGAAGAGGGTACATGATTTGGGGGATAAAATCTTATTTCTAGGCAAATGTTGTTCGCGGTCTGTTTCTTCGACGGAACTCGGTGTTGCGATGAGGAATTGTATCTATTTCTCTAATGATCATGCTGCTCCATGGTGGAACGAATGGGATTCTGATCATCTTTATGGAATTTCAGCTAGGCTTAATCTGAATAATGCTGGAAGAAAGGATTGGGGCGTGTTCAGCCTTGGCAATGGAACTCATGAGGATTTTTGCTTTCGTGGCAATCGAGACAGATGGGGACCGATTTGGTTAACTTGCCCCCAATGGTGGTGCTGTAGGAAATTGGCTGTTAACCGATATAGTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

404

Amino Acids

47.14

Weight (kDa)

7.13

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27200
malus_domestica MD13G1035900.v1.1
prunus_persica Prupe.6G174300_v2.0.a1 Prupe.6G178100_v2.0.a1
pyrus_communis pycom13g03130 pycom16g03310
rosa_chinensis RchiOBHm_Chr4g0434481
rosa_laevigata RLG00000006668
rosa_multiflora Rmu_sc0002251.1_g000016 Rmu_sc0005899.1_g000009
rosa_roxburghii Rroxscaffold_5G00375830
rosa_rugosa Rorug04G0277000
rosa_samantha Rh4AG332600 Rh4BG340400 Rh4CG355600 Rh4DG335800
rosa_wichuraiana Rw4G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 602, 615, 789
AccB7I CCANNNNNTGG 1 cut(s) 414
AccII CGCG 1 cut(s) 919
AciI CCGC 1 cut(s) 919
AclWI GGATC 2 cut(s) 316, 551
AcsI RAATTY 1 cut(s) 1029
AfaI GTAC 1 cut(s) 873
AfiI CCNNNNNNNGG 3 cut(s) 414, 867, 1170
AflIII ACRYGT 1 cut(s) 151
AgsI TTSAA 4 cut(s) 376, 739, 815, 829
AjnI CCWGG 3 cut(s) 143, 517, 860
AjuI GAANNNNNNNTTGG 4 cut(s) 286, 318, 1054, 1086
AluBI AGCT 7 cut(s) 40, 64, 369, 502, 524, 766, 1037
AluI AGCT 7 cut(s) 40, 64, 369, 502, 524, 766, 1037
Alw26I GTCTC 2 cut(s) 142, 1125
AlwI GGATC 2 cut(s) 316, 551
AlwNI CAGNNNCTG 2 cut(s) 524, 806
Ama87I CYCGRG 1 cut(s) 281
ApeKI GCWGC 3 cut(s) 31, 64, 986
ApoI RAATTY 1 cut(s) 1029
Asp700I GAANNNNTTC 1 cut(s) 380
AspS9I GGNCC 2 cut(s) 514, 1142
AsuHPI GGTGA 1 cut(s) 566
AsuNHI GCTAGC 1 cut(s) 650
AvaI CYCGRG 1 cut(s) 281
AvaII GGWCC 2 cut(s) 514, 1142
BauI CACGAG 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 568
BbvI GCAGC 3 cut(s) 43, 51, 973
BccI CCATC 4 cut(s) 461, 545, 578, 1131
BceAI ACGGC 1 cut(s) 171
BciT130I CCWGG 3 cut(s) 145, 519, 862
BciVI GTATCC 1 cut(s) 86
BclI TGATCA 2 cut(s) 979, 1015
BcoDI GTCTC 2 cut(s) 142, 1125
BfaI CTAG 6 cut(s) 332, 387, 651, 902, 1038, 1210
BfmI CTRYAG 1 cut(s) 1177
BfuI GTATCC 1 cut(s) 86
BisI GCNGC 3 cut(s) 32, 65, 987
BlsI GCNGC 3 cut(s) 33, 66, 988
Bme1390I CCNGG 3 cut(s) 145, 519, 862
Bme18I GGWCC 2 cut(s) 514, 1142
BmeT110I CYCGRG 1 cut(s) 281
BmgT120I GGNCC 2 cut(s) 514, 1142
BmiI GGNNCC 3 cut(s) 515, 516, 1143
BmrFI CCNGG 3 cut(s) 145, 519, 862
BmsI GCATC 2 cut(s) 559, 658
BmtI GCTAGC 1 cut(s) 654
BpiI GAAGAC 1 cut(s) 568
BpmI CTGGAG 1 cut(s) 166
BpuEI CTTGAG 2 cut(s) 101, 380
BsaBI GATNNNNATC 2 cut(s) 555, 1014
BsaJI CCNNGG 6 cut(s) 187, 197, 282, 517, 992, 1087
Bsc4I CCNNNNNNNGG 3 cut(s) 414, 867, 1170
Bse1I ACTGG 1 cut(s) 552
Bse3DI GCAATG 2 cut(s) 613, 1099
Bse8I GATNNNNATC 2 cut(s) 555, 1014
BseBI CCWGG 3 cut(s) 145, 519, 862
BseDI CCNNGG 6 cut(s) 187, 197, 282, 517, 992, 1087
BseGI GGATG 3 cut(s) 453, 556, 574
BseJI GATNNNNATC 2 cut(s) 555, 1014
BseLI CCNNNNNNNGG 3 cut(s) 414, 867, 1170
BseMI GCAATG 2 cut(s) 613, 1099
BseMII CTCAG 1 cut(s) 456
BseNI ACTGG 1 cut(s) 552
BseRI GAGGAG 1 cut(s) 728
BseXI GCAGC 3 cut(s) 43, 51, 973
Bsh1236I CGCG 1 cut(s) 919
BsiHKCI CYCGRG 1 cut(s) 281
BslFI GGGAC 3 cut(s) 281, 500, 1155
BslI CCNNNNNNNGG 3 cut(s) 414, 867, 1170
BsmAI GTCTC 2 cut(s) 142, 1125
BsmFI GGGAC 3 cut(s) 281, 500, 1155
BsoBI CYCGRG 1 cut(s) 281
Bsp143I GATC 6 cut(s) 84, 308, 400, 556, 979, 1015
Bsp19I CCATGG 2 cut(s) 197, 992
BspACI CCGC 1 cut(s) 919
BspCNI CTCAG 1 cut(s) 455
BspFNI CGCG 1 cut(s) 919
BspHI TCATGA 3 cut(s) 204, 694, 1102
BspLI GGNNCC 3 cut(s) 515, 516, 1143
BspOI GCTAGC 1 cut(s) 654
BspPI GGATC 2 cut(s) 316, 551
BsrDI GCAATG 2 cut(s) 613, 1099
BsrI ACTGG 1 cut(s) 552
BssECI CCNNGG 6 cut(s) 187, 197, 282, 517, 992, 1087
BssMI GATC 6 cut(s) 84, 308, 400, 556, 979, 1015
BssSI CACGAG 1 cut(s) 69
BssT1I CCWWGG 3 cut(s) 197, 992, 1087
Bst2BI CACGAG 1 cut(s) 69
Bst2UI CCWGG 3 cut(s) 145, 519, 862
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 1 cut(s) 860
BstC8I GCNNGC 2 cut(s) 476, 652
BstDEI CTNAG 1 cut(s) 442
BstDSI CCRYGG 3 cut(s) 187, 197, 992
BstENI CCTNNNNNAGG 1 cut(s) 865
BstF5I GGATG 3 cut(s) 453, 556, 574
BstFNI CGCG 1 cut(s) 919
BstKTI GATC 6 cut(s) 87, 311, 403, 559, 982, 1018
BstMAI GTCTC 2 cut(s) 142, 1125
BstMBI GATC 6 cut(s) 84, 308, 400, 556, 979, 1015
BstMWI GCNNNNNNNGC 3 cut(s) 37, 1083, 1122
BstNI CCWGG 3 cut(s) 145, 519, 862
BstNSI RCATGY 2 cut(s) 155, 478
BstSCI CCNGG 3 cut(s) 143, 517, 860
BstSFI CTRYAG 1 cut(s) 1177
BstUI CGCG 1 cut(s) 919
BstV1I GCAGC 3 cut(s) 43, 51, 973
BstV2I GAAGAC 1 cut(s) 568
BsuI GTATCC 1 cut(s) 86
BtgI CCRYGG 3 cut(s) 187, 197, 992
BtgZI GCGATG 1 cut(s) 965
BtsCI GGATG 3 cut(s) 453, 556, 574
Cac8I GCNNGC 2 cut(s) 476, 652
CaiI CAGNNNCTG 2 cut(s) 524, 806
CciI TCATGA 3 cut(s) 204, 694, 1102
Cfr13I GGNCC 2 cut(s) 514, 1142
Csp6I GTAC 1 cut(s) 872
CviQI GTAC 1 cut(s) 872
DdeI CTNAG 1 cut(s) 442
DpnI GATC 6 cut(s) 86, 310, 402, 558, 981, 1017
DpnII GATC 6 cut(s) 84, 308, 400, 556, 979, 1015
DraI TTTAAA 1 cut(s) 538
Eam1104I CTCTTC 1 cut(s) 860
EarI CTCTTC 1 cut(s) 860
Eco130I CCWWGG 3 cut(s) 197, 992, 1087
Eco47I GGWCC 2 cut(s) 514, 1142
Eco88I CYCGRG 1 cut(s) 281
EcoNI CCTNNNNNAGG 1 cut(s) 865
EcoO109I RGGNCCY 1 cut(s) 514
EcoRII CCWGG 3 cut(s) 143, 517, 860
EcoT14I CCWWGG 3 cut(s) 197, 992, 1087
ErhI CCWWGG 3 cut(s) 197, 992, 1087
FaqI GGGAC 3 cut(s) 281, 500, 1155
FauNDI CATATG 1 cut(s) 664
FbaI TGATCA 2 cut(s) 979, 1015
Fnu4HI GCNGC 3 cut(s) 32, 65, 987
FokI GGATG 3 cut(s) 440, 563, 581
Fsp4HI GCNGC 3 cut(s) 32, 65, 987
FspBI CTAG 6 cut(s) 332, 387, 651, 902, 1038, 1210
GluI GCNGC 3 cut(s) 32, 65, 987
GsuI CTGGAG 1 cut(s) 166
HincII GTYRAC 2 cut(s) 1155, 1195
HindII GTYRAC 2 cut(s) 1155, 1195
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 4 cut(s) 328, 376, 752, 1010
HpaI GTTAAC 2 cut(s) 1155, 1195
HphI GGTGA 1 cut(s) 566
Hpy166II GTNNAC 2 cut(s) 1155, 1195
Hpy188I TCNGA 3 cut(s) 712, 1015, 1050
Hpy8I GTNNAC 2 cut(s) 1155, 1195
Hpy99I CGWCG 1 cut(s) 937
HpyAV CCTTC 1 cut(s) 18
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 3 cut(s) 138, 161, 474
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 1083, 1122
HpyF3I CTNAG 1 cut(s) 442
KflI GGGWCCC 1 cut(s) 514
Ksp22I TGATCA 2 cut(s) 979, 1015
KspAI GTTAAC 2 cut(s) 1155, 1195
Kzo9I GATC 6 cut(s) 84, 308, 400, 556, 979, 1015
LmnI GCTCC 5 cut(s) 499, 521, 715, 763, 994
Lsp1109I GCAGC 3 cut(s) 43, 51, 973
LweI GCATC 2 cut(s) 559, 658
MaeI CTAG 6 cut(s) 332, 387, 651, 902, 1038, 1210
MaeIII GTNAC 2 cut(s) 106, 1205
MalI GATC 6 cut(s) 86, 310, 402, 558, 981, 1017
MboI GATC 6 cut(s) 84, 308, 400, 556, 979, 1015
MboII GAAGA 8 cut(s) 33, 306, 395, 568, 761, 877, 921, 1074
MluCI AATT 4 cut(s) 527, 958, 1029, 1184
MroXI GAANNNNTTC 1 cut(s) 380
MseI TTAA 6 cut(s) 45, 537, 630, 1044, 1154, 1194
MslI CAYNNNNRTG 1 cut(s) 1023
MspR9I CCNGG 3 cut(s) 145, 519, 862
MssI GTTTAAAC 1 cut(s) 538
MvaI CCWGG 3 cut(s) 145, 519, 862
MvnI CGCG 1 cut(s) 919
MwoI GCNNNNNNNGC 3 cut(s) 37, 1083, 1122
NcoI CCATGG 2 cut(s) 197, 992
NdeI CATATG 1 cut(s) 664
NdeII GATC 6 cut(s) 84, 308, 400, 556, 979, 1015
NheI GCTAGC 1 cut(s) 650
NlaIV GGNNCC 3 cut(s) 515, 516, 1143
NmuCI GTSAC 1 cut(s) 106
NspI RCATGY 2 cut(s) 155, 478
PaeI GCATGC 1 cut(s) 478
PagI TCATGA 3 cut(s) 204, 694, 1102
PciI ACATGT 1 cut(s) 151
PcsI WCGNNNNNNNCGW 1 cut(s) 1126
PdmI GAANNNNTTC 1 cut(s) 380
PfeI GAWTC 4 cut(s) 328, 376, 752, 1010
PflMI CCANNNNNTGG 1 cut(s) 414
PfoI TCCNGGA 1 cut(s) 860
PkrI GCNGC 3 cut(s) 33, 66, 988
PmeI GTTTAAAC 1 cut(s) 538
PpuMI RGGWCCY 1 cut(s) 514
PscI ACATGT 1 cut(s) 151
PsiI TTATAA 3 cut(s) 602, 615, 789
Psp5II RGGWCCY 1 cut(s) 514
Psp6I CCWGG 3 cut(s) 143, 517, 860
PspGI CCWGG 3 cut(s) 143, 517, 860
PspN4I GGNNCC 3 cut(s) 515, 516, 1143
PspPI GGNCC 2 cut(s) 514, 1142
PspPPI RGGWCCY 1 cut(s) 514
PstNI CAGNNNCTG 2 cut(s) 524, 806
RsaI GTAC 1 cut(s) 873
RsaNI GTAC 1 cut(s) 872
RseI CAYNNNNRTG 1 cut(s) 1023
SaqAI TTAA 6 cut(s) 45, 537, 630, 1044, 1154, 1194
SatI GCNGC 3 cut(s) 32, 65, 987
Sau3AI GATC 6 cut(s) 84, 308, 400, 556, 979, 1015
Sau96I GGNCC 2 cut(s) 514, 1142
ScrFI CCNGG 3 cut(s) 145, 519, 862
SetI ASST 9 cut(s) 42, 66, 231, 371, 504, 526, 681, 768, 1039
SfaNI GCATC 2 cut(s) 559, 658
SfcI CTRYAG 1 cut(s) 1177
SinI GGWCC 2 cut(s) 514, 1142
SmiMI CAYNNNNRTG 1 cut(s) 1023
SmlI CTYRAG 2 cut(s) 80, 359
SmoI CTYRAG 2 cut(s) 80, 359
SphI GCATGC 1 cut(s) 478
Sse9I AATT 4 cut(s) 527, 958, 1029, 1184
SsiI CCGC 1 cut(s) 919
SspMI CTAG 6 cut(s) 332, 387, 651, 902, 1038, 1210
StyD4I CCNGG 3 cut(s) 143, 517, 860
StyI CCWWGG 3 cut(s) 197, 992, 1087
TaaI ACNGT 1 cut(s) 106
TaqI TCGA 3 cut(s) 7, 932, 1129
TaqII GACCGA 1 cut(s) 1159
TasI AATT 4 cut(s) 527, 958, 1029, 1184
TfiI GAWTC 4 cut(s) 328, 376, 752, 1010
Tru1I TTAA 6 cut(s) 45, 537, 630, 1044, 1154, 1194
Tru9I TTAA 6 cut(s) 45, 537, 630, 1044, 1154, 1194
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 3 cut(s) 31, 64, 986
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 3 cut(s) 473, 711, 828
TspGWI ACGGA 1 cut(s) 950
Van91I CCANNNNNTGG 1 cut(s) 414
VpaK11BI GGWCC 2 cut(s) 514, 1142
XagI CCTNNNNNAGG 1 cut(s) 865
XapI RAATTY 1 cut(s) 1029
XceI RCATGY 2 cut(s) 155, 478
XmnI GAANNNNTTC 1 cut(s) 380
XspI CTAG 6 cut(s) 332, 387, 651, 902, 1038, 1210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.