Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001386.1

Orthogroup ID

OG0015520

Physical Location & Seq

Genomic Coordinates Forward (+)

56920 .. 57983

Gene Structure 1064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001386.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atgacgttagaagctgtggtgttccagccagacccatttagctgtggaaattgtctggaaggaagtagatcttggggccatggctttggtttcggaggagatgatgatcaacaagaaaaaggctacgttcaacatgatatgcccaacaatggtaatattgtagggcaaggccttatggggtactgttcaccgtcacaggtgagaatgcaaagtgtcaacaccggcaactctaattccacgcccgaaacctgcactggcaactccaacttcaacaattctttctctagcccgatggccaccacaggccggagaaaaaggcggcgcacgagaaacatcaagaacaaggaagaggtggagactcagaggatcacccacattgctgttgaacgcaatcggaggaagctcatgaatgactatttggccgcattgcgctctatgatgcctgcttcctatgcccaaaggggtgaccaagcatcaatcataggaggagccataaattttgtgaaggagcttgagcaacttctgcaatctttagaagccagtagaagaaccaaacaatcacacttggatttggcctccatattctcaaacttctttaccttccctcagtactcgacctgttcgagtactaacacccacggccatggccatagcgagtacatgaacaacaacttggtgcatccccacgagataatgggggagaagcggtcgggggcaattgcagatgtggaagtaacaatggtagaaagtcatgcgaacattaaagtgcttttgaaaagacacccaagacagctcttaaagatggtggttgggttgcactctctgcgtcttatgatccttcaccttaatgtctcaactatggatagcatgatcctctactctttcagcgtcaaggttagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

300

Amino Acids

33.54

Weight (kDa)

9.11

Isoelectric Point (pI)

57.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015520)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20160 FvH4_1g20160
malus_domestica	MD01G1037100.v1.1
prunus_persica	Prupe.6G194400_v2.0.a1
pyrus_communis	pycom01g06400
rosa_chinensis	RchiOBHm_Chr2g0112221
rosa_laevigata	RLG00000017960
rosa_multiflora	Rmu_sc0001386.1_g000016 Rmu_sc0004467.1_g000007
rosa_roxburghii	Rroxscaffold_2G00131650
rosa_rugosa	Rorug02G0179300
rosa_samantha	Rh2AG231500 Rh2BG244700 Rh2CG235900 Rh2DG239400
rosa_wichuraiana	Rw2G017940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	257
AciI	CCGC	3 cut(s)	319, 423, 706
AclWI	GGATC	3 cut(s)	374, 829, 865
AcoI	YGGCCR	4 cut(s)	294, 420, 640, 646
AcsI	RAATTY	1 cut(s)	496
AfaI	GTAC	4 cut(s)	182, 611, 628, 659
AfiI	CCNNNNNNNGG	2 cut(s)	149, 306
AgsI	TTSAA	4 cut(s)	131, 271, 386, 775
AjuI	GAANNNNNNNTTGG	6 cut(s)	55, 87, 401, 433, 656, 688
AluBI	AGCT	5 cut(s)	14, 42, 403, 511, 793
AluI	AGCT	5 cut(s)	14, 42, 403, 511, 793
Alw26I	GTCTC	2 cut(s)	350, 856
AlwI	GGATC	3 cut(s)	374, 829, 865
AoxI	GGCC	8 cut(s)	76, 169, 294, 304, 420, 573, 640, 646
ApoI	RAATTY	1 cut(s)	496
AspLEI	GCGC	2 cut(s)	324, 432
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	5 cut(s)	180, 211, 361, 476, 833
BalI	TGGCCA	2 cut(s)	296, 648
BauI	CACGAG	2 cut(s)	325, 686
BccI	CCATC	2 cut(s)	286, 796
BceAI	ACGGC	1 cut(s)	655
BclI	TGATCA	1 cut(s)	106
BcoDI	GTCTC	2 cut(s)	350, 856
BfaI	CTAG	1 cut(s)	285
BfuAI	ACCTGC	1 cut(s)	257
BglII	AGATCT	1 cut(s)	68
BisI	GCNGC	2 cut(s)	320, 423
BlsI	GCNGC	2 cut(s)	321, 424
BmcAI	AGTACT	2 cut(s)	611, 628
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	2 cut(s)	77, 490
BmsI	GCATC	3 cut(s)	429, 482, 688
BpuEI	CTTGAG	1 cut(s)	533
BsaBI	GATNNNNATC	1 cut(s)	105
BsaJI	CCNNGG	3 cut(s)	79, 637, 643
BsaXI	ACNNNNNCTCC	2 cut(s)	692, 722
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 306
Bse118I	RCCGGY	1 cut(s)	221
Bse1I	ACTGG	2 cut(s)	259, 540
Bse3DI	GCAATG	2 cut(s)	375, 425
Bse8I	GATNNNNATC	1 cut(s)	105
BseDI	CCNNGG	3 cut(s)	79, 637, 643
BseGI	GGATG	1 cut(s)	679
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	2 cut(s)	149, 306
BseMI	GCAATG	2 cut(s)	375, 425
BseMII	CTCAG	2 cut(s)	374, 620
BseNI	ACTGG	2 cut(s)	259, 540
BseRI	GAGGAG	2 cut(s)	111, 501
BsgI	GTGCAG	1 cut(s)	235
Bsh1285I	CGRYCG	1 cut(s)	710
BshFI	GGCC	8 cut(s)	78, 171, 296, 306, 422, 575, 642, 648
BsiEI	CGRYCG	1 cut(s)	710
BsiSI	CCGG	2 cut(s)	222, 307
BslI	CCNNNNNNNGG	2 cut(s)	149, 306
BsmAI	GTCTC	2 cut(s)	350, 856
BsmI	GAATGC	1 cut(s)	210
BsnI	GGCC	8 cut(s)	78, 171, 296, 306, 422, 575, 642, 648
Bsp143I	GATC	5 cut(s)	68, 106, 366, 834, 870
Bsp19I	CCATGG	2 cut(s)	79, 643
BspACI	CCGC	3 cut(s)	319, 423, 706
BspANI	GGCC	8 cut(s)	78, 171, 296, 306, 422, 575, 642, 648
BspCNI	CTCAG	2 cut(s)	373, 619
BspHI	TCATGA	1 cut(s)	405
BspLI	GGNNCC	2 cut(s)	77, 490
BspMI	ACCTGC	1 cut(s)	257
BspPI	GGATC	3 cut(s)	374, 829, 865
BsrDI	GCAATG	2 cut(s)	375, 425
BsrFI	RCCGGY	1 cut(s)	221
BsrI	ACTGG	2 cut(s)	259, 540
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	3 cut(s)	79, 637, 643
BssMI	GATC	5 cut(s)	68, 106, 366, 834, 870
BssSI	CACGAG	2 cut(s)	325, 686
BssT1I	CCWWGG	2 cut(s)	79, 643
Bst2BI	CACGAG	2 cut(s)	325, 686
Bst4CI	ACNGT	2 cut(s)	185, 192
Bst6I	CTCTTC	1 cut(s)	342
BstAPI	GCANNNNNTGC	2 cut(s)	523, 823
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	2 cut(s)	360, 606
BstDSI	CCRYGG	3 cut(s)	79, 637, 643
BstEII	GGTNACC	1 cut(s)	464
BstF5I	GGATG	1 cut(s)	679
BstHHI	GCGC	2 cut(s)	324, 432
BstKTI	GATC	5 cut(s)	71, 109, 369, 837, 873
BstMAI	GTCTC	2 cut(s)	350, 856
BstMBI	GATC	5 cut(s)	68, 106, 366, 834, 870
BstMCI	CGRYCG	1 cut(s)	710
BstMWI	GCNNNNNNNGC	3 cut(s)	452, 523, 823
BstPI	GGTNACC	1 cut(s)	464
BstX2I	RGATCY	1 cut(s)	68
BstXI	CCANNNNNNTGG	2 cut(s)	86, 644
BstYI	RGATCY	1 cut(s)	68
BsuRI	GGCC	8 cut(s)	78, 171, 296, 306, 422, 575, 642, 648
BtgI	CCRYGG	3 cut(s)	79, 637, 643
BtsCI	GGATG	1 cut(s)	679
BtsIMutI	CAGTG	1 cut(s)	252
BveI	ACCTGC	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	444
CciI	TCATGA	1 cut(s)	405
CfoI	GCGC	2 cut(s)	324, 432
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	76
CseI	GACGC	2 cut(s)	815, 877
Csp6I	GTAC	4 cut(s)	181, 610, 627, 658
CviAII	CATG	7 cut(s)	80, 134, 406, 644, 661, 752, 868
CviQI	GTAC	4 cut(s)	181, 610, 627, 658
DdeI	CTNAG	2 cut(s)	360, 606
DpnI	GATC	5 cut(s)	70, 108, 368, 836, 872
DpnII	GATC	5 cut(s)	68, 106, 366, 834, 870
EaeI	YGGCCR	4 cut(s)	294, 420, 640, 646
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco130I	CCWWGG	2 cut(s)	79, 643
Eco147I	AGGCCT	1 cut(s)	171
Eco91I	GGTNACC	1 cut(s)	464
EcoO65I	GGTNACC	1 cut(s)	464
EcoT14I	CCWWGG	2 cut(s)	79, 643
ErhI	CCWWGG	2 cut(s)	79, 643
FaeI	CATG	7 cut(s)	83, 137, 409, 647, 664, 755, 871
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FatI	CATG	7 cut(s)	79, 133, 405, 643, 660, 751, 867
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	320, 423
FokI	GGATG	1 cut(s)	666
Fsp4HI	GCNGC	2 cut(s)	320, 423
FspBI	CTAG	1 cut(s)	285
GlaI	GCGC	2 cut(s)	323, 431
GluI	GCNGC	2 cut(s)	320, 423
HaeIII	GGCC	8 cut(s)	78, 171, 296, 306, 422, 575, 642, 648
HapII	CCGG	2 cut(s)	222, 307
HgaI	GACGC	2 cut(s)	815, 877
HhaI	GCGC	2 cut(s)	324, 432
Hin1II	CATG	7 cut(s)	83, 137, 409, 647, 664, 755, 871
Hin6I	GCGC	2 cut(s)	322, 430
HinP1I	GCGC	2 cut(s)	322, 430
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	1 cut(s)	358
HpaII	CCGG	2 cut(s)	222, 307
HphI	GGTGA	5 cut(s)	180, 211, 361, 476, 833
Hpy166II	GTNNAC	2 cut(s)	188, 217
Hpy188I	TCNGA	3 cut(s)	95, 363, 396
Hpy188III	TCNNGA	3 cut(s)	56, 337, 406
Hpy8I	GTNNAC	2 cut(s)	188, 217
HpyAV	CCTTC	4 cut(s)	53, 499, 610, 848
HpyCH4III	ACNGT	2 cut(s)	185, 192
HpyCH4IV	ACGT	2 cut(s)	5, 126
HpyCH4V	TGCA	6 cut(s)	208, 252, 526, 679, 722, 817
HpyF10VI	GCNNNNNNNGC	3 cut(s)	452, 523, 823
HpyF3I	CTNAG	2 cut(s)	360, 606
HpySE526I	ACGT	2 cut(s)	5, 126
Hsp92II	CATG	7 cut(s)	83, 137, 409, 647, 664, 755, 871
HspAI	GCGC	2 cut(s)	322, 430
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	5 cut(s)	68, 106, 366, 834, 870
LmnI	GCTCC	2 cut(s)	488, 508
LweI	GCATC	3 cut(s)	429, 482, 688
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	2 cut(s)	5, 126
MaeIII	GTNAC	3 cut(s)	192, 464, 733
MalI	GATC	5 cut(s)	70, 108, 368, 836, 872
MboI	GATC	5 cut(s)	68, 106, 366, 834, 870
MboII	GAAGA	2 cut(s)	359, 558
MfeI	CAATTG	1 cut(s)	717
MflI	RGATCY	1 cut(s)	68
MlsI	TGGCCA	2 cut(s)	296, 648
MluCI	AATT	5 cut(s)	49, 232, 274, 496, 717
MluNI	TGGCCA	2 cut(s)	296, 648
MlyI	GAGTC	1 cut(s)	352
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	8 cut(s)	89, 343, 357, 390, 479, 586, 615, 884
Mox20I	TGGCCA	2 cut(s)	296, 648
MscI	TGGCCA	2 cut(s)	296, 648
MseI	TTAA	4 cut(s)	762, 797, 846, 901
MslI	CAYNNNNRTG	3 cut(s)	642, 764, 846
Msp20I	TGGCCA	2 cut(s)	296, 648
MspI	CCGG	2 cut(s)	222, 307
MunI	CAATTG	1 cut(s)	717
Mva1269I	GAATGC	1 cut(s)	210
MwoI	GCNNNNNNNGC	3 cut(s)	452, 523, 823
NcoI	CCATGG	2 cut(s)	79, 643
NdeII	GATC	5 cut(s)	68, 106, 366, 834, 870
NlaIII	CATG	7 cut(s)	83, 137, 409, 647, 664, 755, 871
NlaIV	GGNNCC	2 cut(s)	77, 490
NmuCI	GTSAC	2 cut(s)	192, 464
PagI	TCATGA	1 cut(s)	405
PceI	AGGCCT	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	620
PctI	GAATGC	1 cut(s)	210
PkrI	GCNGC	2 cut(s)	321, 424
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PspEI	GGTNACC	1 cut(s)	464
PspN4I	GGNNCC	2 cut(s)	77, 490
PspPI	GGNCC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	68
RsaI	GTAC	4 cut(s)	182, 611, 628, 659
RsaNI	GTAC	4 cut(s)	181, 610, 627, 658
RseI	CAYNNNNRTG	3 cut(s)	642, 764, 846
SaqAI	TTAA	4 cut(s)	762, 797, 846, 901
SatI	GCNGC	2 cut(s)	320, 423
Sau3AI	GATC	5 cut(s)	68, 106, 366, 834, 870
Sau96I	GGNCC	1 cut(s)	76
ScaI	AGTACT	2 cut(s)	611, 628
SchI	GAGTC	1 cut(s)	352
SfaNI	GCATC	3 cut(s)	429, 482, 688
SmiMI	CAYNNNNRTG	3 cut(s)	642, 764, 846
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	5 cut(s)	49, 232, 274, 496, 717
SseBI	AGGCCT	1 cut(s)	171
SsiI	CCGC	3 cut(s)	319, 423, 706
SspI	AATATT	1 cut(s)	157
SspMI	CTAG	1 cut(s)	285
StuI	AGGCCT	1 cut(s)	171
StyI	CCWWGG	2 cut(s)	79, 643
TaaI	ACNGT	2 cut(s)	185, 192
TaiI	ACGT	2 cut(s)	8, 129
TaqI	TCGA	2 cut(s)	614, 623
TasI	AATT	5 cut(s)	49, 232, 274, 496, 717
TatI	WGTACW	3 cut(s)	609, 626, 657
TauI	GCSGC	2 cut(s)	322, 425
Tru1I	TTAA	4 cut(s)	762, 797, 846, 901
Tru9I	TTAA	4 cut(s)	762, 797, 846, 901
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	2 cut(s)	192, 464
Tsp45I	GTSAC	2 cut(s)	192, 464
TspDTI	ATGAA	2 cut(s)	422, 677
TspRI	CASTG	1 cut(s)	259
XapI	RAATTY	1 cut(s)	496
XspI	CTAG	1 cut(s)	285
ZrmI	AGTACT	2 cut(s)	611, 628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.