Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001864

Physical Location & Seq

Genomic Coordinates Reverse (-)

28075810 .. 28077212

Gene Structure 1403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG141400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGTGCGCTACACTAATAGCCAAACCGAGACCCAGGACTCGTCGCTGACCCAAATCTACGACCAGGGTTCCACCTACTTTGGTGACCACCACCAGAACCAGGATCTAAAGGAAATTACTGGGTTCCAAGCCTTTTTGGCTAAATCAGGCTTTGAGGTGGAGGACTCGGCCTCCATGGCCCGGACTCAGCTCATCAACAATTCCTCCGCGAGCTCATCAGCAATTCCTCTGATGCTTGTGCCTGATAAGACCCACAACACCCTCTCCACCATTGATAGTGGTATTCGCATGACTAAAGCAGATATGAGAATCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009956 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010492 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060771 GO:0060772 GO:0060774 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

105

Amino Acids

11.61

Weight (kDa)

5.11

Isoelectric Point (pI)

28.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G65510 AT5G65510 AT5G65510 AT5G65510
fragaria_vesca	FvH4_1g19530
malus_domestica	MD01G1040700.v1.1 MD15G1310900.v1.1
prunus_persica	Prupe.6G142500_v2.0.a1 Prupe.6G203000_v2.0.a1
pyrus_communis	pycom01g06820 pycom15g27450
rosa_chinensis	RchiOBHm_Chr2g0111031 RchiOBHm_Chr4g0405741
rosa_laevigata	RLG00000012851 RLG00000017859 RLG00000020876
rosa_multiflora	Rmu_co8195526.1_g000001 Rmu_sc0000041.1_g000014 Rmu_sc0003994.1_g000004
rosa_roxburghii	Rroxscaffold_2G00132730 Rroxscaffold_5G00366230
rosa_rugosa	Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700
rosa_samantha	Rh2AG222800 Rh2AG222900 Rh2BG234800 Rh2CG226300 Rh2DG230600 Rh2DG230700 Rh2DG399700 Rh4BG037900 Rh4CG141400 Rh6BG125200 Rh6CG051000 Rh7CG223000
rosa_wichuraiana	Rw2G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	209
AciI	CCGC	1 cut(s)	207
AclWI	GGATC	1 cut(s)	111
AfiI	CCNNNNNNNGG	2 cut(s)	100, 180
AjnI	CCWGG	3 cut(s)	33, 63, 99
AluBI	AGCT	3 cut(s)	190, 213, 315
AluI	AGCT	3 cut(s)	190, 213, 315
Alw21I	GWGCWC	1 cut(s)	215
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	1 cut(s)	111
AoxI	GGCC	2 cut(s)	168, 177
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	215
BciT130I	CCWGG	3 cut(s)	35, 65, 101
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	23
BfaI	CTAG	1 cut(s)	316
BglI	GCCNNNNNGGC	2 cut(s)	137, 176
Bme1390I	CCNGG	4 cut(s)	35, 65, 101, 181
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	2 cut(s)	70, 125
BmrFI	CCNGG	4 cut(s)	35, 65, 101, 181
BmrI	ACTGGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	222
BmuI	ACTGGG	1 cut(s)	129
BpuMI	CCSGG	1 cut(s)	181
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	3 cut(s)	33, 64, 174
BsaXI	ACNNNNNCTCC	6 cut(s)	155, 185, 188, 218, 248, 278
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 180
Bse1I	ACTGG	1 cut(s)	124
BseBI	CCWGG	3 cut(s)	35, 65, 101
BseDI	CCNNGG	3 cut(s)	33, 64, 174
BseLI	CCNNNNNNNGG	2 cut(s)	100, 180
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	1 cut(s)	124
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	2 cut(s)	170, 179
BsiHKAI	GWGCWC	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	181
BslI	CCNNNNNNNGG	2 cut(s)	100, 180
BsmAI	GTCTC	1 cut(s)	23
BsnI	GGCC	2 cut(s)	170, 179
Bso31I	GGTCTC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	103
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	1 cut(s)	207
BspANI	GGCC	2 cut(s)	170, 179
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	209
BspLI	GGNNCC	2 cut(s)	70, 125
BspPI	GGATC	1 cut(s)	111
BspTNI	GGTCTC	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	3 cut(s)	33, 64, 174
BssMI	GATC	1 cut(s)	103
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	3 cut(s)	35, 65, 101
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	186
BstDSI	CCRYGG	1 cut(s)	174
BstEII	GGTNACC	1 cut(s)	83
BstFNI	CGCG	1 cut(s)	209
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	1 cut(s)	106
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 176
BstNI	CCWGG	3 cut(s)	35, 65, 101
BstPI	GGTNACC	1 cut(s)	83
BstSCI	CCNGG	4 cut(s)	33, 63, 99, 179
BstUI	CGCG	1 cut(s)	209
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	170, 179
BtgI	CCRYGG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	211
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	178
CspCI	CAANNNNNGTGG	2 cut(s)	61, 96
CviAII	CATG	2 cut(s)	175, 289
CviJI	RGCY	9 cut(s)	21, 131, 140, 150, 170, 179, 190, 213, 315
CviKI_1	RGCY	9 cut(s)	21, 131, 140, 150, 170, 179, 190, 213, 315
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Ecl136II	GAGCTC	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	215
Eco31I	GGTCTC	1 cut(s)	23
Eco53kI	GAGCTC	1 cut(s)	213
Eco91I	GGTNACC	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	213
EcoO65I	GGTNACC	1 cut(s)	83
EcoRII	CCWGG	3 cut(s)	33, 63, 99
EcoT14I	CCWWGG	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	2 cut(s)	178, 292
FaiI	YATR	3 cut(s)	176, 290, 305
FatI	CATG	2 cut(s)	174, 288
FriOI	GRGCYC	1 cut(s)	215
FspBI	CTAG	1 cut(s)	316
GlaI	GCGC	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	170, 179
HapII	CCGG	1 cut(s)	181
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	2 cut(s)	178, 292
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HinfI	GANTC	4 cut(s)	38, 164, 184, 309
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	1 cut(s)	95
Hpy188I	TCNGA	1 cut(s)	231
Hpy99I	CGWCG	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 176
HpyF3I	CTNAG	1 cut(s)	186
Hsp92II	CATG	2 cut(s)	178, 292
HspAI	GCGC	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	103
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	1 cut(s)	316
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	3 cut(s)	114, 199, 222
MlyI	GAGTC	3 cut(s)	32, 158, 178
MnlI	CCTC	6 cut(s)	148, 154, 181, 214, 237, 272
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	4 cut(s)	35, 65, 101, 181
MvaI	CCWGG	3 cut(s)	35, 65, 101
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	2 cut(s)	137, 176
NciI	CCSGG	1 cut(s)	181
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	2 cut(s)	178, 292
NlaIV	GGNNCC	2 cut(s)	70, 125
NmeAIII	GCCGAG	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	309
PleI	GAGTC	3 cut(s)	32, 158, 178
PpsI	GAGTC	3 cut(s)	32, 158, 178
Psp124BI	GAGCTC	1 cut(s)	215
Psp6I	CCWGG	3 cut(s)	33, 63, 99
PspEI	GGTNACC	1 cut(s)	83
PspGI	CCWGG	3 cut(s)	33, 63, 99
PspN4I	GGNNCC	2 cut(s)	70, 125
PspPI	GGNCC	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	103
SacI	GAGCTC	1 cut(s)	215
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	3 cut(s)	32, 158, 178
ScrFI	CCNGG	4 cut(s)	35, 65, 101, 181
SduI	GDGCHC	1 cut(s)	215
SetI	ASST	5 cut(s)	77, 159, 192, 215, 317
SfaNI	GCATC	1 cut(s)	222
SfiI	GGCCNNNNNGGCC	1 cut(s)	176
Sse9I	AATT	3 cut(s)	114, 199, 222
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	1 cut(s)	316
SstI	GAGCTC	1 cut(s)	215
StyD4I	CCNGG	4 cut(s)	33, 63, 99, 179
StyI	CCWWGG	1 cut(s)	174
TasI	AATT	3 cut(s)	114, 199, 222
TfiI	GAWTC	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	83
XspI	CTAG	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.