AT5G65510

Transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
26185593 .. 26189571
3979 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G65510.2

Sequence Viewer

Length: 1497 bp
ATGGCTCCTCCAATGACGAATTGCTTAACGTTTTCTCTGTCACCAATGGAGATGTTGAAATCAACTGATCAGTCTCACTTCTCTTCTTCTTACGACGATTCTTCTACTCCTTATCTCATCGATAACTTCTATGCTTTCAAAGAAGAAGCTGAGATAGAAGCTGCTGCTGCTTCAATGGCGGATTCAACAACCTTATCTACTTTTTTCGATCATTCTCAGACTCAGATTCCAAAGCTGGAAGATTTCCTCGGTGATTCCTTTGTCCGTTACTCTGATAACCAAACAGAGACCCAAGACTCTTCTTCTCTCACTCCATTCTACGATCCACGTCACCGCACCGTTGCCGAAGGAGTTACAGGGTTCTTCTCTGATCATCATCAGCCAGATTTCAAGACGATAAACTCGGGACCAGAAATCTTCGATGACTCAACAACTTCCAACATCGGTGGTACTCATCTCTCCAGTCACGTGGTGGAGTCATCAACGACGGCGAAGTTAGGGTTTAACGGTGATTGCACCACCACCGGAGGAGTTTTGTCTCTAGGGGTTAACAACACATCAGATCAACCTTTGAGCTGTAACAATGGCGAGAGAGGTGGAAACAGTAACAAGAAGAAAACAGTTTCTAAGAAGGAAACATCAGATGATTCAAAGAAGAAGATTGTCGAAACATTGGGACAAAGAACTTCAATTTATCGTGGAGTCACCCGACATAGATGGACTGGAAGATACGAAGCGCATCTATGGGATAACAGCTGTAGGAGGGAAGGTCAAGCCAGAAAAGGACGTCAAGTGTACTTAGGTGGATATGACAAGGAAGATAGAGCAGCTAGAGCCTATGACTTGGCAGCTTTAAAATACTGGGGTTCTACTGCTACTACAAATTTTCCGGTCTCGAGTTATTCAAAAGAACTTGAGGAAATGAATCACATGACCAAGCAAGAGTTTATTGCATCTCTTAGGAGGAAAAGTAGCGGTTTTTCGAGAGGAGCTTCAATATATAGAGGTGTCACAAGGCATCATCAACAAGGTCGCTGGCAAGCAAGAATCGGCCGTGTCGCAGGAAACAAAGATCTTTACCTCGGAACCTTTGCAACCGAAGAGGAAGCAGCAGAGGCTTATGACATTGCAGCCATAAAGTTCAGAGGAATCAACGCAGTAACTAACTTTGAGATGAACAGGTATGACATTGAAGCTGTCATGAATAGTTCTTTACCTGTAGGAGGAGCAGCTGCGAAACGCCACAAACTCAAACTCGCTCTTGAATCTCCTTCTTCATCATCCTCTGACCATAACCTCCAACAACAACAGTTGCTTCCGTCCTCTTCTCCCTCGGATCAAAACCCTAACTCAATCCCATGTGGCATTCCATTTGAGCCTTCAGTTCTCTATTACCACCAGAACTTCTTTCAGCATTATCCTTTGGTCTCTGACTCTACAATTCAAGCTCCTATGAACCAAGCTGAGTTTTTCTTGTGGCCTAACCAGTCTTACTAA

Protein Analysis

498

Amino Acids

55.45

Weight (kDa)

6.07

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 232 - 289 5.3e-10 AP2 domain
AP2 PF00847 334 - 383 1.6e-09 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 790
AciI CCGC 3 cut(s) 179, 334, 975
AclI AACGTT 1 cut(s) 29
AclWI GGATC 2 cut(s) 317, 1344
AcoI YGGCCR 1 cut(s) 1051
AcsI RAATTY 1 cut(s) 883
AcuI CTGAAG 1 cut(s) 1365
AcvI CACGTG 1 cut(s) 469
AcyI GRCGYC 1 cut(s) 787
AdeI CACNNNGTG 1 cut(s) 472
AfaI GTAC 2 cut(s) 451, 797
AfiI CCNNNNNNNGG 1 cut(s) 1223
AjiI CACGTC 1 cut(s) 329
Alw26I GTCTC 5 cut(s) 78, 281, 543, 898, 1432
AlwI GGATC 2 cut(s) 317, 1344
Ama87I CYCGRG 2 cut(s) 403, 895
AoxI GGCC 2 cut(s) 1051, 1478
ApeKI GCWGC 9 cut(s) 161, 164, 167, 827, 848, 1109, 1130, 1229, 1232
ApoI RAATTY 1 cut(s) 883
AspLEI GCGC 1 cut(s) 739
AspS9I GGNCC 1 cut(s) 407
AsuHPI GGTGA 5 cut(s) 33, 263, 323, 521, 697
AvaI CYCGRG 2 cut(s) 403, 895
AvaII GGWCC 1 cut(s) 407
BbrPI CACGTG 1 cut(s) 469
BbvI GCAGC 9 cut(s) 148, 151, 154, 839, 860, 1121, 1142, 1219, 1241
BccI CCATC 1 cut(s) 711
BceAI ACGGC 2 cut(s) 504, 1038
BclI TGATCA 2 cut(s) 67, 370
BcoDI GTCTC 5 cut(s) 78, 281, 543, 898, 1432
BfaI CTAG 2 cut(s) 542, 831
BfmI CTRYAG 2 cut(s) 757, 1218
BglII AGATCT 1 cut(s) 1072
BisI GCNGC 9 cut(s) 162, 165, 168, 828, 849, 1110, 1131, 1230, 1233
BlsI GCNGC 9 cut(s) 163, 166, 169, 829, 850, 1111, 1132, 1231, 1234
Bme18I GGWCC 1 cut(s) 407
BmeT110I CYCGRG 2 cut(s) 403, 895
BmgBI CACGTC 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 407
BmiI GGNNCC 3 cut(s) 6, 408, 1087
BmrI ACTGGG 1 cut(s) 871
BmsI GCATC 3 cut(s) 748, 962, 1027
BmuI ACTGGG 1 cut(s) 871
BpmI CTGGAG 1 cut(s) 445
BpuEI CTTGAG 1 cut(s) 935
Bsa29I ATCGAT 1 cut(s) 120
BsaAI YACGTR 1 cut(s) 469
BsaBI GATNNNNATC 1 cut(s) 375
BsaHI GRCGYC 1 cut(s) 787
BsaI GGTCTC 3 cut(s) 281, 898, 1432
BsaJI CCNNGG 3 cut(s) 247, 1081, 1332
BsaWI WCCGGW 2 cut(s) 524, 889
BsaXI ACNNNNNCTCC 4 cut(s) 754, 784, 955, 985
Bsc4I CCNNNNNNNGG 1 cut(s) 1223
Bse1I ACTGG 4 cut(s) 462, 727, 866, 1486
Bse3DI GCAATG 1 cut(s) 1125
Bse8I GATNNNNATC 1 cut(s) 375
BseCI ATCGAT 1 cut(s) 120
BseDI CCNNGG 3 cut(s) 247, 1081, 1332
BseGI GGATG 1 cut(s) 1280
BseJI GATNNNNATC 1 cut(s) 375
BseLI CCNNNNNNNGG 1 cut(s) 1223
BseMI GCAATG 1 cut(s) 1125
BseMII CTCAG 4 cut(s) 141, 230, 236, 1455
BseNI ACTGG 4 cut(s) 462, 727, 866, 1486
BseRI GAGGAG 3 cut(s) 543, 1002, 1239
BseX3I CGGCCG 1 cut(s) 1051
BseXI GCAGC 9 cut(s) 148, 151, 154, 839, 860, 1121, 1142, 1219, 1241
Bsh1285I CGRYCG 1 cut(s) 1054
BshFI GGCC 2 cut(s) 1053, 1480
BshVI ATCGAT 1 cut(s) 120
BsiEI CGRYCG 1 cut(s) 1054
BsiHKCI CYCGRG 2 cut(s) 403, 895
BsiSI CCGG 2 cut(s) 525, 890
BslFI GGGAC 2 cut(s) 420, 690
BslI CCNNNNNNNGG 1 cut(s) 1223
BsmAI GTCTC 5 cut(s) 78, 281, 543, 898, 1432
BsmFI GGGAC 2 cut(s) 420, 690
BsmI GAATGC 1 cut(s) 1365
BsnI GGCC 2 cut(s) 1053, 1480
Bso31I GGTCTC 3 cut(s) 281, 898, 1432
BsoBI CYCGRG 2 cut(s) 403, 895
Bsp143I GATC 7 cut(s) 67, 208, 322, 370, 562, 1072, 1336
BspACI CCGC 3 cut(s) 179, 334, 975
BspANI GGCC 2 cut(s) 1053, 1480
BspCNI CTCAG 4 cut(s) 142, 229, 235, 1456
BspDI ATCGAT 1 cut(s) 120
BspHI TCATGA 1 cut(s) 1200
BspLI GGNNCC 3 cut(s) 6, 408, 1087
BspPI GGATC 2 cut(s) 317, 1344
BspTNI GGTCTC 3 cut(s) 281, 898, 1432
BsrDI GCAATG 1 cut(s) 1125
BsrI ACTGG 4 cut(s) 462, 727, 866, 1486
BssECI CCNNGG 3 cut(s) 247, 1081, 1332
BssMI GATC 7 cut(s) 67, 208, 322, 370, 562, 1072, 1336
BssNI GRCGYC 1 cut(s) 787
Bst4CI ACNGT 5 cut(s) 340, 509, 605, 622, 1311
Bst6I CTCTTC 4 cut(s) 88, 304, 1095, 1330
BstACI GRCGYC 1 cut(s) 787
BstBAI YACGTR 1 cut(s) 469
BstC8I GCNNGC 2 cut(s) 1037, 1041
BstDEI CTNAG 7 cut(s) 150, 216, 222, 627, 799, 959, 1464
BstENI CCTNNNNNAGG 1 cut(s) 1221
BstF5I GGATG 1 cut(s) 1280
BstHHI GCGC 1 cut(s) 739
BstKTI GATC 7 cut(s) 70, 211, 325, 373, 565, 1075, 1339
BstMAI GTCTC 5 cut(s) 78, 281, 543, 898, 1432
BstMBI GATC 7 cut(s) 67, 208, 322, 370, 562, 1072, 1336
BstMCI CGRYCG 1 cut(s) 1054
BstMWI GCNNNNNNNGC 4 cut(s) 167, 176, 833, 1115
BstSFI CTRYAG 2 cut(s) 757, 1218
BstV1I GCAGC 9 cut(s) 148, 151, 154, 839, 860, 1121, 1142, 1219, 1241
BstX2I RGATCY 1 cut(s) 1072
BstXI CCANNNNNNTGG 1 cut(s) 469
BstYI RGATCY 1 cut(s) 1072
BstZI CGGCCG 1 cut(s) 1051
Bsu15I ATCGAT 1 cut(s) 120
BsuRI GGCC 2 cut(s) 1053, 1480
BsuTUI ATCGAT 1 cut(s) 120
BtrI CACGTC 1 cut(s) 329
BtsCI GGATG 1 cut(s) 1280
Cac8I GCNNGC 2 cut(s) 1037, 1041
CciI TCATGA 1 cut(s) 1200
CfoI GCGC 1 cut(s) 739
Cfr13I GGNCC 1 cut(s) 407
ClaI ATCGAT 1 cut(s) 120
Csp6I GTAC 2 cut(s) 450, 796
CspCI CAANNNNNGTGG 2 cut(s) 427, 462
CviAII CATG 3 cut(s) 931, 1201, 1359
CviQI GTAC 2 cut(s) 450, 796
DdeI CTNAG 7 cut(s) 150, 216, 222, 627, 799, 959, 1464
DpnI GATC 7 cut(s) 69, 210, 324, 372, 564, 1074, 1338
DpnII GATC 7 cut(s) 67, 208, 322, 370, 562, 1072, 1336
DraI TTTAAA 1 cut(s) 855
DraIII CACNNNGTG 1 cut(s) 472
EaeI YGGCCR 1 cut(s) 1051
EagI CGGCCG 1 cut(s) 1051
Eam1104I CTCTTC 4 cut(s) 88, 304, 1095, 1330
EarI CTCTTC 4 cut(s) 88, 304, 1095, 1330
EciI GGCGGA 1 cut(s) 194
EclXI CGGCCG 1 cut(s) 1051
Eco31I GGTCTC 3 cut(s) 281, 898, 1432
Eco47I GGWCC 1 cut(s) 407
Eco52I CGGCCG 1 cut(s) 1051
Eco57I CTGAAG 1 cut(s) 1365
Eco72I CACGTG 1 cut(s) 469
Eco88I CYCGRG 2 cut(s) 403, 895
EcoNI CCTNNNNNAGG 1 cut(s) 1221
FaeI CATG 3 cut(s) 934, 1204, 1362
FaqI GGGAC 2 cut(s) 420, 690
FatI CATG 3 cut(s) 930, 1200, 1358
FbaI TGATCA 2 cut(s) 67, 370
Fnu4HI GCNGC 9 cut(s) 162, 165, 168, 828, 849, 1110, 1131, 1230, 1233
FokI GGATG 1 cut(s) 1267
Fsp4HI GCNGC 9 cut(s) 162, 165, 168, 828, 849, 1110, 1131, 1230, 1233
FspBI CTAG 2 cut(s) 542, 831
GlaI GCGC 1 cut(s) 738
GluI GCNGC 9 cut(s) 162, 165, 168, 828, 849, 1110, 1131, 1230, 1233
GsuI CTGGAG 1 cut(s) 445
HaeIII GGCC 2 cut(s) 1053, 1480
HapII CCGG 2 cut(s) 525, 890
HhaI GCGC 1 cut(s) 739
Hin1I GRCGYC 1 cut(s) 787
Hin1II CATG 3 cut(s) 934, 1204, 1362
Hin6I GCGC 1 cut(s) 737
HinP1I GCGC 1 cut(s) 737
HincII GTYRAC 1 cut(s) 550
HindII GTYRAC 1 cut(s) 550
HpaI GTTAAC 1 cut(s) 550
HpaII CCGG 2 cut(s) 525, 890
HphI GGTGA 5 cut(s) 33, 263, 323, 521, 697
Hpy166II GTNNAC 2 cut(s) 550, 796
Hpy188III TCNNGA 6 cut(s) 391, 405, 895, 984, 1201, 1262
Hpy8I GTNNAC 2 cut(s) 550, 796
Hpy99I CGWCG 2 cut(s) 98, 490
HpyAV CCTTC 5 cut(s) 341, 625, 761, 1281, 1389
HpyCH4III ACNGT 5 cut(s) 340, 509, 605, 622, 1311
HpyCH4IV ACGT 4 cut(s) 29, 328, 468, 787
HpyCH4V TGCA 4 cut(s) 516, 953, 1094, 1130
HpyF10VI GCNNNNNNNGC 4 cut(s) 167, 176, 833, 1115
HpyF3I CTNAG 7 cut(s) 150, 216, 222, 627, 799, 959, 1464
HpySE526I ACGT 4 cut(s) 29, 328, 468, 787
Hsp92I GRCGYC 1 cut(s) 787
Hsp92II CATG 3 cut(s) 934, 1204, 1362
HspAI GCGC 1 cut(s) 737
Ksp22I TGATCA 2 cut(s) 67, 370
KspAI GTTAAC 1 cut(s) 550
Kzo9I GATC 7 cut(s) 67, 208, 322, 370, 562, 1072, 1336
LmnI GCTCC 4 cut(s) 10, 989, 1226, 1453
Lsp1109I GCAGC 9 cut(s) 148, 151, 154, 839, 860, 1121, 1142, 1219, 1241
LweI GCATC 3 cut(s) 748, 962, 1027
MaeI CTAG 2 cut(s) 542, 831
MaeII ACGT 4 cut(s) 29, 328, 468, 787
MalI GATC 7 cut(s) 69, 210, 324, 372, 564, 1074, 1338
MboI GATC 7 cut(s) 67, 208, 322, 370, 562, 1072, 1336
MflI RGATCY 1 cut(s) 1072
MluCI AATT 4 cut(s) 19, 690, 883, 1440
MlyI GAGTC 6 cut(s) 214, 290, 419, 485, 711, 1427
MmeI TCCRAC 2 cut(s) 462, 1324
MseI TTAA 4 cut(s) 26, 504, 549, 854
MspA1I CMGCKG 2 cut(s) 756, 1232
MspI CCGG 2 cut(s) 525, 890
Mva1269I GAATGC 1 cut(s) 1365
MwoI GCNNNNNNNGC 4 cut(s) 167, 176, 833, 1115
NdeII GATC 7 cut(s) 67, 208, 322, 370, 562, 1072, 1336
NlaIII CATG 3 cut(s) 934, 1204, 1362
NlaIV GGNNCC 3 cut(s) 6, 408, 1087
NmuCI GTSAC 5 cut(s) 39, 329, 464, 703, 1009
PaeR7I CTCGAG 1 cut(s) 895
PagI TCATGA 1 cut(s) 1200
PctI GAATGC 1 cut(s) 1365
PfeI GAWTC 9 cut(s) 98, 182, 226, 254, 647, 925, 1047, 1149, 1265
PkrI GCNGC 9 cut(s) 163, 166, 169, 829, 850, 1111, 1132, 1231, 1234
PleI GAGTC 6 cut(s) 214, 290, 419, 484, 710, 1427
PmaCI CACGTG 1 cut(s) 469
PmlI CACGTG 1 cut(s) 469
PpsI GAGTC 6 cut(s) 214, 290, 419, 484, 710, 1427
Ppu21I YACGTR 1 cut(s) 469
Psp1406I AACGTT 1 cut(s) 29
PspCI CACGTG 1 cut(s) 469
PspN4I GGNNCC 3 cut(s) 6, 408, 1087
PspPI GGNCC 1 cut(s) 407
PsuI RGATCY 1 cut(s) 1072
PvuII CAGCTG 2 cut(s) 756, 1232
RsaI GTAC 2 cut(s) 451, 797
RsaNI GTAC 2 cut(s) 450, 796
SaqAI TTAA 4 cut(s) 26, 504, 549, 854
SatI GCNGC 9 cut(s) 162, 165, 168, 828, 849, 1110, 1131, 1230, 1233
Sau3AI GATC 7 cut(s) 67, 208, 322, 370, 562, 1072, 1336
Sau96I GGNCC 1 cut(s) 407
SchI GAGTC 6 cut(s) 214, 290, 419, 485, 711, 1427
SfaNI GCATC 3 cut(s) 748, 962, 1027
SfcI CTRYAG 2 cut(s) 757, 1218
Sfr274I CTCGAG 1 cut(s) 895
SinI GGWCC 1 cut(s) 407
SlaI CTCGAG 1 cut(s) 895
SmlI CTYRAG 2 cut(s) 895, 914
SmoI CTYRAG 2 cut(s) 895, 914
Sse9I AATT 4 cut(s) 19, 690, 883, 1440
SsiI CCGC 3 cut(s) 179, 334, 975
SspMI CTAG 2 cut(s) 542, 831
TaaI ACNGT 5 cut(s) 340, 509, 605, 622, 1311
TaiI ACGT 4 cut(s) 32, 331, 471, 790
TaqI TCGA 6 cut(s) 120, 207, 420, 666, 896, 983
TasI AATT 4 cut(s) 19, 690, 883, 1440
TatI WGTACW 1 cut(s) 795
TfiI GAWTC 9 cut(s) 98, 182, 226, 254, 647, 925, 1047, 1149, 1265
Tru1I TTAA 4 cut(s) 26, 504, 549, 854
Tru9I TTAA 4 cut(s) 26, 504, 549, 854
TseFI GTSAC 5 cut(s) 39, 329, 464, 703, 1009
TseI GCWGC 9 cut(s) 161, 164, 167, 827, 848, 1109, 1130, 1229, 1232
Tsp45I GTSAC 5 cut(s) 39, 329, 464, 703, 1009
TspDTI ATGAA 5 cut(s) 938, 1190, 1217, 1266, 1469
TspGWI ACGGA 2 cut(s) 254, 1308
VpaK11BI GGWCC 1 cut(s) 407
XagI CCTNNNNNAGG 1 cut(s) 1221
XapI RAATTY 1 cut(s) 883
XcmI CCANNNNNNNNNTGG 1 cut(s) 469
XhoI CTCGAG 1 cut(s) 895
XspI CTAG 2 cut(s) 542, 831
ZraI GACGTC 1 cut(s) 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.