U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g19540 |
| malus_domestica | MD01G1040600.v1.1 MD15G1311200.v1.1 |
| prunus_persica | Prupe.6G202800_v2.0.a1 Prupe.6G202800_v2.0.a1 Prupe.6G202800_v2.0.a1 Prupe.6G202800_v2.0.a1 Prupe.6G202800_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0111051 |
| rosa_laevigata | RLG00000017861 |
| rosa_multiflora | Rmu_sc0003994.1_g000002 |
| rosa_rugosa | Rorug02G0170700 |
| rosa_samantha | Rh2AG223100 Rh2BG235100 Rh2CG226600 Rh2DG230900 |
| rosa_wichuraiana | Rw2G017220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1428 |
| AccII | CGCG | 1 cut(s) | 1683 |
| AciI | CCGC | 8 cut(s) | 1172, 1196, 1237, 1618, 1681, 1687, 1789, 1943 |
| AclWI | GGATC | 2 cut(s) | 2207, 2220 |
| AcoI | YGGCCR | 2 cut(s) | 1365, 1982 |
| AcsI | RAATTY | 4 cut(s) | 210, 590, 705, 730 |
| AcuI | CTGAAG | 2 cut(s) | 30, 917 |
| AcvI | CACGTG | 1 cut(s) | 2174 |
| AcyI | GRCGYC | 1 cut(s) | 2154 |
| AfaI | GTAC | 3 cut(s) | 769, 1343, 1598 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 72, 168, 1671, 1729, 1954, 2196 |
| AflIII | ACRYGT | 2 cut(s) | 2173, 2218 |
| AjnI | CCWGG | 5 cut(s) | 336, 612, 1473, 1658, 1947 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1485, 1517 |
| Alw21I | GWGCWC | 2 cut(s) | 456, 1932 |
| Alw26I | GTCTC | 3 cut(s) | 858, 2145, 2295 |
| AlwI | GGATC | 2 cut(s) | 2207, 2220 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1457 |
| AoxI | GGCC | 9 cut(s) | 795, 1176, 1365, 1656, 1662, 1736, 1945, 1975, 1982 |
| ApaI | GGGCCC | 1 cut(s) | 1666 |
| ApeKI | GCWGC | 9 cut(s) | 46, 627, 778, 1304, 1326, 1581, 1611, 1694, 2225 |
| ApoI | RAATTY | 4 cut(s) | 210, 590, 705, 730 |
| AseI | ATTAAT | 1 cut(s) | 813 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 321, 1500 |
| AspLEI | GCGC | 1 cut(s) | 969 |
| AspS9I | GGNCC | 9 cut(s) | 1177, 1656, 1662, 1663, 1737, 1945, 1951, 1976, 2045 |
| AsuC2I | CCSGG | 2 cut(s) | 971, 1955 |
| AsuHPI | GGTGA | 5 cut(s) | 1228, 1525, 1751, 2080, 2120 |
| AvaII | GGWCC | 2 cut(s) | 1951, 2045 |
| BaeGI | GKGCMC | 1 cut(s) | 1666 |
| BalI | TGGCCA | 2 cut(s) | 1367, 1984 |
| BamHI | GGATCC | 1 cut(s) | 2212 |
| BanII | GRGCYC | 3 cut(s) | 976, 1666, 1824 |
| BbrPI | CACGTG | 1 cut(s) | 2174 |
| Bbv12I | GWGCWC | 2 cut(s) | 456, 1932 |
| BbvCI | CCTCAGC | 1 cut(s) | 1763 |
| BbvI | GCAGC | 9 cut(s) | 33, 639, 790, 1313, 1316, 1568, 1623, 1706, 2237 |
| BceAI | ACGGC | 2 cut(s) | 1317, 1624 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 914, 948, 1780, 1814 |
| BciT130I | CCWGG | 5 cut(s) | 338, 614, 1475, 1660, 1949 |
| BclI | TGATCA | 1 cut(s) | 523 |
| BcnI | CCSGG | 2 cut(s) | 971, 1955 |
| BcoDI | GTCTC | 3 cut(s) | 858, 2145, 2295 |
| BfaI | CTAG | 3 cut(s) | 783, 2117, 2327 |
| BfmI | CTRYAG | 1 cut(s) | 1184 |
| BfoI | RGCGCY | 1 cut(s) | 970 |
| Bme1390I | CCNGG | 7 cut(s) | 338, 614, 971, 1475, 1660, 1949, 1955 |
| Bme18I | GGWCC | 2 cut(s) | 1951, 2045 |
| BmgT120I | GGNCC | 9 cut(s) | 1177, 1656, 1662, 1663, 1737, 1945, 1951, 1976, 2045 |
| BmiI | GGNNCC | 3 cut(s) | 1664, 2047, 2214 |
| BmrFI | CCNGG | 7 cut(s) | 338, 614, 971, 1475, 1660, 1949, 1955 |
| BmrI | ACTGGG | 1 cut(s) | 688 |
| BmsI | GCATC | 1 cut(s) | 2101 |
| BmuI | ACTGGG | 1 cut(s) | 688 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1691, 1723 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1509, 1763 |
| BpuEI | CTTGAG | 2 cut(s) | 960, 2343 |
| BpuMI | CCSGG | 2 cut(s) | 971, 1955 |
| BsaAI | YACGTR | 1 cut(s) | 2174 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1399 |
| BsaHI | GRCGYC | 1 cut(s) | 2154 |
| BsaJI | CCNNGG | 5 cut(s) | 66, 912, 1659, 1698, 1979 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 543, 573, 1125, 1155 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 72, 168, 1671, 1729, 1954, 2196 |
| Bse1I | ACTGG | 4 cut(s) | 683, 769, 1368, 2369 |
| Bse3DI | GCAATG | 2 cut(s) | 1689, 2256 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1399 |
| BseBI | CCWGG | 5 cut(s) | 338, 614, 1475, 1660, 1949 |
| BseDI | CCNNGG | 5 cut(s) | 66, 912, 1659, 1698, 1979 |
| BseJI | GATNNNNATC | 1 cut(s) | 1399 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 72, 168, 1671, 1729, 1954, 2196 |
| BseMI | GCAATG | 2 cut(s) | 1689, 2256 |
| BseMII | CTCAG | 7 cut(s) | 110, 279, 453, 500, 788, 1116, 1777 |
| BseNI | ACTGG | 4 cut(s) | 683, 769, 1368, 2369 |
| BseRI | GAGGAG | 4 cut(s) | 97, 528, 1367, 1772 |
| BseSI | GKGCMC | 1 cut(s) | 1666 |
| BseXI | GCAGC | 9 cut(s) | 33, 639, 790, 1313, 1316, 1568, 1623, 1706, 2237 |
| BseYI | CCCAGC | 2 cut(s) | 1179, 1572 |
| BsgI | GTGCAG | 1 cut(s) | 1227 |
| Bsh1236I | CGCG | 1 cut(s) | 1683 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1681, 1789 |
| BshFI | GGCC | 9 cut(s) | 797, 1178, 1367, 1658, 1664, 1738, 1947, 1977, 1984 |
| BsiEI | CGRYCG | 2 cut(s) | 1681, 1789 |
| BsiHKAI | GWGCWC | 2 cut(s) | 456, 1932 |
| BsiSI | CCGG | 2 cut(s) | 970, 1954 |
| BslFI | GGGAC | 6 cut(s) | 1312, 1474, 1874, 2016, 2153, 2315 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 72, 168, 1671, 1729, 1954, 2196 |
| BsmAI | GTCTC | 3 cut(s) | 858, 2145, 2295 |
| BsmBI | CGTCTC | 2 cut(s) | 2145, 2295 |
| BsmFI | GGGAC | 6 cut(s) | 1312, 1474, 1874, 2016, 2153, 2315 |
| BsnI | GGCC | 9 cut(s) | 797, 1178, 1367, 1658, 1664, 1738, 1947, 1977, 1984 |
| Bsp120I | GGGCCC | 1 cut(s) | 1662 |
| Bsp1286I | GDGCHC | 5 cut(s) | 456, 976, 1666, 1824, 1932 |
| Bsp143I | GATC | 5 cut(s) | 523, 579, 1356, 2212, 2378 |
| Bsp19I | CCATGG | 1 cut(s) | 1979 |
| BspACI | CCGC | 8 cut(s) | 1172, 1196, 1237, 1618, 1681, 1687, 1789, 1943 |
| BspANI | GGCC | 9 cut(s) | 797, 1178, 1367, 1658, 1664, 1738, 1947, 1977, 1984 |
| BspCNI | CTCAG | 7 cut(s) | 109, 280, 454, 501, 787, 1117, 1776 |
| BspFNI | CGCG | 1 cut(s) | 1683 |
| BspHI | TCATGA | 1 cut(s) | 880 |
| BspLI | GGNNCC | 3 cut(s) | 1664, 2047, 2214 |
| BspPI | GGATC | 2 cut(s) | 2207, 2220 |
| BspQI | GCTCTTC | 1 cut(s) | 2076 |
| BsrDI | GCAATG | 2 cut(s) | 1689, 2256 |
| BsrI | ACTGG | 4 cut(s) | 683, 769, 1368, 2369 |
| BssECI | CCNNGG | 5 cut(s) | 66, 912, 1659, 1698, 1979 |
| BssMI | GATC | 5 cut(s) | 523, 579, 1356, 2212, 2378 |
| BssNI | GRCGYC | 1 cut(s) | 2154 |
| BssT1I | CCWWGG | 3 cut(s) | 66, 912, 1979 |
| Bst2UI | CCWGG | 5 cut(s) | 338, 614, 1475, 1660, 1949 |
| Bst4CI | ACNGT | 4 cut(s) | 1453, 1488, 1757, 2108 |
| Bst6I | CTCTTC | 4 cut(s) | 9, 996, 1240, 2076 |
| BstACI | GRCGYC | 1 cut(s) | 2154 |
| BstBAI | YACGTR | 1 cut(s) | 2174 |
| BstC8I | GCNNGC | 6 cut(s) | 668, 933, 965, 1616, 1945, 1975 |
| BstDSI | CCRYGG | 1 cut(s) | 1979 |
| BstEII | GGTNACC | 1 cut(s) | 1757 |
| BstFNI | CGCG | 1 cut(s) | 1683 |
| BstH2I | RGCGCY | 1 cut(s) | 970 |
| BstHHI | GCGC | 1 cut(s) | 969 |
| BstKTI | GATC | 5 cut(s) | 526, 582, 1359, 2215, 2381 |
| BstMAI | GTCTC | 3 cut(s) | 858, 2145, 2295 |
| BstMBI | GATC | 5 cut(s) | 523, 579, 1356, 2212, 2378 |
| BstMCI | CGRYCG | 2 cut(s) | 1681, 1789 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 422, 947, 2120, 2278 |
| BstNI | CCWGG | 5 cut(s) | 338, 614, 1475, 1660, 1949 |
| BstNSI | RCATGY | 4 cut(s) | 670, 935, 1603, 2222 |
| BstPI | GGTNACC | 1 cut(s) | 1757 |
| BstSCI | CCNGG | 7 cut(s) | 336, 612, 969, 1473, 1658, 1947, 1953 |
| BstSFI | CTRYAG | 1 cut(s) | 1184 |
| BstSLI | GKGCMC | 1 cut(s) | 1666 |
| BstUI | CGCG | 1 cut(s) | 1683 |
| BstV1I | GCAGC | 9 cut(s) | 33, 639, 790, 1313, 1316, 1568, 1623, 1706, 2237 |
| BstX2I | RGATCY | 1 cut(s) | 2212 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 805, 1481 |
| BstYI | RGATCY | 1 cut(s) | 2212 |
| BsuRI | GGCC | 9 cut(s) | 797, 1178, 1367, 1658, 1664, 1738, 1947, 1977, 1984 |
| BtgI | CCRYGG | 1 cut(s) | 1979 |
| BtgZI | GCGATG | 2 cut(s) | 210, 1727 |
| BtsI | GCAGTG | 1 cut(s) | 1426 |
| BtsIMutI | CAGTG | 4 cut(s) | 676, 1368, 1426, 1816 |
| Cac8I | GCNNGC | 6 cut(s) | 668, 933, 965, 1616, 1945, 1975 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1457 |
| CciI | TCATGA | 1 cut(s) | 880 |
| CfoI | GCGC | 1 cut(s) | 969 |
| Cfr13I | GGNCC | 9 cut(s) | 1177, 1656, 1662, 1663, 1737, 1945, 1951, 1976, 2045 |
| CseI | GACGC | 2 cut(s) | 1672, 2162 |
| Csp6I | GTAC | 3 cut(s) | 768, 1342, 1597 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1792, 1827 |
| CviQI | GTAC | 3 cut(s) | 768, 1342, 1597 |
| DpnI | GATC | 5 cut(s) | 525, 581, 1358, 2214, 2380 |
| DpnII | GATC | 5 cut(s) | 523, 579, 1356, 2212, 2378 |
| DraI | TTTAAA | 1 cut(s) | 2061 |
| EaeI | YGGCCR | 2 cut(s) | 1365, 1982 |
| Eam1104I | CTCTTC | 4 cut(s) | 9, 996, 1240, 2076 |
| EarI | CTCTTC | 4 cut(s) | 9, 996, 1240, 2076 |
| Eco130I | CCWWGG | 3 cut(s) | 66, 912, 1979 |
| Eco24I | GRGCYC | 3 cut(s) | 976, 1666, 1824 |
| Eco32I | GATATC | 1 cut(s) | 1624 |
| Eco47I | GGWCC | 2 cut(s) | 1951, 2045 |
| Eco57I | CTGAAG | 2 cut(s) | 30, 917 |
| Eco72I | CACGTG | 1 cut(s) | 2174 |
| Eco91I | GGTNACC | 1 cut(s) | 1757 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1662, 1663 |
| EcoO65I | GGTNACC | 1 cut(s) | 1757 |
| EcoRII | CCWGG | 5 cut(s) | 336, 612, 1473, 1658, 1947 |
| EcoRV | GATATC | 1 cut(s) | 1624 |
| EcoT14I | CCWWGG | 3 cut(s) | 66, 912, 1979 |
| EcoT38I | GRGCYC | 3 cut(s) | 976, 1666, 1824 |
| ErhI | CCWWGG | 3 cut(s) | 66, 912, 1979 |
| Esp3I | CGTCTC | 2 cut(s) | 2145, 2295 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 569, 601 |
| FaqI | GGGAC | 6 cut(s) | 1312, 1474, 1874, 2016, 2153, 2315 |
| FauI | CCCGC | 2 cut(s) | 1611, 1936 |
| FauNDI | CATATG | 2 cut(s) | 1728, 2242 |
| FbaI | TGATCA | 1 cut(s) | 523 |
| FriOI | GRGCYC | 3 cut(s) | 976, 1666, 1824 |
| FspBI | CTAG | 3 cut(s) | 783, 2117, 2327 |
| GlaI | GCGC | 1 cut(s) | 968 |
| GsaI | CCCAGC | 2 cut(s) | 1183, 1576 |
| HaeII | RGCGCY | 1 cut(s) | 970 |
| HaeIII | GGCC | 9 cut(s) | 797, 1178, 1367, 1658, 1664, 1738, 1947, 1977, 1984 |
| HapII | CCGG | 2 cut(s) | 970, 1954 |
| HgaI | GACGC | 2 cut(s) | 1672, 2162 |
| HhaI | GCGC | 1 cut(s) | 969 |
| Hin1I | GRCGYC | 1 cut(s) | 2154 |
| Hin6I | GCGC | 1 cut(s) | 967 |
| HinP1I | GCGC | 1 cut(s) | 967 |
| HinfI | GANTC | 7 cut(s) | 464, 531, 656, 846, 851, 1885, 2323 |
| HpaII | CCGG | 2 cut(s) | 970, 1954 |
| HphI | GGTGA | 5 cut(s) | 1228, 1525, 1751, 2080, 2120 |
| Hpy166II | GTNNAC | 4 cut(s) | 75, 157, 1344, 1753 |
| Hpy188I | TCNGA | 7 cut(s) | 380, 510, 528, 1126, 1384, 2099, 2295 |
| Hpy188III | TCNNGA | 6 cut(s) | 141, 695, 881, 977, 1404, 2360 |
| Hpy8I | GTNNAC | 4 cut(s) | 75, 157, 1344, 1753 |
| Hpy99I | CGWCG | 2 cut(s) | 627, 1844 |
| HpyAV | CCTTC | 3 cut(s) | 1223, 2203, 2354 |
| HpyCH4III | ACNGT | 4 cut(s) | 1453, 1488, 1757, 2108 |
| HpyCH4IV | ACGT | 3 cut(s) | 1204, 2173, 2288 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 422, 947, 2120, 2278 |
| HpySE526I | ACGT | 3 cut(s) | 1204, 2173, 2288 |
| Hsp92I | GRCGYC | 1 cut(s) | 2154 |
| HspAI | GCGC | 1 cut(s) | 967 |
| Ksp22I | TGATCA | 1 cut(s) | 523 |
| Kzo9I | GATC | 5 cut(s) | 523, 579, 1356, 2212, 2378 |
| LguI | GCTCTTC | 1 cut(s) | 2076 |
| LmnI | GCTCC | 3 cut(s) | 180, 1146, 1574 |
| Lsp1109I | GCAGC | 9 cut(s) | 33, 639, 790, 1313, 1316, 1568, 1623, 1706, 2237 |
| LweI | GCATC | 1 cut(s) | 2101 |
| MaeI | CTAG | 3 cut(s) | 783, 2117, 2327 |
| MaeII | ACGT | 3 cut(s) | 1204, 2173, 2288 |
| MaeIII | GTNAC | 5 cut(s) | 124, 470, 1447, 1757, 2068 |
| MalI | GATC | 5 cut(s) | 525, 581, 1358, 2214, 2380 |
| MboI | GATC | 5 cut(s) | 523, 579, 1356, 2212, 2378 |
| MflI | RGATCY | 1 cut(s) | 2212 |
| MhlI | GDGCHC | 5 cut(s) | 456, 976, 1666, 1824, 1932 |
| MlsI | TGGCCA | 2 cut(s) | 1367, 1984 |
| MluNI | TGGCCA | 2 cut(s) | 1367, 1984 |
| MlyI | GAGTC | 4 cut(s) | 473, 650, 860, 1879 |
| MmeI | TCCRAC | 4 cut(s) | 812, 843, 1797, 1834 |
| Mox20I | TGGCCA | 2 cut(s) | 1367, 1984 |
| MroXI | GAANNNNTTC | 2 cut(s) | 321, 1500 |
| MscI | TGGCCA | 2 cut(s) | 1367, 1984 |
| MseI | TTAA | 8 cut(s) | 297, 813, 996, 1037, 1200, 1470, 2021, 2060 |
| MslI | CAYNNNNRTG | 1 cut(s) | 406 |
| Msp20I | TGGCCA | 2 cut(s) | 1367, 1984 |
| MspI | CCGG | 2 cut(s) | 970, 1954 |
| MspR9I | CCNGG | 7 cut(s) | 338, 614, 971, 1475, 1660, 1949, 1955 |
| MvaI | CCWGG | 5 cut(s) | 338, 614, 1475, 1660, 1949 |
| MvnI | CGCG | 1 cut(s) | 1683 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 422, 947, 2120, 2278 |
| NciI | CCSGG | 2 cut(s) | 971, 1955 |
| NcoI | CCATGG | 1 cut(s) | 1979 |
| NdeI | CATATG | 2 cut(s) | 1728, 2242 |
| NdeII | GATC | 5 cut(s) | 523, 579, 1356, 2212, 2378 |
| NlaIV | GGNNCC | 3 cut(s) | 1664, 2047, 2214 |
| NmeAIII | GCCGAG | 3 cut(s) | 1688, 1714, 1723 |
| NmuCI | GTSAC | 4 cut(s) | 470, 1447, 1757, 2068 |
| NspI | RCATGY | 4 cut(s) | 670, 935, 1603, 2222 |
| PaeI | GCATGC | 2 cut(s) | 670, 935 |
| PagI | TCATGA | 1 cut(s) | 880 |
| PciI | ACATGT | 1 cut(s) | 2218 |
| PciSI | GCTCTTC | 1 cut(s) | 2076 |
| PdmI | GAANNNNTTC | 2 cut(s) | 321, 1500 |
| PfeI | GAWTC | 3 cut(s) | 531, 846, 2323 |
| PflFI | GACNNNGTC | 1 cut(s) | 1682 |
| PfoI | TCCNGGA | 2 cut(s) | 336, 612 |
| PleI | GAGTC | 4 cut(s) | 472, 650, 859, 1879 |
| PmaCI | CACGTG | 1 cut(s) | 2174 |
| PmlI | CACGTG | 1 cut(s) | 2174 |
| PpsI | GAGTC | 4 cut(s) | 472, 650, 859, 1879 |
| Ppu21I | YACGTR | 1 cut(s) | 2174 |
| PscI | ACATGT | 1 cut(s) | 2218 |
| PshBI | ATTAAT | 1 cut(s) | 813 |
| PsiI | TTATAA | 1 cut(s) | 1428 |
| Psp6I | CCWGG | 5 cut(s) | 336, 612, 1473, 1658, 1947 |
| PspCI | CACGTG | 1 cut(s) | 2174 |
| PspEI | GGTNACC | 1 cut(s) | 1757 |
| PspFI | CCCAGC | 2 cut(s) | 1179, 1572 |
| PspGI | CCWGG | 5 cut(s) | 336, 612, 1473, 1658, 1947 |
| PspN4I | GGNNCC | 3 cut(s) | 1664, 2047, 2214 |
| PspOMI | GGGCCC | 1 cut(s) | 1662 |
| PspPI | GGNCC | 9 cut(s) | 1177, 1656, 1662, 1663, 1737, 1945, 1951, 1976, 2045 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1457 |
| PsuI | RGATCY | 1 cut(s) | 2212 |
| PsyI | GACNNNGTC | 1 cut(s) | 1682 |
| RsaI | GTAC | 3 cut(s) | 769, 1343, 1598 |
| RsaNI | GTAC | 3 cut(s) | 768, 1342, 1597 |
| RseI | CAYNNNNRTG | 1 cut(s) | 406 |
| SapI | GCTCTTC | 1 cut(s) | 2076 |
| SaqAI | TTAA | 8 cut(s) | 297, 813, 996, 1037, 1200, 1470, 2021, 2060 |
| Sau3AI | GATC | 5 cut(s) | 523, 579, 1356, 2212, 2378 |
| Sau96I | GGNCC | 9 cut(s) | 1177, 1656, 1662, 1663, 1737, 1945, 1951, 1976, 2045 |
| SchI | GAGTC | 4 cut(s) | 473, 650, 860, 1879 |
| ScrFI | CCNGG | 7 cut(s) | 338, 614, 971, 1475, 1660, 1949, 1955 |
| SduI | GDGCHC | 5 cut(s) | 456, 976, 1666, 1824, 1932 |
| SfaNI | GCATC | 1 cut(s) | 2101 |
| SfcI | CTRYAG | 1 cut(s) | 1184 |
| SinI | GGWCC | 2 cut(s) | 1951, 2045 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 406 |
| SmlI | CTYRAG | 2 cut(s) | 975, 2358 |
| SmoI | CTYRAG | 2 cut(s) | 975, 2358 |
| SphI | GCATGC | 2 cut(s) | 670, 935 |
| SsiI | CCGC | 8 cut(s) | 1172, 1196, 1237, 1618, 1681, 1687, 1789, 1943 |
| SspMI | CTAG | 3 cut(s) | 783, 2117, 2327 |
| StyD4I | CCNGG | 7 cut(s) | 336, 612, 969, 1473, 1658, 1947, 1953 |
| StyI | CCWWGG | 3 cut(s) | 66, 912, 1979 |
| TaaI | ACNGT | 4 cut(s) | 1453, 1488, 1757, 2108 |
| TaiI | ACGT | 3 cut(s) | 1207, 2176, 2291 |
| TaqI | TCGA | 4 cut(s) | 849, 924, 1015, 1785 |
| TatI | WGTACW | 2 cut(s) | 1341, 1596 |
| TauI | GCSGC | 1 cut(s) | 1240 |
| TfiI | GAWTC | 3 cut(s) | 531, 846, 2323 |
| Tru1I | TTAA | 8 cut(s) | 297, 813, 996, 1037, 1200, 1470, 2021, 2060 |
| Tru9I | TTAA | 8 cut(s) | 297, 813, 996, 1037, 1200, 1470, 2021, 2060 |
| TscAI | CASTG | 4 cut(s) | 683, 1375, 1426, 1816 |
| TseFI | GTSAC | 4 cut(s) | 470, 1447, 1757, 2068 |
| TseI | GCWGC | 9 cut(s) | 46, 627, 778, 1304, 1326, 1581, 1611, 1694, 2225 |
| Tsp45I | GTSAC | 4 cut(s) | 470, 1447, 1757, 2068 |
| TspGWI | ACGGA | 1 cut(s) | 1276 |
| TspRI | CASTG | 4 cut(s) | 683, 1375, 1426, 1816 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1682 |
| VpaK11BI | GGWCC | 2 cut(s) | 1951, 2045 |
| VspI | ATTAAT | 1 cut(s) | 813 |
| XapI | RAATTY | 4 cut(s) | 210, 590, 705, 730 |
| XceI | RCATGY | 4 cut(s) | 670, 935, 1603, 2222 |
| XmnI | GAANNNNTTC | 2 cut(s) | 321, 1500 |
| XspI | CTAG | 3 cut(s) | 783, 2117, 2327 |