Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0015520

Physical Location & Seq

Genomic Coordinates Reverse (-)

20142714 .. 20145091

Gene Structure 2378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G194400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGACGTTAGAAGCTGTGGTGTTACAAGCAGACCGATACAGCTATGGTTTCAAGGATTTCCACGCCGTAGGAGGAGGAGGAGGAGGATCTTGGAGCCATGGCTTTGGTTTTGGAGAAGATCATCAGGAAGAGAAAGTGTACACTGATCATCATATGCTCAACAATGATGTAGGTCAACAAGGTTTCAATAACCCGAGTTTGGAAGCTTCAATGCTGCAAAGTGTCAACGACTTTGAAACCAACAGTGGGCCGGCTTTCAATCGTGCGTTCTCTTCAACAGAAGCTCCGGCAGCTTCGACAGGCCGGAGAAAGAGACGGCGCATCCAAAACATCAAGAACAAGGAAGATATGGAGACTCAGAGGATGACCCACATTGCTGTTGAACGCAACCGGAGAAAACAAATGAACGACTACCTTGCTGCGCTCCGAGCTATGATGCCTGCTTGCTACGCCCAAAGAGGTGACCAAGCTTCAATCATAGGTGGAGCTATTAATTTCGTGAAGGAGCTTGAGCAACTTTTGCAATCTCTAGAGGGCCATAGACGAACCGAGCAACAACACTTGAATTTGGCCTCAATCTTCTCAAGCTTCTTCACCTTCCCTCAGTATTCGACCTGCTTGAACAGTCATGGCCATGGCGTATATAATAGCTCAGTGCATTCAAATGAGTTAATGGCCGAGAAGCAGTCTGCCATTGCAGATGTTGAAGTGACAATGGTGGAAAGCCATGCCAATGTTAAAGTGCTTATGAAAAAGCAACCCAAACAGCTTTTGAAGATGGTGCTTGGTTTGCACTCCCTGGGCCTTATGATTCTTCACGTTAATGTCACAACTGCGGATAATATGATCCTCTACACTTTCAGCGTCAAGGTTGAAGATAACTCTCAGCTGACCTCGATGAATGAGATTGCGGCTGATGTGTATGAAATGGTGGGTAGGATTCAAGAGGAAGCTCAGCTTTTAGCTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

324

Amino Acids

36.12

Weight (kDa)

6.16

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015520)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20160 FvH4_1g20160
malus_domestica	MD01G1037100.v1.1
prunus_persica	Prupe.6G194400_v2.0.a1
pyrus_communis	pycom01g06400
rosa_chinensis	RchiOBHm_Chr2g0112221
rosa_laevigata	RLG00000017960
rosa_multiflora	Rmu_sc0001386.1_g000016 Rmu_sc0004467.1_g000007
rosa_roxburghii	Rroxscaffold_2G00131650
rosa_rugosa	Rorug02G0179300
rosa_samantha	Rh2AG231500 Rh2BG244700 Rh2CG235900 Rh2DG239400
rosa_wichuraiana	Rw2G017940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	623
AciI	CCGC	2 cut(s)	836, 911
AclWI	GGATC	2 cut(s)	94, 841
AcoI	YGGCCR	2 cut(s)	631, 675
AcsI	RAATTY	1 cut(s)	565
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	2 cut(s)	199, 246
AjnI	CCWGG	1 cut(s)	798
Alw26I	GTCTC	2 cut(s)	307, 347
AlwI	GGATC	2 cut(s)	94, 841
Ama87I	CYCGRG	1 cut(s)	193
AoxI	GGCC	7 cut(s)	248, 301, 535, 570, 631, 675, 802
ApeKI	GCWGC	3 cut(s)	214, 290, 419
ApoI	RAATTY	1 cut(s)	565
AseI	ATTAAT	1 cut(s)	492
AspLEI	GCGC	2 cut(s)	321, 424
AspS9I	GGNCC	3 cut(s)	248, 535, 802
AsuHPI	GGTGA	2 cut(s)	473, 586
AvaI	CYCGRG	1 cut(s)	193
BalI	TGGCCA	1 cut(s)	633
BbvI	GCAGC	3 cut(s)	201, 302, 406
BccI	CCATC	1 cut(s)	772
BceAI	ACGGC	2 cut(s)	50, 332
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciT130I	CCWGG	1 cut(s)	800
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	2 cut(s)	307, 347
BfaI	CTAG	1 cut(s)	530
BfuAI	ACCTGC	1 cut(s)	623
BisI	GCNGC	4 cut(s)	215, 291, 420, 912
BlpI	GCTNAGC	1 cut(s)	954
BlsI	GCNGC	4 cut(s)	216, 292, 421, 913
Bme1390I	CCNGG	1 cut(s)	800
BmeT110I	CYCGRG	1 cut(s)	193
BmgT120I	GGNCC	3 cut(s)	248, 535, 802
BmiI	GGNNCC	1 cut(s)	95
BmrFI	CCNGG	1 cut(s)	800
BmsI	GCATC	2 cut(s)	330, 426
Bpu1102I	GCTNAGC	1 cut(s)	954
BpuEI	CTTGAG	2 cut(s)	530, 568
BsaJI	CCNNGG	4 cut(s)	97, 634, 798, 799
BsaWI	WCCGGW	1 cut(s)	390
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 246
Bse118I	RCCGGY	1 cut(s)	250
Bse3DI	GCAATG	2 cut(s)	372, 693
BseBI	CCWGG	1 cut(s)	800
BseDI	CCNNGG	4 cut(s)	97, 634, 798, 799
BseGI	GGATG	2 cut(s)	321, 369
BseLI	CCNNNNNNNGG	2 cut(s)	199, 246
BseMI	GCAATG	2 cut(s)	372, 693
BseMII	CTCAG	5 cut(s)	371, 617, 666, 899, 968
BseRI	GAGGAG	4 cut(s)	87, 90, 93, 96
BseXI	GCAGC	3 cut(s)	201, 302, 406
BshFI	GGCC	7 cut(s)	250, 303, 537, 572, 633, 677, 804
BsiHKCI	CYCGRG	1 cut(s)	193
BsiSI	CCGG	4 cut(s)	251, 287, 304, 391
BslI	CCNNNNNNNGG	2 cut(s)	199, 246
BsmAI	GTCTC	2 cut(s)	307, 347
BsmBI	CGTCTC	1 cut(s)	307
BsmI	GAATGC	1 cut(s)	658
BsnI	GGCC	7 cut(s)	250, 303, 537, 572, 633, 677, 804
BsoBI	CYCGRG	1 cut(s)	193
Bsp1407I	TGTACA	1 cut(s)	138
Bsp143I	GATC	4 cut(s)	86, 118, 145, 846
Bsp1720I	GCTNAGC	1 cut(s)	954
Bsp19I	CCATGG	2 cut(s)	97, 634
BspACI	CCGC	2 cut(s)	836, 911
BspANI	GGCC	7 cut(s)	250, 303, 537, 572, 633, 677, 804
BspCNI	CTCAG	5 cut(s)	370, 616, 665, 898, 967
BspLI	GGNNCC	1 cut(s)	95
BspMI	ACCTGC	1 cut(s)	623
BspPI	GGATC	2 cut(s)	94, 841
BsrDI	GCAATG	2 cut(s)	372, 693
BsrFI	RCCGGY	1 cut(s)	250
BsrGI	TGTACA	1 cut(s)	138
BssAI	RCCGGY	1 cut(s)	250
BssECI	CCNNGG	4 cut(s)	97, 634, 798, 799
BssMI	GATC	4 cut(s)	86, 118, 145, 846
BssT1I	CCWWGG	2 cut(s)	97, 634
Bst2UI	CCWGG	1 cut(s)	800
Bst4CI	ACNGT	2 cut(s)	245, 626
Bst6I	CTCTTC	2 cut(s)	123, 277
BstAPI	GCANNNNNTGC	1 cut(s)	520
BstAUI	TGTACA	1 cut(s)	138
BstC8I	GCNNGC	3 cut(s)	252, 441, 445
BstDEI	CTNAG	5 cut(s)	357, 603, 652, 885, 954
BstDSI	CCRYGG	2 cut(s)	97, 634
BstEII	GGTNACC	1 cut(s)	461
BstF5I	GGATG	2 cut(s)	321, 369
BstHHI	GCGC	2 cut(s)	321, 424
BstKTI	GATC	4 cut(s)	89, 121, 148, 849
BstMAI	GTCTC	2 cut(s)	307, 347
BstMBI	GATC	4 cut(s)	86, 118, 145, 846
BstMWI	GCNNNNNNNGC	5 cut(s)	290, 428, 449, 520, 790
BstNI	CCWGG	1 cut(s)	800
BstPI	GGTNACC	1 cut(s)	461
BstSCI	CCNGG	1 cut(s)	798
BstV1I	GCAGC	3 cut(s)	201, 302, 406
BstX2I	RGATCY	1 cut(s)	86
BstXI	CCANNNNNNTGG	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	86
BsuRI	GGCC	7 cut(s)	250, 303, 537, 572, 633, 677, 804
BtgI	CCRYGG	2 cut(s)	97, 634
BtsCI	GGATG	2 cut(s)	321, 369
BtsIMutI	CAGTG	3 cut(s)	141, 250, 660
BveI	ACCTGC	1 cut(s)	623
Cac8I	GCNNGC	3 cut(s)	252, 441, 445
CfoI	GCGC	2 cut(s)	321, 424
Cfr10I	RCCGGY	1 cut(s)	250
Cfr13I	GGNCC	3 cut(s)	248, 535, 802
CseI	GACGC	1 cut(s)	853
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	4 cut(s)	98, 629, 635, 728
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	5 cut(s)	357, 603, 652, 885, 954
DpnI	GATC	4 cut(s)	88, 120, 147, 848
DpnII	GATC	4 cut(s)	86, 118, 145, 846
EaeI	YGGCCR	2 cut(s)	631, 675
Eam1104I	CTCTTC	2 cut(s)	123, 277
EarI	CTCTTC	2 cut(s)	123, 277
Eco130I	CCWWGG	2 cut(s)	97, 634
Eco88I	CYCGRG	1 cut(s)	193
Eco91I	GGTNACC	1 cut(s)	461
EcoO65I	GGTNACC	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	798
EcoT14I	CCWWGG	2 cut(s)	97, 634
ErhI	CCWWGG	2 cut(s)	97, 634
Esp3I	CGTCTC	1 cut(s)	307
FaeI	CATG	4 cut(s)	101, 632, 638, 731
FalI	AAGNNNNNCTT	1 cut(s)	942
FatI	CATG	4 cut(s)	97, 628, 634, 727
FauNDI	CATATG	1 cut(s)	153
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	4 cut(s)	215, 291, 420, 912
FokI	GGATG	2 cut(s)	308, 376
Fsp4HI	GCNGC	4 cut(s)	215, 291, 420, 912
FspBI	CTAG	1 cut(s)	530
GlaI	GCGC	2 cut(s)	320, 423
GluI	GCNGC	4 cut(s)	215, 291, 420, 912
HaeIII	GGCC	7 cut(s)	250, 303, 537, 572, 633, 677, 804
HapII	CCGG	4 cut(s)	251, 287, 304, 391
HgaI	GACGC	1 cut(s)	853
HhaI	GCGC	2 cut(s)	321, 424
Hin1II	CATG	4 cut(s)	101, 632, 638, 731
Hin6I	GCGC	2 cut(s)	319, 422
HinP1I	GCGC	2 cut(s)	319, 422
HincII	GTYRAC	2 cut(s)	176, 226
HindII	GTYRAC	2 cut(s)	176, 226
HindIII	AAGCTT	3 cut(s)	204, 468, 586
HinfI	GANTC	3 cut(s)	355, 811, 940
HpaII	CCGG	4 cut(s)	251, 287, 304, 391
HphI	GGTGA	2 cut(s)	473, 586
Hpy166II	GTNNAC	4 cut(s)	139, 141, 176, 226
Hpy188I	TCNGA	2 cut(s)	360, 428
Hpy188III	TCNNGA	5 cut(s)	125, 334, 499, 530, 944
Hpy8I	GTNNAC	4 cut(s)	139, 141, 176, 226
HpyAV	CCTTC	2 cut(s)	496, 607
HpyCH4III	ACNGT	2 cut(s)	245, 626
HpyCH4IV	ACGT	2 cut(s)	5, 819
HpyCH4V	TGCA	5 cut(s)	217, 523, 658, 698, 793
HpyF10VI	GCNNNNNNNGC	5 cut(s)	290, 428, 449, 520, 790
HpyF3I	CTNAG	5 cut(s)	357, 603, 652, 885, 954
HpySE526I	ACGT	2 cut(s)	5, 819
Hsp92II	CATG	4 cut(s)	101, 632, 638, 731
HspAI	GCGC	2 cut(s)	319, 422
KroI	GCCGGC	1 cut(s)	250
KroNI	GCCGGC	1 cut(s)	252
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	4 cut(s)	86, 118, 145, 846
LmnI	GCTCC	5 cut(s)	93, 289, 429, 485, 505
Lsp1109I	GCAGC	3 cut(s)	201, 302, 406
LweI	GCATC	2 cut(s)	330, 426
MaeI	CTAG	1 cut(s)	530
MaeII	ACGT	2 cut(s)	5, 819
MaeIII	GTNAC	4 cut(s)	21, 461, 709, 826
MalI	GATC	4 cut(s)	88, 120, 147, 848
MboI	GATC	4 cut(s)	86, 118, 145, 846
MboII	GAAGA	9 cut(s)	128, 140, 264, 356, 571, 583, 787, 806, 887
MflI	RGATCY	1 cut(s)	86
MlsI	TGGCCA	1 cut(s)	633
MluCI	AATT	2 cut(s)	493, 565
MluNI	TGGCCA	1 cut(s)	633
MlyI	GAGTC	1 cut(s)	349
Mox20I	TGGCCA	1 cut(s)	633
MroNI	GCCGGC	1 cut(s)	250
MscI	TGGCCA	1 cut(s)	633
MseI	TTAA	4 cut(s)	492, 671, 738, 822
MslI	CAYNNNNRTG	4 cut(s)	633, 663, 732, 822
Msp20I	TGGCCA	1 cut(s)	633
MspA1I	CMGCKG	1 cut(s)	889
MspI	CCGG	4 cut(s)	251, 287, 304, 391
MspR9I	CCNGG	1 cut(s)	800
Mva1269I	GAATGC	1 cut(s)	658
MvaI	CCWGG	1 cut(s)	800
MwoI	GCNNNNNNNGC	5 cut(s)	290, 428, 449, 520, 790
NaeI	GCCGGC	1 cut(s)	252
NcoI	CCATGG	2 cut(s)	97, 634
NdeI	CATATG	1 cut(s)	153
NdeII	GATC	4 cut(s)	86, 118, 145, 846
NgoMIV	GCCGGC	1 cut(s)	250
NlaIII	CATG	4 cut(s)	101, 632, 638, 731
NlaIV	GGNNCC	1 cut(s)	95
NmeAIII	GCCGAG	1 cut(s)	703
NmuCI	GTSAC	3 cut(s)	461, 709, 826
PasI	CCCWGGG	1 cut(s)	799
PctI	GAATGC	1 cut(s)	658
PdiI	GCCGGC	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	811, 940
PkrI	GCNGC	4 cut(s)	216, 292, 421, 913
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
PshBI	ATTAAT	1 cut(s)	492
Psp6I	CCWGG	1 cut(s)	798
PspEI	GGTNACC	1 cut(s)	461
PspGI	CCWGG	1 cut(s)	798
PspN4I	GGNNCC	1 cut(s)	95
PspPI	GGNCC	3 cut(s)	248, 535, 802
PsuI	RGATCY	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	889
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
RseI	CAYNNNNRTG	4 cut(s)	633, 663, 732, 822
SaqAI	TTAA	4 cut(s)	492, 671, 738, 822
SatI	GCNGC	4 cut(s)	215, 291, 420, 912
Sau3AI	GATC	4 cut(s)	86, 118, 145, 846
Sau96I	GGNCC	3 cut(s)	248, 535, 802
SchI	GAGTC	1 cut(s)	349
ScrFI	CCNGG	1 cut(s)	800
SfaNI	GCATC	2 cut(s)	330, 426
SmiMI	CAYNNNNRTG	4 cut(s)	633, 663, 732, 822
SmlI	CTYRAG	2 cut(s)	509, 583
SmoI	CTYRAG	2 cut(s)	509, 583
Sse9I	AATT	2 cut(s)	493, 565
SsiI	CCGC	2 cut(s)	836, 911
SspMI	CTAG	1 cut(s)	530
StyD4I	CCNGG	1 cut(s)	798
StyI	CCWWGG	2 cut(s)	97, 634
TaaI	ACNGT	2 cut(s)	245, 626
TaiI	ACGT	2 cut(s)	8, 822
TaqI	TCGA	3 cut(s)	296, 611, 896
TaqII	GACCGA	1 cut(s)	48
TasI	AATT	2 cut(s)	493, 565
TatI	WGTACW	1 cut(s)	138
TauI	GCSGC	1 cut(s)	914
TfiI	GAWTC	2 cut(s)	811, 940
Tru1I	TTAA	4 cut(s)	492, 671, 738, 822
Tru9I	TTAA	4 cut(s)	492, 671, 738, 822
TscAI	CASTG	3 cut(s)	148, 250, 660
TseFI	GTSAC	3 cut(s)	461, 709, 826
TseI	GCWGC	3 cut(s)	214, 290, 419
Tsp45I	GTSAC	3 cut(s)	461, 709, 826
TspDTI	ATGAA	4 cut(s)	419, 764, 914, 939
TspRI	CASTG	3 cut(s)	148, 250, 660
VspI	ATTAAT	1 cut(s)	492
XapI	RAATTY	1 cut(s)	565
XbaI	TCTAGA	1 cut(s)	529
XspI	CTAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.