Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001864

Physical Location & Seq

Genomic Coordinates Forward (+)

15391602 .. 15394927

Gene Structure 3326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0170700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGCCGCGAGGGAAGGTAAGCCGGCCTTTATTTGTATCTCTTCGTCAGAAGAAGAAGAAGACGACGACGGACCAGAGAGCGACGACTATGATTACGATGAGAATCACGAGGACGAGGACGACGATCAAATGGAGGAAGAGGTCGATGACGAGTCTCTCTCCAACAAAGTCATACGTTTCCTCGAAGAAGGGAGTGATTTAGATTCTTTGAATCTCAAAGAATGCAAAGCCTATTTGCGAAAGCACGGTCTTAGAATTTCAGGAACCAAATTGATTTGTATACAAAGAATTCAAGAGCACCAGAGATTAAAAGATGGAAATGGTGAAGCATTGTATCCCAGATCATCTTTTGTAATTAACTGTACAGGTGACGTCTGTAAGGAAGATGTCGTCCTCTTCACTCAGAAAGTTCATCAGAAGTTTGATAAGATGACAAGGCATGGAAGGGTTCTTGGGAAGAGAGTTGTTGCCGGTAGGGTTGTCAAAGAAAGCTATGGTGCGGCTAAACAACAGCATACTTTTACGGTTGAAGTGTTATGGAGTAGGGGAATAAAGGAGCTGTGTCCACTATTTCCTCTGCTTGTGAAGGGTCGCAATCTCTACAAAATGAAAACTTTTAGACAGCGTTGGAGTAATGAAGCTGAAAGATCCACAGTGCTAGCTGAGAAGCACAGACGAGGTGGAGCAGCAAGACTTGTGAGAGCGATGAAAAAATCAAAGAAATCGACTGCCAATGGAGGTACGAAGTGTCACAACCAATCCCAATTTTCTAAACCAAACAACAAGCGAAAGACTACAGAATCAGAAAGGGGGAAGCACGCGAGATCTGCAAGAGCAGCACCTTCAGAACAGATGAGTTTCCAACAAAATGCAAGGAGTAAAACCTCTCAACGTTCTAGTAAGCGCCATAAAGCAGTTCACCCTAATATAGATAGAGTTCCAACTCTCCAGTCACAGTCTAATCCTCGAATTTGTCATCCATCTCAAATAGAATCTCAACACAGGAATGCTCCTTTCCCATATGCTAGTCATCCCATAGGCTCCACTTCAACTGTGTTGAGATATCCTACAGCAACTGATGCTACTACCAGCTTCACTGACAGAAATTATAGCCACTATGGCTACATAGATCCTGTCTATAATCGGGAGTTGAACAACCGGAATCAATTATCAAGATCGGATGCTGGCAGGCCATTTCATCTCTATATGTCAGCAGCTGGGAACTATGGACATAGGGGGAGAGGGCAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009956 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010492 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060771 GO:0060772 GO:0060774 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

417

Amino Acids

47.52

Weight (kDa)

9.41

Isoelectric Point (pI)

62.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAP	PF02037	66 - 101	8e-07	SAP domain
DUF7699	PF24766	126 - 210	5.1e-39	Domain of unknown function (DUF7699)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G65510 AT5G65510 AT5G65510 AT5G65510
fragaria_vesca	FvH4_1g19530
malus_domestica	MD01G1040700.v1.1 MD15G1310900.v1.1
prunus_persica	Prupe.6G142500_v2.0.a1 Prupe.6G203000_v2.0.a1
pyrus_communis	pycom01g06820 pycom15g27450
rosa_chinensis	RchiOBHm_Chr2g0111031 RchiOBHm_Chr4g0405741
rosa_laevigata	RLG00000012851 RLG00000017859 RLG00000020876
rosa_multiflora	Rmu_co8195526.1_g000001 Rmu_sc0000041.1_g000014 Rmu_sc0003994.1_g000004
rosa_roxburghii	Rroxscaffold_2G00132730 Rroxscaffold_5G00366230
rosa_rugosa	Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700
rosa_samantha	Rh2AG222800 Rh2AG222900 Rh2BG234800 Rh2CG226300 Rh2DG230600 Rh2DG230700 Rh2DG399700 Rh4BG037900 Rh4CG141400 Rh6BG125200 Rh6CG051000 Rh7CG223000
rosa_wichuraiana	Rw2G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	375
AccI	GTMKAC	1 cut(s)	280
AccII	CGCG	2 cut(s)	8, 821
AciI	CCGC	2 cut(s)	6, 500
AclI	AACGTT	1 cut(s)	892
AclWI	GGATC	2 cut(s)	642, 1124
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	255, 288, 969
AcuI	CTGAAG	1 cut(s)	828
AcyI	GRCGYC	1 cut(s)	372
AfaI	GTAC	2 cut(s)	364, 742
AgsI	TTSAA	5 cut(s)	211, 293, 530, 1050, 1153
AluBI	AGCT	6 cut(s)	492, 559, 641, 662, 1092, 1217
AluI	AGCT	6 cut(s)	492, 559, 641, 662, 1092, 1217
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	2 cut(s)	642, 1124
AlwNI	CAGNNNCTG	2 cut(s)	1076, 1217
AoxI	GGCC	3 cut(s)	3, 24, 1190
ApeKI	GCWGC	3 cut(s)	686, 836, 1214
ApoI	RAATTY	3 cut(s)	255, 288, 969
ArsI	GACNNNNNNTTYG	2 cut(s)	232, 264
AspLEI	GCGC	1 cut(s)	906
AspS9I	GGNCC	1 cut(s)	71
AsuHPI	GGTGA	3 cut(s)	335, 380, 911
AsuNHI	GCTAGC	1 cut(s)	658
AvaII	GGWCC	1 cut(s)	71
BauI	CACGAG	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	3 cut(s)	698, 848, 1226
BccI	CCATC	2 cut(s)	308, 988
BciVI	GTATCC	1 cut(s)	345
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	3 cut(s)	659, 897, 1026
BfmI	CTRYAG	2 cut(s)	795, 1068
BfoI	RGCGCY	1 cut(s)	907
BfuI	GTATCC	1 cut(s)	345
BglI	GCCNNNNNGGC	1 cut(s)	1119
BglII	AGATCT	1 cut(s)	824
BisI	GCNGC	5 cut(s)	6, 501, 687, 837, 1215
BlsI	GCNGC	5 cut(s)	7, 502, 688, 838, 1216
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	2 cut(s)	265, 1042
BmsI	GCATC	2 cut(s)	1069, 1171
BmtI	GCTAGC	1 cut(s)	662
BpiI	GAAGAC	1 cut(s)	66
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
BpmI	CTGGAG	1 cut(s)	932
BsaBI	GATNNNNATC	1 cut(s)	102
BsaHI	GRCGYC	1 cut(s)	372
BsaWI	WCCGGW	1 cut(s)	1158
Bse118I	RCCGGY	2 cut(s)	22, 470
Bse1I	ACTGG	1 cut(s)	949
Bse8I	GATNNNNATC	1 cut(s)	102
BseGI	GGATG	3 cut(s)	976, 1030, 1186
BseJI	GATNNNNATC	1 cut(s)	102
BseMII	CTCAG	2 cut(s)	416, 654
BseNI	ACTGG	1 cut(s)	949
BseXI	GCAGC	3 cut(s)	698, 848, 1226
BseYI	CCCAGC	1 cut(s)	1217
Bsh1236I	CGCG	2 cut(s)	8, 821
BshFI	GGCC	3 cut(s)	5, 26, 1192
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	3 cut(s)	23, 471, 1159
BsmAI	GTCTC	1 cut(s)	159
BsmI	GAATGC	2 cut(s)	227, 1012
BsnI	GGCC	3 cut(s)	5, 26, 1192
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp1407I	TGTACA	1 cut(s)	362
Bsp143I	GATC	6 cut(s)	124, 341, 647, 824, 1129, 1175
BspACI	CCGC	2 cut(s)	6, 500
BspANI	GGCC	3 cut(s)	5, 26, 1192
BspCNI	CTCAG	2 cut(s)	415, 655
BspFNI	CGCG	2 cut(s)	8, 821
BspLI	GGNNCC	2 cut(s)	265, 1042
BspOI	GCTAGC	1 cut(s)	662
BspPI	GGATC	2 cut(s)	642, 1124
BsrFI	RCCGGY	2 cut(s)	22, 470
BsrGI	TGTACA	1 cut(s)	362
BsrI	ACTGG	1 cut(s)	949
BssAI	RCCGGY	2 cut(s)	22, 470
BssMI	GATC	6 cut(s)	124, 341, 647, 824, 1129, 1175
BssNAI	GTATAC	1 cut(s)	281
BssNI	GRCGYC	1 cut(s)	372
BssSI	CACGAG	1 cut(s)	107
Bst1107I	GTATAC	1 cut(s)	281
Bst2BI	CACGAG	1 cut(s)	107
Bst4CI	ACNGT	6 cut(s)	248, 362, 526, 655, 957, 1054
Bst6I	CTCTTC	4 cut(s)	46, 132, 401, 452
BstACI	GRCGYC	1 cut(s)	372
BstAPI	GCANNNNNTGC	1 cut(s)	1079
BstAUI	TGTACA	1 cut(s)	362
BstC8I	GCNNGC	5 cut(s)	24, 660, 819, 1186, 1190
BstDEI	CTNAG	3 cut(s)	251, 402, 663
BstF5I	GGATG	3 cut(s)	976, 1030, 1186
BstFNI	CGCG	2 cut(s)	8, 821
BstH2I	RGCGCY	1 cut(s)	907
BstHHI	GCGC	1 cut(s)	906
BstKTI	GATC	6 cut(s)	127, 344, 650, 827, 1132, 1178
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	6 cut(s)	124, 341, 647, 824, 1129, 1175
BstMWI	GCNNNNNNNGC	4 cut(s)	827, 836, 1079, 1119
BstSFI	CTRYAG	2 cut(s)	795, 1068
BstUI	CGCG	2 cut(s)	8, 821
BstV1I	GCAGC	3 cut(s)	698, 848, 1226
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	3 cut(s)	647, 824, 1129
BstYI	RGATCY	3 cut(s)	647, 824, 1129
BstZ17I	GTATAC	1 cut(s)	281
BsuI	GTATCC	1 cut(s)	345
BsuRI	GGCC	3 cut(s)	5, 26, 1192
BtgZI	GCGATG	1 cut(s)	719
BtsCI	GGATG	3 cut(s)	976, 1030, 1186
BtsIMutI	CAGTG	2 cut(s)	660, 1095
Cac8I	GCNNGC	5 cut(s)	24, 660, 819, 1186, 1190
CaiI	CAGNNNCTG	2 cut(s)	1076, 1217
CfoI	GCGC	1 cut(s)	906
Cfr10I	RCCGGY	2 cut(s)	22, 470
Cfr13I	GGNCC	1 cut(s)	71
Csp6I	GTAC	2 cut(s)	363, 741
CviAII	CATG	1 cut(s)	440
CviQI	GTAC	2 cut(s)	363, 741
DdeI	CTNAG	3 cut(s)	251, 402, 663
DpnI	GATC	6 cut(s)	126, 343, 649, 826, 1131, 1177
DpnII	GATC	6 cut(s)	124, 341, 647, 824, 1129, 1175
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	46, 132, 401, 452
EarI	CTCTTC	4 cut(s)	46, 132, 401, 452
Eco32I	GATATC	1 cut(s)	1064
Eco47I	GGWCC	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	828
EcoRI	GAATTC	1 cut(s)	288
EcoRV	GATATC	1 cut(s)	1064
FaeI	CATG	1 cut(s)	443
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FatI	CATG	1 cut(s)	439
FauNDI	CATATG	1 cut(s)	1021
FblI	GTMKAC	1 cut(s)	280
Fnu4HI	GCNGC	5 cut(s)	6, 501, 687, 837, 1215
FokI	GGATG	3 cut(s)	963, 1017, 1193
Fsp4HI	GCNGC	5 cut(s)	6, 501, 687, 837, 1215
FspBI	CTAG	3 cut(s)	659, 897, 1026
GlaI	GCGC	1 cut(s)	905
GluI	GCNGC	5 cut(s)	6, 501, 687, 837, 1215
GsaI	CCCAGC	1 cut(s)	1221
GsuI	CTGGAG	1 cut(s)	932
HaeII	RGCGCY	1 cut(s)	907
HaeIII	GGCC	3 cut(s)	5, 26, 1192
HapII	CCGG	3 cut(s)	23, 471, 1159
HhaI	GCGC	1 cut(s)	906
Hin1I	GRCGYC	1 cut(s)	372
Hin1II	CATG	1 cut(s)	443
Hin6I	GCGC	1 cut(s)	904
HinP1I	GCGC	1 cut(s)	904
HinfI	GANTC	7 cut(s)	103, 152, 203, 211, 800, 992, 1162
HpaII	CCGG	3 cut(s)	23, 471, 1159
HphI	GGTGA	3 cut(s)	335, 380, 911
Hpy166II	GTNNAC	3 cut(s)	281, 566, 919
Hpy188I	TCNGA	6 cut(s)	49, 405, 417, 805, 847, 1180
Hpy188III	TCNNGA	5 cut(s)	107, 261, 293, 1145, 1173
Hpy8I	GTNNAC	3 cut(s)	281, 566, 919
Hpy99I	CGWCG	4 cut(s)	68, 71, 86, 125
HpyAV	CCTTC	5 cut(s)	8, 182, 438, 580, 852
HpyCH4III	ACNGT	6 cut(s)	248, 362, 526, 655, 957, 1054
HpyCH4IV	ACGT	3 cut(s)	175, 372, 892
HpyCH4V	TGCA	3 cut(s)	225, 830, 872
HpyF10VI	GCNNNNNNNGC	4 cut(s)	827, 836, 1079, 1119
HpyF3I	CTNAG	3 cut(s)	251, 402, 663
HpySE526I	ACGT	3 cut(s)	175, 372, 892
Hsp92I	GRCGYC	1 cut(s)	372
Hsp92II	CATG	1 cut(s)	443
HspAI	GCGC	1 cut(s)	904
KroI	GCCGGC	1 cut(s)	22
KroNI	GCCGGC	1 cut(s)	24
Kzo9I	GATC	6 cut(s)	124, 341, 647, 824, 1129, 1175
LmnI	GCTCC	4 cut(s)	556, 683, 1015, 1046
Lsp1109I	GCAGC	3 cut(s)	698, 848, 1226
LweI	GCATC	2 cut(s)	1069, 1171
MaeI	CTAG	3 cut(s)	659, 897, 1026
MaeII	ACGT	3 cut(s)	175, 372, 892
MaeIII	GTNAC	3 cut(s)	368, 749, 951
MalI	GATC	6 cut(s)	126, 343, 649, 826, 1131, 1177
MboI	GATC	6 cut(s)	124, 341, 647, 824, 1129, 1175
MflI	RGATCY	3 cut(s)	647, 824, 1129
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	8 cut(s)	255, 269, 288, 354, 764, 969, 1105, 1166
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	4 cut(s)	186, 608, 886, 965
MroNI	GCCGGC	1 cut(s)	22
MseI	TTAA	2 cut(s)	308, 357
MslI	CAYNNNNRTG	1 cut(s)	1005
MspA1I	CMGCKG	1 cut(s)	1217
MspI	CCGG	3 cut(s)	23, 471, 1159
Mva1269I	GAATGC	2 cut(s)	227, 1012
MvnI	CGCG	2 cut(s)	8, 821
MwoI	GCNNNNNNNGC	4 cut(s)	827, 836, 1079, 1119
NaeI	GCCGGC	1 cut(s)	24
NdeI	CATATG	1 cut(s)	1021
NdeII	GATC	6 cut(s)	124, 341, 647, 824, 1129, 1175
NgoMIV	GCCGGC	1 cut(s)	22
NheI	GCTAGC	1 cut(s)	658
NlaIII	CATG	1 cut(s)	443
NlaIV	GGNNCC	2 cut(s)	265, 1042
NmuCI	GTSAC	3 cut(s)	368, 749, 951
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PctI	GAATGC	2 cut(s)	227, 1012
PdiI	GCCGGC	1 cut(s)	24
PfeI	GAWTC	6 cut(s)	103, 203, 211, 800, 992, 1162
PkrI	GCNGC	5 cut(s)	7, 502, 688, 838, 1216
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
Psp1406I	AACGTT	1 cut(s)	892
PspFI	CCCAGC	1 cut(s)	1217
PspN4I	GGNNCC	2 cut(s)	265, 1042
PspPI	GGNCC	1 cut(s)	71
PstNI	CAGNNNCTG	2 cut(s)	1076, 1217
PsuI	RGATCY	3 cut(s)	647, 824, 1129
PvuII	CAGCTG	1 cut(s)	1217
RsaI	GTAC	2 cut(s)	364, 742
RsaNI	GTAC	2 cut(s)	363, 741
RseI	CAYNNNNRTG	1 cut(s)	1005
SaqAI	TTAA	2 cut(s)	308, 357
SatI	GCNGC	5 cut(s)	6, 501, 687, 837, 1215
Sau3AI	GATC	6 cut(s)	124, 341, 647, 824, 1129, 1175
Sau96I	GGNCC	1 cut(s)	71
SchI	GAGTC	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	300
SfaNI	GCATC	2 cut(s)	1069, 1171
SfcI	CTRYAG	2 cut(s)	795, 1068
SinI	GGWCC	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	1005
Sse9I	AATT	8 cut(s)	255, 269, 288, 354, 764, 969, 1105, 1166
SsiI	CCGC	2 cut(s)	6, 500
SspMI	CTAG	3 cut(s)	659, 897, 1026
TaaI	ACNGT	6 cut(s)	248, 362, 526, 655, 957, 1054
TaiI	ACGT	3 cut(s)	178, 375, 895
TaqI	TCGA	4 cut(s)	144, 183, 725, 967
TasI	AATT	8 cut(s)	255, 269, 288, 354, 764, 969, 1105, 1166
TatI	WGTACW	1 cut(s)	362
TauI	GCSGC	2 cut(s)	8, 503
TfiI	GAWTC	6 cut(s)	103, 203, 211, 800, 992, 1162
Tru1I	TTAA	2 cut(s)	308, 357
Tru9I	TTAA	2 cut(s)	308, 357
TscAI	CASTG	2 cut(s)	660, 1102
TseFI	GTSAC	3 cut(s)	368, 749, 951
TseI	GCWGC	3 cut(s)	686, 836, 1214
Tsp45I	GTSAC	3 cut(s)	368, 749, 951
TspDTI	ATGAA	5 cut(s)	401, 623, 651, 722, 1187
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	2 cut(s)	660, 1102
VpaK11BI	GGWCC	1 cut(s)	71
XapI	RAATTY	3 cut(s)	255, 288, 969
XmiI	GTMKAC	1 cut(s)	280
XspI	CTAG	3 cut(s)	659, 897, 1026
ZraI	GACGTC	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.